View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20283_low_1 (Length: 388)

Name: NF20283_low_1
Description: NF20283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20283_low_1
NF20283_low_1
[»] chr5 (13 HSPs)
chr5 (207-374)||(33403238-33403405)
chr5 (207-291)||(36768761-36768845)
chr5 (1-133)||(36745294-36745427)
chr5 (207-291)||(5712270-5712354)
chr5 (3-146)||(36633595-36633739)
chr5 (40-133)||(17076238-17076332)
chr5 (37-133)||(30077945-30078041)
chr5 (1-62)||(43144918-43144979)
chr5 (45-96)||(25767341-25767392)
chr5 (207-270)||(42897567-42897630)
chr5 (207-270)||(2970857-2970920)
chr5 (207-270)||(36982230-36982293)
chr5 (31-92)||(25819462-25819522)
[»] chr2 (16 HSPs)
chr2 (1-146)||(32033327-32033472)
chr2 (207-291)||(31922011-31922095)
chr2 (210-291)||(25898510-25898591)
chr2 (27-133)||(4075947-4076054)
chr2 (1-96)||(6141648-6141743)
chr2 (1-113)||(18458950-18459063)
chr2 (1-96)||(11562360-11562455)
chr2 (10-133)||(18703279-18703403)
chr2 (1-92)||(3356753-3356844)
chr2 (209-270)||(16964862-16964923)
chr2 (207-270)||(4828282-4828345)
chr2 (207-270)||(42847100-42847163)
chr2 (207-270)||(45080611-45080674)
chr2 (208-270)||(29194033-29194095)
chr2 (207-270)||(2110264-2110327)
chr2 (207-270)||(43370718-43370781)
[»] chr7 (22 HSPs)
chr7 (207-342)||(22337755-22337890)
chr7 (1-133)||(30074257-30074390)
chr7 (1-133)||(2945013-2945145)
chr7 (27-133)||(43265559-43265666)
chr7 (1-133)||(33941255-33941388)
chr7 (1-111)||(32221655-32221766)
chr7 (1-113)||(24039551-24039664)
chr7 (213-342)||(22619574-22619703)
chr7 (1-96)||(10702909-10703004)
chr7 (1-96)||(38293471-38293566)
chr7 (1-111)||(1692007-1692117)
chr7 (207-270)||(40232308-40232371)
chr7 (207-270)||(24300337-24300400)
chr7 (207-270)||(25943838-25943901)
chr7 (1-96)||(46089848-46089943)
chr7 (207-270)||(48838104-48838167)
chr7 (208-269)||(31689547-31689608)
chr7 (207-270)||(4040991-4041054)
chr7 (207-270)||(6392315-6392378)
chr7 (207-270)||(21442991-21443054)
chr7 (207-270)||(29737449-29737512)
chr7 (36-96)||(3045063-3045123)
[»] chr3 (20 HSPs)
chr3 (207-342)||(30459850-30459985)
chr3 (1-146)||(23778610-23778756)
chr3 (3-119)||(8034945-8035062)
chr3 (1-133)||(36477660-36477793)
chr3 (1-132)||(36475824-36475956)
chr3 (1-119)||(7728691-7728810)
chr3 (27-133)||(26903531-26903638)
chr3 (27-133)||(36617402-36617509)
chr3 (1-96)||(26285488-26285583)
chr3 (1-143)||(24310231-24310374)
chr3 (207-270)||(50676519-50676582)
chr3 (207-270)||(41346091-41346154)
chr3 (207-270)||(51545706-51545769)
chr3 (207-270)||(54014281-54014344)
chr3 (207-270)||(12568201-12568264)
chr3 (207-270)||(13544665-13544728)
chr3 (207-270)||(40496817-40496880)
chr3 (207-270)||(48169768-48169831)
chr3 (21-58)||(7856870-7856907)
chr3 (158-194)||(41346045-41346081)
[»] chr4 (17 HSPs)
chr4 (21-133)||(2815927-2816040)
chr4 (157-291)||(10441140-10441272)
chr4 (207-342)||(28690016-28690151)
chr4 (9-133)||(2158943-2159068)
chr4 (1-143)||(4377637-4377780)
chr4 (1-146)||(50722918-50723064)
chr4 (37-143)||(36248263-36248370)
chr4 (1-95)||(33518429-33518523)
chr4 (1-112)||(24153863-24153975)
chr4 (207-270)||(51744677-51744740)
chr4 (1-64)||(5882779-5882842)
chr4 (207-270)||(37064946-37065009)
chr4 (207-270)||(40071642-40071705)
chr4 (222-269)||(41555521-41555568)
chr4 (207-270)||(54438350-54438413)
chr4 (216-270)||(925329-925383)
chr4 (224-270)||(28910349-28910395)
[»] chr1 (18 HSPs)
chr1 (1-133)||(25031299-25031432)
chr1 (1-133)||(9477980-9478113)
chr1 (1-133)||(34912666-34912799)
chr1 (27-133)||(1016630-1016737)
chr1 (1-122)||(9539253-9539375)
chr1 (1-113)||(6227037-6227150)
chr1 (1-96)||(10780837-10780931)
chr1 (207-270)||(46370971-46371034)
chr1 (28-84)||(42311302-42311358)
chr1 (207-270)||(1929409-1929472)
chr1 (207-270)||(46862600-46862663)
chr1 (207-270)||(50777041-50777104)
chr1 (207-270)||(28036894-28036957)
chr1 (207-270)||(38817818-38817881)
chr1 (207-270)||(39151090-39151153)
chr1 (207-270)||(40562627-40562690)
chr1 (227-270)||(47603766-47603809)
chr1 (224-270)||(8229124-8229170)
[»] chr8 (13 HSPs)
chr8 (1-133)||(44873641-44873774)
chr8 (27-133)||(45485820-45485927)
chr8 (1-126)||(32161017-32161143)
chr8 (213-291)||(11146820-11146897)
chr8 (37-131)||(2148772-2148867)
chr8 (1-96)||(6802416-6802511)
chr8 (1-92)||(24556564-24556655)
chr8 (1-96)||(29866520-29866615)
chr8 (207-270)||(9753814-9753877)
chr8 (207-270)||(27820817-27820880)
chr8 (207-270)||(39906954-39907017)
chr8 (207-270)||(12738559-12738622)
chr8 (222-270)||(13243739-13243787)
[»] chr6 (14 HSPs)
chr6 (1-133)||(14607382-14607514)
chr6 (27-133)||(18817293-18817400)
chr6 (27-133)||(24902062-24902169)
chr6 (8-146)||(2919651-2919785)
chr6 (1-91)||(6689551-6689641)
chr6 (1-113)||(21883612-21883725)
chr6 (1-86)||(19266869-19266954)
chr6 (207-270)||(13042016-13042079)
chr6 (216-270)||(1870587-1870641)
chr6 (207-269)||(12350316-12350378)
chr6 (216-270)||(13210397-13210451)
chr6 (207-270)||(16435823-16435886)
chr6 (210-270)||(28541780-28541840)
chr6 (207-267)||(31833761-31833821)
[»] scaffold0318 (1 HSPs)
scaffold0318 (207-270)||(16401-16464)
[»] scaffold0047 (1 HSPs)
scaffold0047 (207-270)||(69797-69860)
[»] scaffold1194 (1 HSPs)
scaffold1194 (207-270)||(1023-1086)
[»] scaffold0532 (1 HSPs)
scaffold0532 (207-270)||(3858-3921)
[»] scaffold0061 (1 HSPs)
scaffold0061 (207-270)||(10210-10273)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 207 - 374
Target Start/End: Original strand, 33403238 - 33403405
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgattgtatggtctccatgtnnnnnnngtgtgaca 306  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||    
T  33403238 ttgtcctaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgcttgtatggtctccatgtaaaaaaagtgtgaca 33403337  T
Q  307 gctccattgaatgcaaagcatgcttactgcttcacgcagctaaaatcctatactccacatgaacaacc 374  Q
    |||||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  33403338 gctccattgagtgccaagcatgcttactgctccacgtagctaaaatcctatactccacatgaacaacc 33403405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 36768845 - 36768761
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgattgtatggtctccatgt 291  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36768845 ttgtcccaaaatactcgaccttatcaaattttaaagcaaaatttgacaattttaccccttataattgcttgtatggtctccatgt 36768761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 36745294 - 36745427
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||||||||||||||  | ||||| |||||| ||||||||||||||||||||||||||||||| |||||||| | ||||| || || ||||| ||||||    
T  36745294 ataattcttaagttgagtgcgtaacgccactttcaacacatctataaaatcatttggataaaacccagtcatcctcaataacttgtttacatcaaaagct 36745393  T
Q  100 acaaatgactttgcaggactcaaacatgaaacac 133  Q
     ||||| ||||||||||| |||| ||| ||||||    
T  36745394 gcaaataactttgcaggaatcaagcatcaaacac 36745427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 5712270 - 5712354
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgattgtatggtctccatgt 291  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  5712270 ttgtcctaaaataattgaccttctcaaattttaaagcaaaatttgacaatttcaccctttataattgcttgtatggtctccatgt 5712354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 36633739 - 36633595
Alignment:
Q  3 aattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctac 101  Q
    |||||||||||| | || ||||| ||||||||  ||||||||| ||||||||||||||||||| ||||||| | |||||||| |||||||| ||| |  |    
T  36633739 aattcttaagttaatggcgtaacgccacttccggcacatctattaaatcatttggataaaacttagtcatcctcaataatttgttcacatcaaaaaccgc 36633640  T
Q  102 aaatgactttgcaggactcaaacatgaaacacgctataaaagaga 146  Q
    |||||||||||||||| ||||| || |||||| || |||||||||    
T  36633639 aaatgactttgcaggattcaaatataaaacacactttaaaagaga 36633595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 17076332 - 17076238
Alignment:
Q  40 atctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgactttgcaggactcaaacatgaaacac 133  Q
    ||||| ||||| ||||||||||| ||||| |||| | |||||||| |||||||| |||||  |||||||||| |||||||| |||||||||||||    
T  17076332 atctacaaaattatttggataaagctcagccatcctcaataatttgttcacatcaaaagcagcaaatgacttagcaggactaaaacatgaaacac 17076238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 30078041 - 30077945
Alignment:
Q  37 cacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgactttgcaggactcaaacatgaaacac 133  Q
    |||||||||||||| |||||||||||||||||||||  | ||||| ||| ||||||| |||||   |||| || |||||||||||||||| |||||||    
T  30078041 cacatctataaaattatttggataaaactcagtcattctcaataa-ttaatcacatcaaaagcagtaaataacattgcaggactcaaacaagaaacac 30077945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43144918 - 43144979
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaa 62  Q
    |||||||||||||||| | |||||   |||||||||||||||||| ||||||||||||||||    
T  43144918 ataattcttaagttgatgttgtaatgtcacttccaacacatctatgaaatcatttggataaa 43144979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 25767341 - 25767392
Alignment:
Q  45 taaaatcatttggataaaactcagtcatcattaataatttattcacatcaaa 96  Q
    ||||||||||||||| ||||||||||||| | |||||||| |||||||||||    
T  25767341 taaaatcatttggattaaactcagtcatcctcaataatttgttcacatcaaa 25767392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 42897630 - 42897567
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  42897630 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 42897567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 2970920 - 2970857
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| |||| |||||||||||  ||||| |||||||||| |||||||| |||||    
T  2970920 ttgtcccacaatacttgacattctcaaatttctaagcagaatttgacaaatttaccccgtataa 2970857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 36982230 - 36982293
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  | |||||||||||||  ||||||||||||||    
T  36982230 ttgtcccacaatacttgaccttctcatatttctaggcaaaatttgacagatttaccccttataa 36982293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 25819462 - 25819522
Alignment:
Q  31 ttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacat 92  Q
    |||||||| ||||| |||| ||||||||| ||| ||||||||| | ||||||||||||||||    
T  25819462 ttccaacatatctacaaaaccatttggat-aaattcagtcatcctcaataatttattcacat 25819522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 32033327 - 32033472
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaagcta 100  Q
    |||||||||||||||| || | |||||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||    
T  32033327 ataattcttaagttgatggcgaaacaccacttccgacacatctatacaatcatttggataaaactctgtcatcatcaataacttattcacatcaaagcta 32033426  T
Q  101 caaatgactttgcaggactcaaacatgaaacacgctataaaagaga 146  Q
    ||||||| ||||| | ||||||||||||||||| ||||||||||||    
T  32033427 caaatgattttgcggaactcaaacatgaaacacactataaaagaga 32033472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 31922095 - 31922011
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgattgtatggtctccatgt 291  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31922095 ttgtcccaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgcttgtatggtctccatgt 31922011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 25898510 - 25898591
Alignment:
Q  210 tcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgattgtatggtctccatgt 291  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  25898510 tcccaaaatactcgaccttctcaaattttaaagcaaaatttgataattttactccttataattgcttgtatggtctccatgt 25898591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 4075947 - 4076054
Alignment:
Q  27 ccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgactttgcaggactcaaaca 125  Q
    |||||||| ||||||||| ||||||||||||||||| ||||| |||| | |||||||| |||||||| |||||   ||||||||||||||||||||||||    
T  4075947 ccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttgcaggactcaaaca 4076046  T
Q  126 tgaaacac 133  Q
    ||||||||    
T  4076047 tgaaacac 4076054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 6141648 - 6141743
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaa 96  Q
    ||||||||||||||||  | ||||| |||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||    
T  6141648 ataattcttaagttgagtgcgtaacgccacttccgatacatctataaaatcatttggataaaactcagtcatcctcaataatttgttcacatcaaa 6141743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 18458950 - 18459063
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    |||||| |||||||||  ||||||| ||||||||  ||||||||||||||||||||||||||||||||| ||| | |||||||| |||| ||| |||| |    
T  18458950 ataattattaagttgagtgtgtaacgccacttccggcacatctataaaatcatttggataaaactcagtaatcctcaataatttgttcatatcaaaagtt 18459049  T
Q  100 acaaatgactttgc 113  Q
     |||||||||||||    
T  18459050 gcaaatgactttgc 18459063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11562360 - 11562455
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaa 96  Q
    |||||||||||||||| || ||||| |||||||| |||||||||| ||||||||| ||||||| ||||||||| |  ||||||| |||||||||||    
T  11562360 ataattcttaagttgatggcgtaacgccacttccgacacatctattaaatcatttagataaaattcagtcatcctccataatttgttcacatcaaa 11562455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 18703403 - 18703279
Alignment:
Q  10 aagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgac 108  Q
    ||||||| || | ||| ||||||| ||||| |||| ||||||||||||||||||||||  || | | |||||||| |||||||| |||| | ||||||||    
T  18703403 aagttgatggcgcaaccccacttctaacacttctaaaaaatcatttggataaaactcatccaacctcaataatttgttcacatcaaaagttgcaaatgac 18703304  T
Q  109 tttgcaggactcaaacatgaaacac 133  Q
    || ||| ||||||||||||||||||    
T  18703303 ttcgcatgactcaaacatgaaacac 18703279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3356844 - 3356753
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacat 92  Q
    ||||||| |||||||| ||  |||| ||||| || ||||||||||||||||||||| |||||||||| ||||| | |||||||| |||||||    
T  3356844 ataattcataagttgatggcataacgccactaccgacacatctataaaatcatttgtataaaactcattcatcctcaataatttgttcacat 3356753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 16964862 - 16964923
Alignment:
Q  209 gtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||| ||||| ||||||||||||||||| ||| |||||||||||| ||||||||||||||    
T  16964862 gtcccacaatacttgaccttctcaaatttttaagtaaaatttgacaagtttaccccttataa 16964923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 4828345 - 4828282
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||  ||||||||||||||||  |||||||||||||||| ||||||||||||||    
T  4828345 ttgtcccacaatatttgaccttctcaaatttctaagcaaaatttgacaaatttaccccttataa 4828282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 42847163 - 42847100
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||| ||| ||||| ||||| |||||||||| ||||||||||||||    
T  42847163 ttgtcccataatacttgaccttttcagatttttaagcagaatttgacaaatttaccccttataa 42847100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 45080674 - 45080611
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  45080674 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 45080611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 29194033 - 29194095
Alignment:
Q  208 tgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    ||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  29194033 tgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 29194095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 2110264 - 2110327
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||| ||| ||||  |||||||||||||||  ||||||||||||||    
T  2110264 ttgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccccttataa 2110327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 43370718 - 43370781
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||| | ||||  |||||||||||||||  ||||||||||||||    
T  43370718 ttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataa 43370781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 342
Target Start/End: Original strand, 22337755 - 22337890
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgattgtatggtctccatgtnnnnnnngtgtgaca 306  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||       ||||| ||    
T  22337755 ttgtcccaaaatacttgaccttctcaaattttaaagcaaaaattgacaattttaccccttataattgcttgtatggtctccatgtaaaaaaagtgtgtca 22337854  T
Q  307 gctccattgaatgcaaagcatgcttactgcttcacg 342  Q
    |||||||||| ||| ||||||||||||| |||||||    
T  22337855 gctccattgagtgccaagcatgcttactacttcacg 22337890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 30074390 - 30074257
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| | |||||||| |||||||| ||| ||    
T  30074390 ataattcttaagttgatggtgtaacgccacttccaacacatctataaaattatttggataatactcagtcatcctcaataatttgttcacatcaaaaact 30074291  T
Q  100 acaaatgactttgcaggactcaaacatgaaacac 133  Q
    |||||||||||||||  |||||||||| ||||||    
T  30074290 acaaatgactttgcaaaactcaaacataaaacac 30074257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 2945145 - 2945013
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaagcta 100  Q
    |||||||||||||||| |  |||||  ||||||| |||||||||||||||||||||||||||||||  ||||| | |||||||| ||||||||||| |      
T  2945145 ataattcttaagttgatgacgtaacgtcacttccgacacatctataaaatcatttggataaaactcgatcatcctcaataatttgttcacatcaaaacgg 2945046  T
Q  101 caaatgactttgcaggactcaaacatgaaacac 133  Q
    ||||||||||||| | |||||||||| ||||||    
T  2945045 caaatgactttgcggaactcaaacataaaacac 2945013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 43265666 - 43265559
Alignment:
Q  27 ccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgactttgcaggactcaaaca 125  Q
    |||||||| ||||||||| ||||||||||||||||| ||||| |||| |||||||||| |||||||| |||||   ||||||||||||||||||||||||    
T  43265666 ccacttccgacacatctacaaaatcatttggataaagctcagccatccttaataatttgttcacatcaaaagcagaaaatgactttgcaggactcaaaca 43265567  T
Q  126 tgaaacac 133  Q
    ||||||||    
T  43265566 tgaaacac 43265559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 33941388 - 33941255
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    |||||||||||||||| | |||||| ||||||||| ||||||||||||||||||||| |||| |||   |||  | |||||||| |||||||| ||||||    
T  33941388 ataattcttaagttgacgatgtaacgccacttccagcacatctataaaatcatttgggtaaatctcgcccattctcaataatttgttcacatcaaaagct 33941289  T
Q  100 acaaatgactttgcaggactcaaacatgaaacac 133  Q
     ||||||| ||||| |||||||||||||||||||    
T  33941288 gcaaatgattttgcgggactcaaacatgaaacac 33941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 32221766 - 32221655
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    |||||| ||||||||| |||||||| |||||||| ||||| |||||||||||||| |||||||| || || || |||||||||| |||||||| ||||||    
T  32221766 ataatttttaagttgatggtgtaacgccacttccgacacaactataaaatcatttcgataaaacccaatcttccttaataatttgttcacatcaaaagct 32221667  T
Q  100 acaaatgacttt 111  Q
    ||||||||||||    
T  32221666 acaaatgacttt 32221655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 24039551 - 24039664
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||||||||||||||  |||||| ||||||| |  |||||||||||||||||||||||||||||||| |||| | |||||||| |||||||| ||| ||    
T  24039551 ataattcttaagttgagtgtgtaataccactttcggcacatctataaaatcatttggataaaactcaggcatcctcaataatttgttcacatcaaaatct 24039650  T
Q  100 acaaatgactttgc 113  Q
     |||||||||||||    
T  24039651 gcaaatgactttgc 24039664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 342
Target Start/End: Original strand, 22619574 - 22619703
Alignment:
Q  213 caaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgattgtatggtctccatgtnnnnnnngtgtgacagctcca 312  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||| | |||||||||||||||       ||||| ||||||||    
T  22619574 caaaatacttgatcttctcaaattttaaagcaaaatttgacaatttgactccttataattgctagtatggtctccatgtaaaaaaagtgtgtcagctcca 22619673  T
Q  313 ttgaatgcaaagcatgcttactgcttcacg 342  Q
    |||| |   || |||||||||| |||||||    
T  22619674 ttgagtatcaaacatgcttactacttcacg 22619703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 10702909 - 10703004
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaa 96  Q
    |||||||||||||| |  ||||||| | ||||||| |||||||| |||||||||||||||||||||| | ||| | |||||||| |||||||||||    
T  10702909 ataattcttaagttcagtgtgtaacgcaacttccagcacatctagaaaatcatttggataaaactcactaatcctcaataatttgttcacatcaaa 10703004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 38293566 - 38293471
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaa 96  Q
    ||||||||||||||||  | ||||| ||||||||   ||||||||||||| ||||||||||| |||||||||| | |||||||| |||||||||||    
T  38293566 ataattcttaagttgagtgcgtaacgccacttccggaacatctataaaattatttggataaagctcagtcatcctcaataatttgttcacatcaaa 38293471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 1692007 - 1692117
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||||||||||||||  | ||||| |||||||   |||||| ||| ||| ||||| | |||||||||||||| | |||||||| |||||||| ||||||    
T  1692007 ataattcttaagttgagtgcgtaacgccacttctggcacatccatacaattatttgaa-aaaactcagtcatcctcaataatttcttcacatcaaaagct 1692105  T
Q  100 acaaatgacttt 111  Q
    ||||||||||||    
T  1692106 acaaatgacttt 1692117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 40232371 - 40232308
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||||||||  |||||||||||||||  ||||||||||||||    
T  40232371 ttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccccttataa 40232308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 24300400 - 24300337
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||| ||||||||  |||||||||||||||  ||||||||||||||    
T  24300400 ttgtcccacaatacttgaccttatcaaatttctaagcaaaatttgacagatttaccccttataa 24300337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 25943901 - 25943838
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  25943901 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 25943838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 46089943 - 46089848
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaa 96  Q
    ||||||| |||||||| ||  |||| |||||||| ||| | ||||||||| |||||| |||| |||||||||| |  ||||||| |||||||||||    
T  46089943 ataattcctaagttgatggcataacgccacttccgacataactataaaattatttgggtaaacctcagtcatcctcgataatttgttcacatcaaa 46089848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 48838104 - 48838167
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| |||| |||||| ||||| ||||| |||||||||| ||||||||||||||    
T  48838104 ttgtcccacaatacttgactttctcagatttttaagcagaatttgacaaatttaccccttataa 48838167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 31689608 - 31689547
Alignment:
Q  208 tgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttata 269  Q
    ||||||| ||||| ||||||||||| ||||  |||||||||||||||  |||||||||||||    
T  31689608 tgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttata 31689547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 4040991 - 4041054
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  ||||||||||||||   ||||||||||||||    
T  4040991 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacggatttaccccttataa 4041054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 6392315 - 6392378
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| | ||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  6392315 ttgtcccacaatactttaccttctcagatttctaagcaaaatttgacagatttaccccttataa 6392378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 21443054 - 21442991
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||| ||| | |||||||||| |||| |||||||||    
T  21443054 ttgtcccacaatacttgaccttctcagatttttaagtagaatttgacaaatttatcccttataa 21442991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 29737449 - 29737512
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||| | ||||  |||||||||||||||  ||||||||||||||    
T  29737449 ttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataa 29737512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 3045063 - 3045123
Alignment:
Q  36 acacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaa 96  Q
    ||||||||||||||| |||||||||||| |||   ||| | |||||||| |||||||||||    
T  3045063 acacatctataaaattatttggataaaattcaacgatcctcaataatttgttcacatcaaa 3045123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 342
Target Start/End: Original strand, 30459850 - 30459985
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgattgtatggtctccatgtnnnnnnngtgtgaca 306  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||| ||    
T  30459850 ttgtccctaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgcttgtatggtctccatgtaaaaaaagtgtgtca 30459949  T
Q  307 gctccattgaatgcaaagcatgcttactgcttcacg 342  Q
    |||||||||| ||| ||||||||||||| |||||||    
T  30459950 gctccattgagtgccaagcatgcttactacttcacg 30459985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 23778610 - 23778756
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    |||||||||||||||| || |||||  |||||||  ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||| |    
T  23778610 ataattcttaagttgacggggtaacgtcacttccggcacatctataaaatcatttggataaaactcagtcatcctcaataatttgttcacatcaaaagtt 23778709  T
Q  100 acaaatgactttgcaggactcaaacatgaaacacgctataaaagaga 146  Q
    |||||||||||| | ||||| |||||| ||||||| | |||||||||    
T  23778710 acaaatgactttacgggactgaaacataaaacacgttgtaaaagaga 23778756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 8034945 - 8035062
Alignment:
Q  3 aattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctac 101  Q
    ||||||||||||||  |||| || |||||| | |||||||||||||||||||||||||||||| ||||||| | |||||||| |||||||| ||||||      
T  8034945 aattcttaagttgagtgtgtgacgccactttcgacacatctataaaatcatttggataaaactgagtcatcctcaataatttgttcacatcaaaagctgt 8035044  T
Q  102 aaatgactttgcaggact 119  Q
    ||||||||||||||||||    
T  8035045 aaatgactttgcaggact 8035062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 36477793 - 36477660
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||||||||||||||  ||||||| |||||| |  |||||||||||||| |||| ||||||||||| ||||| | |||||||| |||||||| |||| |    
T  36477793 ataattcttaagttgagtgtgtaacgccactttcggcacatctataaaattattttgataaaactcaatcatcctcaataatttgttcacatcaaaagtt 36477694  T
Q  100 acaaatgactttgcaggactcaaacatgaaacac 133  Q
    |||||||||||||||| |||||| || |||||||    
T  36477693 acaaatgactttgcagaactcaagcacgaaacac 36477660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 36475824 - 36475956
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacat-caaagct 99  Q
    ||||||| |||||||| |||||||| |||| |||  |||| || ||||||||||||||||||||||||||||| | |||||||| |||||||  ||| ||    
T  36475824 ataattcctaagttgatggtgtaacgccacatccggcacacctgtaaaatcatttggataaaactcagtcatcctcaataatttcttcacataaaaaact 36475923  T
Q  100 acaaatgactttgcaggactcaaacatgaaaca 132  Q
     ||||||||||||| |||||||||| |||||||    
T  36475924 gcaaatgactttgcgggactcaaacttgaaaca 36475956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 7728810 - 7728691
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||||||||||||||  |  |||| |||||||| |||||||||||||||||||||||||||||||||| ||  | |||||||| |||||||| ||||||    
T  7728810 ataattcttaagttgagtgcataacgccacttccgacacatctataaaatcatttggataaaactcagttattctcaataatttgttcacatcaaaagct 7728711  T
Q  100 acaaatgactttgcaggact 119  Q
     ||||||||||||| |||||    
T  7728710 gcaaatgactttgcgggact 7728691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 26903531 - 26903638
Alignment:
Q  27 ccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgactttgcaggactcaaaca 125  Q
    |||||||| ||||||||| ||||||||||||||||| ||||| |||| | |||||||| |||||||| |||||   ||||||||||||||||||||||||    
T  26903531 ccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttgcaggactcaaaca 26903630  T
Q  126 tgaaacac 133  Q
    ||||||||    
T  26903631 tgaaacac 26903638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 36617509 - 36617402
Alignment:
Q  27 ccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgactttgcaggactcaaaca 125  Q
    |||||||| ||||||||| ||||||||||||||||| ||||| |||| | |||||||| |||||||| |||||   ||||||||||||||||||||||||    
T  36617509 ccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttgcaggactcaaaca 36617410  T
Q  126 tgaaacac 133  Q
    ||||||||    
T  36617409 tgaaacac 36617402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 26285583 - 26285488
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaa 96  Q
    |||||| ||||||||| || |||||||||||||| |||||| |||||||||||||||||||||||||  |||| | |||||||| |||||||||||    
T  26285583 ataattattaagttgacggcgtaacaccacttccgacacatttataaaatcatttggataaaactcaaccatcctcaataatttgttcacatcaaa 26285488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 24310231 - 24310374
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    |||||||||||||||   ||||||  ||||||||  |||||||||||||||||||||||||||||||  |||  | |||||||| |||||||| ||| ||    
T  24310231 ataattcttaagttgcgtgtgtaatgccacttccggcacatctataaaatcatttggataaaactcaaccattctcaataatttcttcacatcaaaaact 24310330  T
Q  100 acaaatgactttgcaggactcaaacatgaaacacgctataaaag 143  Q
     |||| |||||||| ||||  || |||||||||| || ||||||    
T  24310331 gcaaacgactttgcgggacctaagcatgaaacacactgtaaaag 24310374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 50676519 - 50676582
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||| |||||||||||||||  ||||||||||||||    
T  50676519 ttgtcccacaatacttgaccttctcagatttttaagcaaaatttgacagatttaccccttataa 50676582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 41346091 - 41346154
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  41346091 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 41346154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 51545706 - 51545769
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  51545706 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 51545769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 54014281 - 54014344
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  54014281 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 54014344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 12568264 - 12568201
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| |||| |||||| ||||  |||||||||||||||  ||||||||||||||    
T  12568264 ttgtcccacaatacttgactttctcagatttctaagcaaaatttgacagatttaccccttataa 12568201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 13544728 - 13544665
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| |||| |||||| ||||  |||||||||||||||  ||||||||||||||    
T  13544728 ttgtcccacaatacttgactttctcagatttctaagcaaaatttgacagatttaccccttataa 13544665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 40496817 - 40496880
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  || ||||||||||||  ||||||||||||||    
T  40496817 ttgtcccacaatacttgaccttctcagatttctaaacaaaatttgacagatttaccccttataa 40496880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 48169768 - 48169831
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  |||| |||||||||    
T  48169768 ttgtcccataatacttgaccttctcagatttctaagcaaaatttgacagatttatcccttataa 48169831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 7856870 - 7856907
Alignment:
Q  21 gtaacaccacttccaacacatctataaaatcatttgga 58  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  7856870 gtaacaccacttccggcacatctataaaatcatttgga 7856907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 41346045 - 41346081
Alignment:
Q  158 aatactccgtccgtccctgaataagtcacctatttgt 194  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  41346045 aatactccctccgtccctgaataagtgacctatttgt 41346081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 2815927 - 2816040
Alignment:
Q  21 gtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgactttgcaggact 119  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||| ||||||| | ||||||||||||||||| |||||| ||||||||||||| |||||    
T  2815927 gtaacaccacttccagcacttctataaaattatttggataaaactaagtcatcttcaataatttattcacatcaaaagctgcaaatgactttgcgggact 2816026  T
Q  120 caaacatgaaacac 133  Q
    ||||||||||||||    
T  2816027 caaacatgaaacac 2816040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 157 - 291
Target Start/End: Original strand, 10441140 - 10441272
Alignment:
Q  157 taatactccgtccgtccctgaataagtcacctatttgtnnnnnnnnnnnnttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaat 256  Q
    ||||||||| ||||||||||||||||| ||||||||||            |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10441140 taatactccctccgtccctgaataagtgacctatttgtaaaaaaaaat--ttgtcccaaaatacttgaccttctcaaattttaaagcaaaatttgacaat 10441237  T
Q  257 tttaccccttataattgattgtatggtctccatgt 291  Q
    |||||| |||||||||| |||||||||||||||||    
T  10441238 tttacctcttataattgcttgtatggtctccatgt 10441272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 342
Target Start/End: Complemental strand, 28690151 - 28690016
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgattgtatggtctccatgtnnnnnnngtgtgaca 306  Q
    ||||| |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||       ||||| ||    
T  28690151 ttgtcgcaaaatatttgaccttctcaaattttaaagcaaaatttgacaattttatcccttataattgcttgtatgatctccatgtaaaaaaagtgtgtca 28690052  T
Q  307 gctccattgaatgcaaagcatgcttactgcttcacg 342  Q
    |||||||||| ||  || |||||||||| |||||||    
T  28690051 gctccattgagtgacaaacatgcttactacttcacg 28690016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 2158943 - 2159068
Alignment:
Q  9 taagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatga 107  Q
    |||||||| || ||||| ||||||||  ||||||||||||||||||||||||||||||||||||  | |||||||| |||||||| |||||| |||||||    
T  2158943 taagttgatggcgtaacgccacttcctgcacatctataaaatcatttggataaaactcagtcattctcaataatttgttcacatcaaaagctgcaaatga 2159042  T
Q  108 ctttgcaggactcaaacatgaaacac 133  Q
    |||||| | ||| |||||||||||||    
T  2159043 ctttgcggaactgaaacatgaaacac 2159068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 4377637 - 4377780
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||||||||||||||  | ||| | |||||| |  |||||||||||||| ||||||||||||||| |||||| | ||||| || |||||||| ||||||    
T  4377637 ataattcttaagttgagtgcgtatcgccactttcggcacatctataaaattatttggataaaactctgtcatcttcaataacttgttcacatcaaaagct 4377736  T
Q  100 acaaatgactttgcaggactcaaacatgaaacacgctataaaag 143  Q
     ||||||||||||| |||||||| |||||||||| || ||||||    
T  4377737 gcaaatgactttgcgggactcaagcatgaaacacactgtaaaag 4377780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 50723064 - 50722918
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||| |||||||||| || ||| ||||||||||| ||||| ||| ||||||||||||||||||||  ||||| | |||||||| || ||||| ||||||    
T  50723064 ataatacttaagttgatggcgtagcaccacttccagcacatttattaaatcatttggataaaactcgatcatcctcaataatttgtttacatcaaaagct 50722965  T
Q  100 acaaatgactttgcaggactcaaacatgaaacacgctataaaagaga 146  Q
    |||||||||||||   || |||||||||||| |  ||||||||||||    
T  50722964 acaaatgactttgtgagattcaaacatgaaatatactataaaagaga 50722918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 36248263 - 36248370
Alignment:
Q  37 cacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgactttgcaggactcaaacatgaaacacgc 135  Q
    ||||||||||||||||||||||||||||||||||||| | ||||| || ||| |||| |||||| ||||||| ||||| |||||||| |||||||||| |    
T  36248263 cacatctataaaatcatttggataaaactcagtcatcctcaataacttgttcgcatcaaaagctgcaaatgattttgcgggactcaagcatgaaacacac 36248362  T
Q  136 tataaaag 143  Q
    | ||||||    
T  36248363 tgtaaaag 36248370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33518429 - 33518523
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaa 95  Q
    ||||||||||| ||||  ||||||| |||||| || ||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||    
T  33518429 ataattcttaaattgagtgtgtaacgccactttcagcacatctataaaatcatttggataaaactcagtcatcctcaataacttgttcacatcaa 33518523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 24153863 - 24153975
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||||| |||||||| |||||||| ||||||||  ||||| |||||||| |||||||||||||||| ||||| | ||||||||  ||| ||| ||||||    
T  24153863 ataattcataagttgatggtgtaacgccacttccggcacatttataaaattatttggataaaactcaatcatcctcaataatttggtcatatcaaaagct 24153962  T
Q  100 acaaatgactttg 112  Q
     ||||| ||||||    
T  24153963 gcaaattactttg 24153975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 51744740 - 51744677
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||||||||  |||||||||||||||  ||||||||||||||    
T  51744740 ttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccccttataa 51744677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5882779 - 5882842
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaac 64  Q
    |||||||||||||||| || |||||  ||||||| |||||||||| |||| |||||||||||||    
T  5882779 ataattcttaagttgatggcgtaacgacacttccgacacatctatcaaattatttggataaaac 5882842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 37065009 - 37064946
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  37065009 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacatatttaccccttataa 37064946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 40071705 - 40071642
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  40071705 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 40071642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 41555521 - 41555568
Alignment:
Q  222 tgaccttctcaaattttaaagcaaaatttgacaattttaccccttata 269  Q
    ||||||||||||||||| ||||  |||||||||| |||||||||||||    
T  41555521 tgaccttctcaaatttttaagcttaatttgacaagtttaccccttata 41555568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 54438413 - 54438350
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||| ||||||| ||||  |||||||||||||||  ||||||||||||||    
T  54438413 ttgtcccacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataa 54438350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 925383 - 925329
Alignment:
Q  216 aatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  925383 aatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 925329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 28910395 - 28910349
Alignment:
Q  224 accttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    ||||||||| ||||| ||||| |||||||||| ||||||||||||||    
T  28910395 accttctcagatttttaagcagaatttgacaaatttaccccttataa 28910349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 25031299 - 25031432
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcaca-tcaaagct 99  Q
    |||| |||||||||||  ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| | ||| ||    
T  25031299 ataactcttaagttgagtgtgtaacgccacttccgacacatctataaaatcatttggataaaactcaatcatcctcaataatttgttcacattaaaaact 25031398  T
Q  100 acaaatgactttgcaggactcaaacatgaaacac 133  Q
     |||||||||||||||||||||| ||||||||||    
T  25031399 gcaaatgactttgcaggactcaagcatgaaacac 25031432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 9477980 - 9478113
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||||||||||||||  | ||||||| ||||||  ||||||||||||||||||||||||||||||||||||  | |||||||| |||||||| ||||||    
T  9477980 ataattcttaagttgacagcgtaacactacttccggcacatctataaaatcatttggataaaactcagtcatactcaataatttgttcacatcaaaagct 9478079  T
Q  100 acaaatgactttgcaggactcaaacatgaaacac 133  Q
     ||||||| ||||  |||||||||||||||||||    
T  9478080 gcaaatgattttgtgggactcaaacatgaaacac 9478113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 34912666 - 34912799
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||||| |||||||| |||||||| |||||||||  |||||||||||||||||||||||||  |||  |||| | |||||||| |||||||| |||| |    
T  34912666 ataattcctaagttgatggtgtaacgccacttccagaacatctataaaatcatttggataaatttcaaccatcctcaataatttgttcacatcaaaaggt 34912765  T
Q  100 acaaatgactttgcaggactcaaacatgaaacac 133  Q
     ||||||||||||| ||| |||||||||||||||    
T  34912766 gcaaatgactttgcgggattcaaacatgaaacac 34912799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 1016737 - 1016630
Alignment:
Q  27 ccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgactttgcaggactcaaaca 125  Q
    |||||||| ||||||||| ||||||||||||||||| ||||| |||| | |||||||| |||||||| |||||   ||||||||||||||||||||||||    
T  1016737 ccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttgcaggactcaaaca 1016638  T
Q  126 tgaaacac 133  Q
    ||||||||    
T  1016637 tgaaacac 1016630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 9539375 - 9539253
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    |||||||||||||||| ||  |||| ||||||||||||| |||||||||| |||||||||||||||| ||||  | |||||||| ||||| || |||| |    
T  9539375 ataattcttaagttgatggcataacgccacttccaacacttctataaaattatttggataaaactcaatcattctcaataattttttcacgtcaaaagtt 9539276  T
Q  100 acaaatgactttgcaggactcaa 122  Q
    |||||||||| | ||||||||||    
T  9539275 acaaatgactctacaggactcaa 9539253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6227037 - 6227150
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||||||||||||||  ||||||| | ||||||   ||||||||||||| |||||||||||| ||||||||| | |||||||| |||||||| |||| |    
T  6227037 ataattcttaagttgagtgtgtaacgctacttccggaacatctataaaataatttggataaaattcagtcatcctcaataatttgttcacatcaaaagtt 6227136  T
Q  100 acaaatgactttgc 113  Q
     |||||||||||||    
T  6227137 gcaaatgactttgc 6227150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 10780931 - 10780837
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaa 96  Q
    |||||| |||||||||  | ||||| |||||| | ||||||||||||||| |||||||||||||||||||| | ||| ||| || |||||||||||    
T  10780931 ataattattaagttgagtgcgtaacgccactttcgacacatctataaaattatttggataaaactcagtcacccttattaa-ttgttcacatcaaa 10780837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 46370971 - 46371034
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||| ||||||||||||||    
T  46370971 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacaaatttaccccttataa 46371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 42311358 - 42311302
Alignment:
Q  28 cacttccaacacatctataaaatcatttggataaaactcagtcatcattaataattt 84  Q
    ||||||| ||| ||||||||||||||||||||||||||||| |||| | ||||||||    
T  42311358 cacttccgacatatctataaaatcatttggataaaactcagacatcctcaataattt 42311302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 1929472 - 1929409
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  1929472 ttgtcccacaatacttgaccttctcatatttctaagcaaaatttgacagatttaccccttataa 1929409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 46862600 - 46862663
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||| | ||||| |||||||||||||||  ||||||||||||||    
T  46862600 ttgtcccacaatacttgaccttcttagatttttaagcaaaatttgacagatttaccccttataa 46862663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 50777041 - 50777104
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||| ||||||  |||||||||||||||  ||||||||||||||    
T  50777041 ttgtcccataatacttgaccttcttaaatttctaagcaaaatttgacagatttaccccttataa 50777104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 28036957 - 28036894
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  |||| |||||||||    
T  28036957 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttatcccttataa 28036894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 38817818 - 38817881
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||  |||| |||||||||||  ||||||||||||| || ||||||||||||||    
T  38817818 ttgtcccataatatttgactttctcaaatttctaagcaaaatttgataaatttaccccttataa 38817881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 39151153 - 39151090
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||| | ||||  |||||||||||||||  ||||||||||||||    
T  39151153 ttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataa 39151090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 40562690 - 40562627
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| |||| |||||| ||||| ||||| ||||||| || ||||||||||||||    
T  40562690 ttgtcccacaatacttgacattctcatatttttaagcagaatttgataaatttaccccttataa 40562627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 47603809 - 47603766
Alignment:
Q  227 ttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||    
T  47603809 ttctcaaatttttaagcagaatttgacaagtttaccccttataa 47603766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 8229124 - 8229170
Alignment:
Q  224 accttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    ||||||| | ||||| |||||||||||||||| ||||||||||||||    
T  8229124 accttcttagatttttaagcaaaatttgacaaatttaccccttataa 8229170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 44873641 - 44873774
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||||||||||||||  | |||||||||||| |   ||||||||||||||||||||||||||||||  |||| | |||||||| |||||||| ||||||    
T  44873641 ataattcttaagttgagtgggtaacaccactttcggtacatctataaaatcatttggataaaactcaaccatcttcaataatttgttcacatcaaaagct 44873740  T
Q  100 acaaatgactttgcaggactcaaacatgaaacac 133  Q
     ||||||||||| ||  |||||||||||||||||    
T  44873741 gcaaatgactttacaaaactcaaacatgaaacac 44873774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 45485927 - 45485820
Alignment:
Q  27 ccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgactttgcaggactcaaaca 125  Q
    |||||||| ||||||||| ||||||||||||||||| ||||| |||| | |||||||| |||||||| |||||   ||||||||||||||||||||||||    
T  45485927 ccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttgcaggactcaaaca 45485828  T
Q  126 tgaaacac 133  Q
    ||||||||    
T  45485827 tgaaacac 45485820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 32161143 - 32161017
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    |||||||||||||||| || ||||||||||||   | |||||||||||||||||||| ||||| ||| ||| | | ||||||||||||||||| |||| |    
T  32161143 ataattcttaagttgatggcgtaacaccacttttgatacatctataaaatcatttgggtaaaagtcaatcaccttcaataatttattcacatcaaaagtt 32161044  T
Q  100 acaaatgactttgcaggactcaaacat 126  Q
     |||||| |||||| ||||||||||||    
T  32161043 gcaaatggctttgcgggactcaaacat 32161017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 11146820 - 11146897
Alignment:
Q  213 caaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataattgattgtatggtctccatgt 291  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  11146820 caaaatacttgaccttatcaaattttaaaacaaaatttgacaattttactccttataattgcttgtatgg-ctccatgt 11146897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 2148772 - 2148867
Alignment:
Q  37 cacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaa-gctacaaatgactttgcaggactcaaacatgaaac 131  Q
    ||||| || |||||||||||||||||  ||  ||||| | |||||||||||||||||||| | |||||||||||||||| ||||||||||||||||    
T  2148772 cacatttaaaaaatcatttggataaagttcgatcatcctcaataatttattcacatcaaaagttacaaatgactttgcaagactcaaacatgaaac 2148867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 6802511 - 6802416
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaa 96  Q
    ||||||| |||||||| || |||||||||||||  ||||||| ||||||||||||| |||||| |||  |||| |||||||||| |||||||||||    
T  6802511 ataattcctaagttgatggcgtaacaccacttctgacacatccataaaatcatttgaataaaagtcaaccatccttaataatttgttcacatcaaa 6802416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 24556655 - 24556564
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacat 92  Q
    ||||||| ||| |||| || ||||| ||||||||| ||| |||| |||||||||||||||||| ||||||||| | |||||||| |||||||    
T  24556655 ataattcctaacttgatggcgtaacgccacttccaccacttctacaaaatcatttggataaaattcagtcatcctcaataatttgttcacat 24556564  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 29866520 - 29866615
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatcaaa 96  Q
    |||||||||||||||| |||||||   ||||||| ||||||||||||||||||||||||||| | || ||||| |  |||| || |||||||||||    
T  29866520 ataattcttaagttgatggtgtaatgtcacttccgacacatctataaaatcatttggataaaccccaatcatcttcgataagttgttcacatcaaa 29866615  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 9753814 - 9753877
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||||||||  ||||| |||||||||| |||||| |||||||    
T  9753814 ttgtcccataatacttgaccttctcaaatttctaagcagaatttgacaaatttacctcttataa 9753877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 27820817 - 27820880
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  27820817 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 27820880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 39906954 - 39907017
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  39906954 ttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 39907017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 12738622 - 12738559
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||| ||| ||||  ||||| |||||||||| ||||||||||||||    
T  12738622 ttgtcccataatacttgaccttatcagatttctaagcagaatttgacaaatttaccccttataa 12738559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 13243787 - 13243739
Alignment:
Q  222 tgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    ||||||||||||||||  ||||| |||||||||| || |||||||||||    
T  13243787 tgaccttctcaaatttctaagcagaatttgacaaattcaccccttataa 13243739  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 14607514 - 14607382
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    |||||||||||||||| ||| ||||  |||||||||||  |||| |||||||||||||||||| ||||||| | | |||||||| |||||||| ||| ||    
T  14607514 ataattcttaagttgatggtctaacgtcacttccaacatttctaaaaaatcatttggataaaagtcagtcaacctcaataatttcttcacatcaaaaact 14607415  T
Q  100 acaaatgactttgcaggactcaaacatgaaacac 133  Q
    || ||||||||||| |||||||||||||||||||    
T  14607414 ac-aatgactttgcgggactcaaacatgaaacac 14607382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 18817293 - 18817400
Alignment:
Q  27 ccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgactttgcaggactcaaaca 125  Q
    |||||||| ||||||||| ||||||||||||||||| ||||| |||| | |||||||| |||||||| |||||   ||||||||||||||||||||||||    
T  18817293 ccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttgcaggactcaaaca 18817392  T
Q  126 tgaaacac 133  Q
    ||||||||    
T  18817393 tgaaacac 18817400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 24902062 - 24902169
Alignment:
Q  27 ccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagctacaaatgactttgcaggactcaaaca 125  Q
    |||||||| ||||||||| ||||||||||||||||| ||||| |||| | |||||||| |||||||| |||||   ||||||||||||||||||||||||    
T  24902062 ccacttccgacacatctacaaaatcatttggataaagctcagccatcctcaataatttgttcacatcaaaagcagaaaatgactttgcaggactcaaaca 24902161  T
Q  126 tgaaacac 133  Q
    ||||||||    
T  24902162 tgaaacac 24902169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 2919785 - 2919651
Alignment:
Q  8 ttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcaca-tcaaagctacaaatg 106  Q
    ||||||||| |||||||| ||| ||||||||||||||| |||| |||| |||||||||||  |||| | |||||||| |||||| | |||||| |||       
T  2919785 ttaagttgatggtgtaacgccaattccaacacatctattaaatgattttgataaaactcatacatcctcaataatttgttcacattaaaagctgcaa--- 2919689  T
Q  107 actttgcaggactcaaacatgaaacacgctataaaagaga 146  Q
      ||||||||| ||||||||||||||| ||||||||||||    
T  2919688 --tttgcaggattcaaacatgaaacacactataaaagaga 2919651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 6689551 - 6689641
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcaca 91  Q
    |||||| ||||||||| |||||||| |||||| | ||| |||||||||||||||||||||||||||| ||||| | |||||||| ||||||    
T  6689551 ataatttttaagttgatggtgtaacgccactttcgacatatctataaaatcatttggataaaactcaatcatcttcaataatttgttcaca 6689641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 21883612 - 21883725
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttattcacatc-aaagct 99  Q
    ||||||||||||||||  ||||||| |||||| |    ||||||||||| ||||||||||||| ||||||||| | |||||||| |||||||| ||||||    
T  21883612 ataattcttaagttgagtgtgtaacgccactttcggagcatctataaaaacatttggataaaattcagtcatcctcaataatttgttcacatcaaaagct 21883711  T
Q  100 acaaatgactttgc 113  Q
     ||| |||||||||    
T  21883712 gcaagtgactttgc 21883725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 19266954 - 19266869
Alignment:
Q  1 ataattcttaagttgaaggtgtaacaccacttccaacacatctataaaatcatttggataaaactcagtcatcattaataatttat 86  Q
    |||||| ||||||||| || ||||| |||||||| |||||||||| ||||||||||||||||| ||| ||||  | ||||||||||    
T  19266954 ataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaattcaatcattctcaataatttat 19266869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 13042016 - 13042079
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||| |||||||||||||||  ||||||||||||||    
T  13042016 ttgtcccacaatacttgaccttctcagatttttaagcaaaatttgacagatttaccccttataa 13042079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 1870587 - 1870641
Alignment:
Q  216 aatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    ||||| ||||||||||| ||||| ||||| |||||||||| ||||||||||||||    
T  1870587 aatacttgaccttctcagatttttaagcagaatttgacaaatttaccccttataa 1870641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 12350316 - 12350378
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttata 269  Q
    |||||||| ||||  ||||||||||||||||  |||||||||||||||  |||||||||||||    
T  12350316 ttgtcccacaatatttgaccttctcaaatttctaagcaaaatttgacagatttaccccttata 12350378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 13210397 - 13210451
Alignment:
Q  216 aatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    ||||| ||||||||||||||||| ||||| |||||||||| ||||||| ||||||    
T  13210397 aatacttgaccttctcaaatttttaagcagaatttgacaaatttacccattataa 13210451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 16435823 - 16435886
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||||||||  ||| |||||||||||  |||||||| |||||    
T  16435823 ttgtcccacaatacttgaccttctcaaatttctaaggaaaatttgacagatttaccccatataa 16435886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 28541840 - 28541780
Alignment:
Q  210 tcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    ||||| ||||| ||||||||||| ||||  | |||||||||||||  ||||||||||||||    
T  28541840 tcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttaccccttataa 28541780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 31833821 - 31833761
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttacccctta 267  Q
    ||||||||  |||| ||||||||||| ||||| ||||| |||||||||| |||| ||||||    
T  31833821 ttgtcccacgatacttgaccttctcagatttttaagcataatttgacaaatttatccctta 31833761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 16401 - 16464
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||||||||  |||||||||||||||  ||||||| ||||||    
T  16401 ttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccctttataa 16464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 69797 - 69860
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||||||||  |||||||||||||||  |||||| |||||||    
T  69797 ttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccgcttataa 69860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 1023 - 1086
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||| ||||||| ||||| |||||  ||||||||| ||||||||||||||    
T  1023 ttgtcccacaatacttgagcttctcagatttttaagcaggatttgacaaatttaccccttataa 1086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 3858 - 3921
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  |||||| |||||||    
T  3858 ttgtcccataatacttgaccttctcagatttctaagcaaaatttgacagatttacctcttataa 3921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 10273 - 10210
Alignment:
Q  207 ttgtcccaaaatacctgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 270  Q
    |||||||| ||||| ||||||||||| ||||  |||||||||||||||  |||| |||||||||    
T  10273 ttgtcccacaatacttgaccttctcatatttctaagcaaaatttgacagatttatcccttataa 10210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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