View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20283_low_2 (Length: 362)
Name: NF20283_low_2
Description: NF20283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20283_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 349
Target Start/End: Complemental strand, 39223348 - 39223009
Alignment:
| Q |
10 |
agaagaatgggaccacattttgatatccctccggcatgtctcacagcatttacaactatcttcatgcttataagcattgtagtctatgaccttgcttttg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39223348 |
agaagaatgggaccacattttgatatccctccggcatgtctcacggcatttacaactatcttcatgcttataagcattgtagtgtatgaccttgcttttg |
39223249 |
T |
|
| Q |
110 |
tgccaatgatccggagatacacaaagaaccccagaggaatcacactgttgcagagactaggaattggcctagtgttgcacatcgctataatggtcactgc |
209 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39223248 |
tgcccatgatccggcgatacacaaagaaccccagaggaatcacactgtttcagagactaggaattggcctagtgttgcacattgctataatggtcactgc |
39223149 |
T |
|
| Q |
210 |
atgcttggctgaaaggaagagactcagtgttgcaagagaaaacaacctctttggccgtcatgatacaattcccctcactatttttattctcctccctcag |
309 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39223148 |
atgcttggctgagaggaagagactccgtgttgcaagagaaaacaacctctttggccggcatgatacaattcccctcactatttttattctcctccctcag |
39223049 |
T |
|
| Q |
310 |
tttgccttggctgggattgctgataactttgttgaaattg |
349 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
39223048 |
tttgccttggctgggattgctgataactttgttgaaattg |
39223009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 39215731 - 39215456
Alignment:
| Q |
10 |
agaagaatgggaccacattttgatatccctccggcatgtctcacagcatttacaactatcttcatgcttataagcattgtagtctatgaccttgcttttg |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39215731 |
agaagaatgggaccacattttgatatccctccagcatgtctcacagcatttacaactatcttcatgcttataagcattatagtctatgaccttgcttttg |
39215632 |
T |
|
| Q |
110 |
tgccaatgatccggagatacacaaagaaccccagaggaatcacactgttgcagagactaggaattggcctagtgttgcacatcgctataatggtcactgc |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39215631 |
tgccaatgatccggagatacacaaagaaccccagagggatcacactgttgcagagactaggaattggcctagtgttgcacatcgctataatggtcactgc |
39215532 |
T |
|
| Q |
210 |
atgcttggctgaaaggaagagactcagtgttgcaagagaaaacaacctctttggccgtcatgatacaattcccctc |
285 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39215531 |
atgcttggctgaaaggaagagactcagtgttgcaagagaaaacaacctctttggccgacatgatacaattcccctc |
39215456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 349
Target Start/End: Complemental strand, 39193995 - 39193656
Alignment:
| Q |
10 |
agaagaatgggaccacattttgatatccctccggcatgtctcacagcatttacaactatcttcatgcttataagcattgtagtctatgaccttgcttttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||| | ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39193995 |
agaagaatgggaccacattttgatatccctccagcctgtttaacaacatttaaaactatcttcatgcttataagcattgtagtctatgaccttgcttttg |
39193896 |
T |
|
| Q |
110 |
tgccaatgatccggagatacacaaagaaccccagaggaatcacactgttgcagagactaggaattggcctagtgttgcacatcgctataatggtcactgc |
209 |
Q |
| |
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| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39193895 |
ttccaataatccggcgatacacaaagaaccccagaggaatcacactgttgcagagactaggaattggcctagtgttgaacatcgctataatggtcactgc |
39193796 |
T |
|
| Q |
210 |
atgcttggctgaaaggaagagactcagtgttgcaagagaaaacaacctctttggccgtcatgatacaattcccctcactatttttattctcctccctcag |
309 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39193795 |
atgcttggctgagaggaagagactccgtgttgcaagagaaaacaacctctttggccggcatgatacaattccccttactatttttattctcctccctcag |
39193696 |
T |
|
| Q |
310 |
tttgccttggctgggattgctgataactttgttgaaattg |
349 |
Q |
| |
|
|||||| ||| ||||||||| ||| ||| || ||||||| |
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|
| T |
39193695 |
tttgccctgggagggattgctaataccttcgtggaaattg |
39193656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 39177271 - 39176935
Alignment:
| Q |
13 |
agaatgggaccacattttgatatccctccggcatgtctcacagcatttacaactatcttcatgcttataagcattgtagtctatgaccttgcttttgtgc |
112 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
39177271 |
agaatgggaccccattttgatattcctccggcgtgtctgacagcatttgtaactatcttcatgcttataagcattgtagtctatgaccgtgtttttgtgc |
39177172 |
T |
|
| Q |
113 |
caatgatccggagatacacaaagaaccccagaggaatcacactgttgcagagactaggaattggcctagtgttgcacatcgctataatggtcactgcatg |
212 |
Q |
| |
|
|| |||| ||| | |||||||||||||||||||| || ||| || | || ||||||||||||||||| ||| ||||| || |||||||||||||||||| |
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|
| T |
39177171 |
cagtgattcggcggtacacaaagaaccccagagggataacaatgctacaaagactaggaattggccttgtgctgcacgtcattataatggtcactgcatg |
39177072 |
T |
|
| Q |
213 |
cttggctgaaaggaagagactcagtgttgcaagagaaaacaacctctttggccgtcatgatacaattcccctcactatttttattctcctccctcagttt |
312 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||||| |||||||||| ||||| || |||| || |||||||||||||| || || |||||| |
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|
| T |
39177071 |
tttggctgagaggaagcgactaagtgttgcaagagaaaatggtctctttggccagcatgacacccttcctcttactatttttattctgctaccccagttt |
39176972 |
T |
|
| Q |
313 |
gccttggctgggattgctgataactttgttgaaattg |
349 |
Q |
| |
|
|||||| | ||| ||||||||||||| ||||| |||| |
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|
| T |
39176971 |
gccttgacaggggttgctgataacttcgttgatattg |
39176935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 349
Target Start/End: Complemental strand, 39256984 - 39256645
Alignment:
| Q |
10 |
agaagaatgggaccacattttgatatccctccggcatgtctcacagcatttacaactatcttcatgcttataagcattgtagtctatgaccttgcttttg |
109 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| ||||| |||| ||| | |||||||||||| |||||||||||||||||||| | |||||||| |
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|
| T |
39256984 |
agaagaatgggaccccattttgcaatcccagcggcaagtctcctagcagttatagttatcttcatgctgataagcattgtagtctatgatcgtgcttttg |
39256885 |
T |
|
| Q |
110 |
tgccaatgatccggagatacacaaagaaccccagaggaatcacactgttgcagagactaggaattggcctagtgttgcacatcgctataatggtcactgc |
209 |
Q |
| |
|
| || |||| || || ||||||||||| ||||| |||||| | | |||||||||||| ||||||| |||||| | | | ||| | | ||| |
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|
| T |
39256884 |
ttcctgtgattaggtcctatacaaagaaccctagagggatcacaatcctacagagactaggagttggccttacattgcacgttattgtgatgcttattgc |
39256785 |
T |
|
| Q |
210 |
atgcttggctgaaaggaagagactcagtgttgcaagagaaaacaacctctttggccgtcatgatacaattcccctcactatttttattctcctccctcag |
309 |
Q |
| |
|
| | |||| ||| ||||||||||||| |||||||||||||||||||||||| |||| ||||||||| | || || |||||||| |||| | ||||| |
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|
| T |
39256784 |
aagtttggttgagaggaagagactcaatgttgcaagagaaaacaacctcttaggcctgcatgatacactacctcttactattttcgctctctttcctcaa |
39256685 |
T |
|
| Q |
310 |
tttgccttggctgggattgctgataactttgttgaaattg |
349 |
Q |
| |
|
||||| || || ||| ||||||||| |||||||||||||| |
|
|
| T |
39256684 |
tttgctttagcaggggttgctgatagctttgttgaaattg |
39256645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 105 - 338
Target Start/End: Complemental strand, 39238920 - 39238687
Alignment:
| Q |
105 |
ttttgtgccaatgatccggagatacacaaagaaccccagaggaatcacactgttgcagagactaggaattggcctagtgttgcacatcgctataatggtc |
204 |
Q |
| |
|
||||||||| |||||||| ||||| || || || |||||||||||| | | || ||| ||||||||||||| |||||| ||||| || | | ||| |
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|
| T |
39238920 |
ttttgtgcctatgatccgactctacactaaaaatcctagaggaatcacaatactacaaagaataggaattggccttgtgttgaacatcattacattagtc |
39238821 |
T |
|
| Q |
205 |
actgcatgcttggctgaaaggaagagactcagtgttgcaagagaaaacaacctctttggccgtcatgatacaattcccctcactatttttattctcctcc |
304 |
Q |
| |
|
| ||||||||||| ||| || |||||||||| ||||||||||||||| |||||||| | | ||||||| || || || |||||||| || ||||||| |
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|
| T |
39238820 |
attgcatgcttggttgagagaaagagactcaatgttgcaagagaaaaaaacctcttagacatgcatgataagatccctcttactattttcatcctcctcc |
39238721 |
T |
|
| Q |
305 |
ctcagtttgccttggctgggattgctgataactt |
338 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |
|
|
| T |
39238720 |
ctcagtttgccttgtcagggattgctgataactt |
39238687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 39260232 - 39259912
Alignment:
| Q |
14 |
gaatgggaccacattttgatatccctccggcatgtctcacagcatttacaactatcttcatgcttataagcattgtagtctatgaccttgcttttgtgcc |
113 |
Q |
| |
|
|||||||| | |||||||| || ||||| |||||||||| ||||||| || |||||||||||| ||||| ||||| |||| || | | ||||| || |
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|
| T |
39260232 |
gaatgggagctcattttgaaatacctccagcatgtctcatagcatttgtaaatatcttcatgctgataagtgttgtaatctacgatcgagtctttgttcc |
39260133 |
T |
|
| Q |
114 |
aatgatccggagatacacaaagaaccccagaggaatcacactgttgcagagactaggaattggcctagtgttgcacatcgctataatggtcactgcatgc |
213 |
Q |
| |
|
| | ||||| | ||||| ||||| || ||||| |||||| || | |||||||||||||||||||| ||| ||||| || | ||||| | ||||||| |
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|
| T |
39260132 |
agtaatccgacgctacacgaagaatcctagagggatcacaatgctacagagactaggaattggccttgtgatgcacgtcattgtaatgattgttgcatgc |
39260033 |
T |
|
| Q |
214 |
ttggctgaaaggaagagactcagtgttgcaagagaaaacaacctctttggccgtcatgatacaattcccctcactatttttattctcctccctcagtttg |
313 |
Q |
| |
|
| || || ||||||||||||||||||||||||||||| || || |||| | |||||||| || || |||||||| |||||| ||||||| || | |
|
|
| T |
39260032 |
cttatcgagagaaagagactcagtgttgcaagagaaaacaatcttttaggcccgctcgatacaataccacttactattttcattctcgtccctcaattcg |
39259933 |
T |
|
| Q |
314 |
ccttggctgggattgctgata |
334 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
39259932 |
ctttgatggggattgctgata |
39259912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 39244788 - 39244638
Alignment:
| Q |
35 |
tccctccggcatgtctcacagcatttacaactatcttcatgcttataagcattgtagtctatgaccttgcttttgtgccaatgatccggagatacacaaa |
134 |
Q |
| |
|
||||||| ||| |||||| ||||||| | ||||||| || |||||||| |||| ||||||| | || |||||| || || ||||| | |||||||| |
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|
| T |
39244788 |
tccctccagcaagtctcatagcatttgtacatatcttcctggctataagcactgtaatctatgatcgtgtttttgttcctattatccgacgctacacaaa |
39244689 |
T |
|
| Q |
135 |
gaaccccagaggaatcacactgttgcagagactaggaattggcctagtgtt |
185 |
Q |
| |
|
||| || |||||||| ||| || | || ||| ||||||||||||| ||||| |
|
|
| T |
39244688 |
gaatccaagaggaattacaatgctacaaagaataggaattggccttgtgtt |
39244638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 39250745 - 39250583
Alignment:
| Q |
13 |
agaatgggaccacattttgatatccctccggcatgtctcacagcatttacaactatcttcatgcttataagcattgtagtctatgaccttgcttttgtgc |
112 |
Q |
| |
|
||||||||| | |||||| | ||||||| ||| |||||| ||||||| | ||| |||||| |||||||||||||| ||||||| ||| |||||| | |
|
|
| T |
39250745 |
agaatgggagctcattttaaagtccctccagcaagtctcatagcatttgtacatattttcatggttataagcattgtaatctatgattttgtttttgttc |
39250646 |
T |
|
| Q |
113 |
caatgatccggagatacacaaagaaccccagaggaatcacactgttgcagagactaggaattggc |
177 |
Q |
| |
|
| || ||||| | ||||| |||| || |||||||| ||| || | || ||||||||||||||| |
|
|
| T |
39250645 |
ctattatccgacgctacac--agaatccaagaggaattacaatgctacaaagactaggaattggc |
39250583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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