View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20283_low_5 (Length: 237)
Name: NF20283_low_5
Description: NF20283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20283_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 12824851 - 12824997
Alignment:
| Q |
76 |
aatcggcaaaatattattaacgccatccttgtaagacgcaaggtatagacgacaaaaagagacatacaaattgccgcatatatatggaacaccaaaacac |
175 |
Q |
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| T |
12824851 |
aatcggcaaaatattattaacaccatccctgtaagccgcaaggtatggacgacaaaaagagacatacaaaatgccgcatatatatggaataccaaaacac |
12824950 |
T |
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| Q |
176 |
caataacaccctaataacccttagcctccacaacctatgacagtagt |
222 |
Q |
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| T |
12824951 |
caataacaccctaataacccttagcctccacaacctatgacagtagt |
12824997 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 27180682 - 27180649
Alignment:
| Q |
147 |
tgccgcatatatatggaacaccaaaacaccaata |
180 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
27180682 |
tgccgcatatatacggaacaccaaaacaccaata |
27180649 |
T |
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