View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20284_high_1 (Length: 542)
Name: NF20284_high_1
Description: NF20284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20284_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 15 - 526
Target Start/End: Original strand, 6865520 - 6866031
Alignment:
| Q |
15 |
attcttgcaaaatgaagagaatgaaaatgaagatcgatcatatgaatattaaaaattctaagattgaattataagcttatagattagtgttgttctggtc |
114 |
Q |
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| T |
6865520 |
attcttgcaaaatgaagagaatgaaaatgaagatcgatcatatgaatattaaaaattctaagattgaattataagcttatagattagtgttgttctggtc |
6865619 |
T |
|
| Q |
115 |
tgtttttatattttgtcaatccagtgaaaaataaaaagaagagggtttgattcaaaatgtatttaaacaaaagaagttaaacaaatttaagacatcaaca |
214 |
Q |
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| T |
6865620 |
tgtttttatattttatcaatccagtgaaaaataaaaagaagagggtttgattcaaaatctatttaaacaaaagaagttaaacaaatttaagacatcaaca |
6865719 |
T |
|
| Q |
215 |
cttaccaaatatttctgcatgaatgcaatgcgaaagaagtttcgcaccataataacaattgttgtcgagtagggtgaaccatcgagtcttggaaaaaaga |
314 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6865720 |
cttaccaaatatttgtgcatgaatgcaatgcgaaagaagtttagcaccataataacaattgttgtcgagtagcgtgaaccatcgagtcttggaaaaaaga |
6865819 |
T |
|
| Q |
315 |
aatctagttacttttttgtgtcccttggttgcggctagaagtactggaatgtcacccttatcgtcatcagctttgattttaatggttagtagatcatttc |
414 |
Q |
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| T |
6865820 |
aatctagtcacttttttgtgtcccttggttgcggctagaagtactggaatgtcacccttatcgtcatcagctttgattttcatggttagtagatcatttc |
6865919 |
T |
|
| Q |
415 |
ctcctttgttaagcatccactcaacaatttgtatatcgtcggttgatttaacagcaagagcaaaaggtgtgtagccctcccaatcttcctctgtcagcaa |
514 |
Q |
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| T |
6865920 |
ctcctttgttaagcatccactcgacaattttaatatcgtcggttgatttaacagcaagagcaaaaggtgtgtagccctcccaatcttcctctgtcagcaa |
6866019 |
T |
|
| Q |
515 |
tgcccccatttc |
526 |
Q |
| |
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|||||||||||| |
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| T |
6866020 |
tgcccccatttc |
6866031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 168 - 526
Target Start/End: Original strand, 6132947 - 6133306
Alignment:
| Q |
168 |
aaaatgtatttaaacaaaagaa-gttaaacaaatttaagacatcaacacttaccaaatatttctgcatgaatgcaatgcgaaagaagtttcgcaccataa |
266 |
Q |
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|||| ||||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
6132947 |
aaaaagtatttaaacaaaagaatgttaaatgaatttcaaacatcaacacttaccaaatatttctgcatggatgcaatatgaaagaagtttagcaccataa |
6133046 |
T |
|
| Q |
267 |
taacaattgttgtcgagtagggtgaaccatcgagtcttggaaaaaagaaatctagttacttttttgtgtcccttggttgcggctagaagtactggaatgt |
366 |
Q |
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| T |
6133047 |
taataattgttgtcagttaaagtgaaccatcgagtcatggaaaatagaaatctcgtcatttctttgtggccctttgctgcggcaagaagtactggaatgt |
6133146 |
T |
|
| Q |
367 |
cacccttatcgtcatcagctttgattttaatggttagtagatcatttcctcctttgttaagcatccactcaacaatttgtatatcgtcggttgatttaac |
466 |
Q |
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|||| ||| | ||||||||||| ||||| || || ||||||||||||||||| || ||||||||||| ||| |||| | |||| || ||||||||| | |
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| T |
6133147 |
cacctttaccatcatcagcttttattttcattgtcagtagatcatttcctcccttagcaagcatccacttaaccatttttgtatcatctgttgatttagc |
6133246 |
T |
|
| Q |
467 |
agcaagagcaaaaggtgtgtagccctcccaatcttcctctgtcagcaatgcccccatttc |
526 |
Q |
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||| |||||||| |||||||| |||||||| |||| |||||||||||||||||||||||| |
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| T |
6133247 |
agcgagagcaaacggtgtgtatccctcccagtctttctctgtcagcaatgcccccatttc |
6133306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 206 - 525
Target Start/End: Complemental strand, 6088684 - 6088365
Alignment:
| Q |
206 |
acatcaacacttaccaaatatttctgcatgaatgcaatgcgaaagaagtttcgcaccataataacaattgttgtcgagtagggtgaaccatcgagtcttg |
305 |
Q |
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|||| ||| ||||||| ||| ||| ||||| ||||| || ||||||||||| ||||||||| |||||| ||| || ||||||| ||||| |||| ||| |
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| T |
6088684 |
acatgaacgcttaccatataattcggcatggatgcagtgtgaaagaagtttagcaccataaaaacaatcgttctcctctagggtggaccatggagttttg |
6088585 |
T |
|
| Q |
306 |
gaaaaaagaaatctagttacttttttgtgtcccttggttgcggctagaagtactggaatgtcacccttatcgtcatcagctttgattttaatggttagta |
405 |
Q |
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|||||||||||||| || | || |||||| || |||||||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||| | |
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| T |
6088584 |
gaaaaaagaaatctcgtcatttctttgtggccattggttgcggctagaagtactggaatgtcacctttattatcattagctttgattttcatggttagaa |
6088485 |
T |
|
| Q |
406 |
gatcatttcctcctttgttaagcatccactcaacaatttgtatatcgtcggttgatttaacagcaagagcaaaaggtgtgtagccctcccaatcttcctc |
505 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||| ||| |
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| T |
6088484 |
gatcagctcctcctttattaagcatccactcaacaatttgtatatcattagttgatttaacagcaagagcaaagggtgtgtatccctcccaatctctctc |
6088385 |
T |
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| Q |
506 |
tgtcagcaatgcccccattt |
525 |
Q |
| |
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||||| |||||||||||||| |
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| T |
6088384 |
tgtcaacaatgcccccattt |
6088365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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