View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20284_high_10 (Length: 241)
Name: NF20284_high_10
Description: NF20284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20284_high_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 16684844 - 16685069
Alignment:
| Q |
19 |
atacttgtactggaatacaagtgtcttctagttcaattaggaaactgaaacgtatggagttggtccacaagcatatgaagannnnnnnnnnnnnng---a |
115 |
Q |
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| T |
16684844 |
atacttgtactggaatacaagtgtcttctagttcaattaggaaactgaaacgtatggagttggtccacaagcatatgaagatttttttttttttttttta |
16684943 |
T |
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| Q |
116 |
ctaaagcatatgaagattttgtttgataatatctttctactaaatggttgcaattccatgcaagtatgtgttagatatagtttcagattttagctttgag |
215 |
Q |
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| T |
16684944 |
ctaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattttagctttgag |
16685043 |
T |
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| Q |
216 |
actattccatatggtttacctccaac |
241 |
Q |
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| T |
16685044 |
actattccatatggtttacctccaac |
16685069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 4559456 - 4559274
Alignment:
| Q |
26 |
tactggaatacaagtgtcttctagttcaattaggaaactgaaacgtatgga---gttggtccacaagcatatgaagannnnnnnnnnnnnngactaaagc |
122 |
Q |
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|||| ||||| ||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
4559456 |
tacttgaataaaagtgtcatctagttcaattttgaaactgaaacgtatggatcagttggtccacaagcatatgaagattttccttttttttgactaaagc |
4559357 |
T |
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| Q |
123 |
atatgaagattttgtttgataatatctttctactaaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
205 |
Q |
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| T |
4559356 |
atatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
4559274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 4566253 - 4566167
Alignment:
| Q |
119 |
aagcatatgaagattttgtttgataatatctttctactaaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
205 |
Q |
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| T |
4566253 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatgtagtttcagattt |
4566167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 4573267 - 4573181
Alignment:
| Q |
119 |
aagcatatgaagattttgtttgataatatctttctactaaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
205 |
Q |
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| T |
4573267 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcatattt |
4573181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 4573328 - 4573255
Alignment:
| Q |
26 |
tactggaatacaagtgtcttctagttcaattaggaaactgaaacgtatggagttggtccacaagcatatgaaga |
99 |
Q |
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| T |
4573328 |
tacttgaatagaagtgtcttctagttcaattttgaaactgaaacgtatagagttggtccacaagcatatgaaga |
4573255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 4566314 - 4566241
Alignment:
| Q |
26 |
tactggaatacaagtgtcttctagttcaattaggaaactgaaacgtatggagttggtccacaagcatatgaaga |
99 |
Q |
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| T |
4566314 |
tacttgaatagaagtgccttctagttcaattttgaaactgaaacgtatagagttggtccacaagcatatgaaga |
4566241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 4488939 - 4488979
Alignment:
| Q |
201 |
gattttagctttgagactattccatatggtttacctccaac |
241 |
Q |
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| T |
4488939 |
gattttagctttgagactattccagatggtttaactccaac |
4488979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 4587018 - 4586978
Alignment:
| Q |
201 |
gattttagctttgagactattccatatggtttacctccaac |
241 |
Q |
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| T |
4587018 |
gattttagctttgagactattccagatggtttaactccaac |
4586978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 4558511 - 4558471
Alignment:
| Q |
201 |
gattttagctttgagactattccatatggtttacctccaac |
241 |
Q |
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| T |
4558511 |
gattttagctttgagactattccggatggtttaactccaac |
4558471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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