View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20284_high_2 (Length: 538)
Name: NF20284_high_2
Description: NF20284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20284_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Complemental strand, 9137727 - 9137229
Alignment:
| Q |
17 |
aatatgtgatctcagaaccattctcagatttgctttgttaatttatttctacttgttagtgtttttgatgctatttactttttctactgaagtcatatct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| | |
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| T |
9137727 |
aatatgtgatctcagaaccattctcagatttgctttgttaatttacttctacttgttagtgtttttgatgctattt--tttacttactgaagtcatatat |
9137630 |
T |
|
| Q |
117 |
ctgttatctctataactaattatgactaatagaaaattgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgtaa |
216 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9137629 |
ctctcatctctataactaattatgactaatagaaaattgtaactaatatcattgagaaaatttacacctacttcgttcttttaattcttttcttttgtaa |
9137530 |
T |
|
| Q |
217 |
atttataatttgcaatctcaatttacattgtgagtgcatggcatcgtgatgggtcaatcgtaaactatatagtatgtgtgtgagtatattttggttgaaa |
316 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9137529 |
atttataatttaaattctcaatttacattgtgagtgcatggcatcgtgatggctcaatcgtaaactatatagtatgtgtgtgagtatatttttgttgaaa |
9137430 |
T |
|
| Q |
317 |
ctcgaaagaaataggaatatagattctcttatttggcttgttaaagaaatttcttctcgatcaacaaccaaaggatattcttgtaaaattttctccaagt |
416 |
Q |
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| T |
9137429 |
ctcgaaagaaataggaatatagattctctcatttggcttgttaaagaagtttcttctcgatcaacaaccaaaggatattcttgtaaaattttctccaagt |
9137330 |
T |
|
| Q |
417 |
tttgtcttgaccagaaagccaaaacgatgtaggcaatggtctcgcaggtcattggatgaacgccgccatcagcccaccatatctaactccgcatctgatg |
516 |
Q |
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| T |
9137329 |
tttgtcttgaccagaaagccataacgatgtgggcaatggtctcgcaggtcattggatgaacaccgccatcagcccaccatatctaactccgcatctgatg |
9137230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 8040412 - 8040306
Alignment:
| Q |
122 |
atctctataactaattatgactaatagaaaa-ttgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgta--aat |
218 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||| |
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| T |
8040412 |
atctctctaactaattatgactaatagaaaaattgtaacatatatctgtgtgaaaatttacacctacttctttcttttaattctttacttttgtagtaat |
8040313 |
T |
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| Q |
219 |
ttataat |
225 |
Q |
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||||||| |
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| T |
8040312 |
ttataat |
8040306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 268
Target Start/End: Complemental strand, 31326473 - 31326331
Alignment:
| Q |
123 |
tctctataactaattatgactaatag-aaaattgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgtaaattta |
221 |
Q |
| |
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|||| ||||||||| ||||||||||| ||||||||| | |||||||| || ||||||||||||||||| ||||||| | | |||||||| ||| || | |
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| T |
31326473 |
tctcaataactaatcatgactaatagaaaaattgta--aaatatctgtgag-aaatttacacctacttctttcttttta-tattttctttcataacttca |
31326378 |
T |
|
| Q |
222 |
taatttgcaatctcaatttacattgtgagtgcatggcatcgtgatgg |
268 |
Q |
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|||||| ||| || |||||||||| || |||||||||| |||||| |
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| T |
31326377 |
taatttataatgtcgatttacattgcaagggcatggcatcttgatgg |
31326331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 506
Target Start/End: Complemental strand, 31402756 - 31402647
Alignment:
| Q |
396 |
cttgtaaaattttctccaagttttgtcttgaccagaaagccaaaacgatgtaggcaatggtctcgcaggtcattggatgaacgccgccatcagcccacca |
495 |
Q |
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|||||||||||||||||| |||||||||||||| |||||| |||||| || | ||| ||| || ||||||||||| || || ||||||||||| || |
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| T |
31402756 |
cttgtaaaattttctccagattttgtcttgaccaaaaagccgcgacgatggagctagtggcctcacatgtcattggatgtactccaccatcagcccaaca |
31402657 |
T |
|
| Q |
496 |
tatctaactcc |
506 |
Q |
| |
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|||||||||| |
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|
| T |
31402656 |
-atctaactcc |
31402647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 268
Target Start/End: Complemental strand, 31373922 - 31373780
Alignment:
| Q |
123 |
tctctataactaattatgactaatagaaaa-ttgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgtaaattta |
221 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |||||| |||| |||| ||||| |||||||||||||| ||||||| | | |||||||| ||| || | |
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| T |
31373922 |
tctcaataactaaacatgactaatagaaaaattgtaaaatat--ctgtgagaaa-tttacacctacttctttcttttta-tattttctttcataacttca |
31373827 |
T |
|
| Q |
222 |
taatttgcaatctcaatttacattgtgagtgcatggcatcgtgatgg |
268 |
Q |
| |
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|||||| ||| || |||||||||| || |||||||||| |||||| |
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| T |
31373826 |
taatttataatgtcgatttacattgcaagggcatggcatcttgatgg |
31373780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 487
Target Start/End: Complemental strand, 31459205 - 31459124
Alignment:
| Q |
406 |
tttctccaagttttgtcttgaccagaaagccaaaacgatgtaggcaatggtctcgcaggtcattggatgaacgccgccatca |
487 |
Q |
| |
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|||||| | ||||||||||||||| ||||||| | |||||| ||||||| ||||| || ||||||||||| || |||||| |
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|
| T |
31459205 |
tttctctaggttttgtcttgaccaaaaagccatagtgatgtaatcaatggtatcgcaagtaattggatgaaccccaccatca |
31459124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 486
Target Start/End: Complemental strand, 31386699 - 31386655
Alignment:
| Q |
442 |
gatgtaggcaatggtctcgcaggtcattggatgaacgccgccatc |
486 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||| || ||||| |
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| T |
31386699 |
gatgtagtcaatggtctcgcaagtcattggatgaaccccaccatc |
31386655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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