View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20284_high_6 (Length: 337)
Name: NF20284_high_6
Description: NF20284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20284_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 39395629 - 39395956
Alignment:
| Q |
10 |
agcagcacagaggggggaataatgaagaggttgttaataaagaaattattgtagaagatgatacactaaagggttcaatatttgatgaagtggaggacga |
109 |
Q |
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| T |
39395629 |
agcaacacaaaggggggaataatgaagaggttgttaataaagaaattattgtagaagatgatacactaaagggttcaatatttgatgaagtggaggacga |
39395728 |
T |
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| Q |
110 |
ttcacctgattcagaaacacatgttgaaatgggaattcatgatgactttgatcatttagatgaatcacattttgatgattctgaggctgatagaaacaac |
209 |
Q |
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| T |
39395729 |
ttcacctgattcagaaacacatgttgaaatgggaattcatgaagattttgatcatttagatgaatcacattttgatgattctgaggctgatagaaacaac |
39395828 |
T |
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| Q |
210 |
agaaaaagtaaagcattgctgagaagatttggtgatcttataaggagaaaaagnnnnnnnnnnnnnnnnnataataatacccgaaaagaacttcccaatg |
309 |
Q |
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| T |
39395829 |
agaaaaagtaaagcattgctgagaagatttggtgatcttataaggagaaaaagtactactactgctactaataataatacccgaaaagaacttcccaatg |
39395928 |
T |
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| Q |
310 |
aagaacatctacaaacgtaatgcaaatt |
337 |
Q |
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| T |
39395929 |
aagaacatctacaaacgtaatgcaaatt |
39395956 |
T |
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