View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20284_low_10 (Length: 244)

Name: NF20284_low_10
Description: NF20284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20284_low_10
NF20284_low_10
[»] chr4 (5 HSPs)
chr4 (1-234)||(38081435-38081668)
chr4 (5-223)||(38072354-38072572)
chr4 (1-223)||(38058022-38058244)
chr4 (1-223)||(38062210-38062432)
chr4 (1-223)||(38085860-38086082)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 38081435 - 38081668
Alignment:
Q  1 actcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaatttacaactcaaaatctcagatttgcatcctacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38081435 actcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaatttacaactcaaaatctaagatttgcatcctacaa 38081534  T
Q  101 aacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttcccaaaatcatggcctccagattcgaacccgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38081535 aacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttcccaaaatcatggcctccagattcgaacccgt 38081634  T
Q  201 agtgggggccatgactttgagggcctatcctatg 234  Q
    ||||||||||||||||||||||||||||||||||    
T  38081635 agtgggggccatgactttgagggcctatcctatg 38081668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 38072354 - 38072572
Alignment:
Q  5 aacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaatttacaactcaaaatctcagatttgcatcctacaaaaca 104  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||| ||| |||||| |||||||||||| || |  |||||    
T  38072354 aacttcaatctctaaagttgtgtacacaaaaaccaattcctcttactcatcaatactcaaattttcaattcaaaacctcagatttgcaaccaatgaaaca 38072453  T
Q  105 ccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttcccaaaatcatggcctccagattcgaacccgtagtg 204  Q
    |||||||| |||||||| |||||||||  | ||  |||||||||||||||||||||||| ||||||||| | |||||| | || |||||||  |||||||    
T  38072454 ccaaaaccccttgtcattatcacacctacacaaatttcccatattcaaacagccataatctgttcccaacaccatggcatgcaaattcgaattcgtagtg 38072553  T
Q  205 ggggccatgactttgaggg 223  Q
    | ||||| ||||| |||||    
T  38072554 gtggccacgacttcgaggg 38072572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38058022 - 38058244
Alignment:
Q  1 actcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaatttacaactcaaaatctcagatttgcatcctacaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||||| |||     
T  38058022 actcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgcatccaacac 38058121  T
Q  101 aacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttcccaaaatcatggcctccagattcgaacccgt 200  Q
    |||||| ||||| ||| |||| |||||||||  | |   |||||| ||||||||| ||||||| ||||| ||||  ||   ||| |||||||||| |||     
T  38058122 aacacctaaacctcttttcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagattcgaatccga 38058221  T
Q  201 agtgggggccatgactttgaggg 223  Q
    || || |||||||| ||||||||    
T  38058222 agcggtggccatgattttgaggg 38058244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38062432 - 38062210
Alignment:
Q  1 actcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaatttacaactcaaaatctcagatttgcatcctacaa 100  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||| |||||||||||||||||||||||| | |     
T  38062432 actcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccactcaaaatctcagatttgcatccaaaac 38062333  T
Q  101 aacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttcccaaaatcatggcctccagattcgaacccgt 200  Q
    |||||| ||||| |||||||| |||||||||  | |   |||||| ||||||||| ||||||| ||||||||||  |||| ||| |||||||||| |||     
T  38062332 aacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaagacatgacctgcagattcgaatccga 38062233  T
Q  201 agtgggggccatgactttgaggg 223  Q
    || || ||||| ||||| |||||    
T  38062232 agcggcggccacgacttcgaggg 38062210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38085860 - 38086082
Alignment:
Q  1 actcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaatttacaactcaaaatctcagatttgcatcctacaa 100  Q
    |||| |||||||||||||||||||||||||||||| ||||| | || ||| || || ||||| ||||| ||||||||||||||||||||||| || ||||    
T  38085860 actccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactccaattttcaactcaaaatctcagatttgcaaccaacaa 38085959  T
Q  101 aacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttcccaaaatcatggcctccagattcgaacccgt 200  Q
    |||||||||||||||||| ||  ||||||||||||||  ||||||||||||| || || |||||||||||||| | ||  |||| ||||||||||  ||     
T  38085960 aacaccaaaaccacttgtaattgtcacacctctagaaatttcccatattcaagcaaccgtaatttgttcccaataccacagcctgcagattcgaattcgc 38086059  T
Q  201 agtgggggccatgactttgaggg 223  Q
    || || || || |||||||||||    
T  38086060 agcggcggtcacgactttgaggg 38086082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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