View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20284_low_12 (Length: 228)

Name: NF20284_low_12
Description: NF20284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20284_low_12
NF20284_low_12
[»] chr7 (7 HSPs)
chr7 (14-82)||(28463362-28463430)
chr7 (108-152)||(22719926-22719970)
chr7 (108-152)||(9939433-9939477)
chr7 (108-152)||(10027632-10027676)
chr7 (108-152)||(29241537-29241581)
chr7 (108-152)||(36698751-36698795)
chr7 (108-152)||(47359511-47359555)
[»] chr5 (3 HSPs)
chr5 (117-156)||(1411341-1411380)
chr5 (117-152)||(19011190-19011225)
chr5 (117-156)||(15523696-15523735)
[»] chr2 (2 HSPs)
chr2 (107-152)||(26646366-26646411)
chr2 (108-152)||(12758558-12758602)
[»] chr4 (6 HSPs)
chr4 (108-152)||(24539689-24539733)
chr4 (108-150)||(55809888-55809930)
chr4 (108-152)||(25887292-25887336)
chr4 (108-152)||(29690941-29690985)
chr4 (108-152)||(48694724-48694768)
chr4 (108-151)||(54782636-54782679)
[»] scaffold0369 (1 HSPs)
scaffold0369 (108-152)||(14387-14431)
[»] chr8 (3 HSPs)
chr8 (108-152)||(15270133-15270177)
chr8 (108-152)||(45193866-45193910)
chr8 (117-152)||(13011915-13011950)
[»] chr3 (3 HSPs)
chr3 (108-152)||(35656488-35656532)
chr3 (108-152)||(32741112-32741156)
chr3 (108-152)||(33426364-33426408)
[»] chr1 (2 HSPs)
chr1 (108-150)||(21356255-21356297)
chr1 (108-152)||(496978-497022)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 28463362 - 28463430
Alignment:
Q  14 tcaaagggcacgagatatacattcataatataagttttcttaagtctaacatgtcatgcatttaagata 82  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28463362 tcaaagagcacgagatatgcattcataatataagttttcttaagtctaagatgtcatgcatttaagata 28463430  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 22719926 - 22719970
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||    
T  22719926 gggaggtgcaaacagctctatagagctgggcctccccaattttgg 22719970  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 9939477 - 9939433
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  9939477 gggaggtgcaaacagctctacagagctgggcctccccaattttgg 9939433  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 10027632 - 10027676
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  10027632 gggaggtgcaaacagctctacagagctgggcctccccaattttgg 10027676  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 29241581 - 29241537
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  29241581 gggaggtgcaaacagctctacagagctgggcctccccaattttgg 29241537  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 36698795 - 36698751
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  36698795 gggaggtgcaaacagctctacagagctgggcctccccaattttgg 36698751  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 47359555 - 47359511
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||| ||||||||||||||||||| ||||||||||    
T  47359555 gggaggtgcaaacaactctatagagctgggcctctccaattttgg 47359511  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 1411341 - 1411380
Alignment:
Q  117 aaacagctctatagagctgggcctccccaattttggagcc 156  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1411341 aaacagctctatagagctgggcctccccaattttggagcc 1411380  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 19011190 - 19011225
Alignment:
Q  117 aaacagctctatagagctgggcctccccaattttgg 152  Q
    ||||||||||||||||||||||||||||||||||||    
T  19011190 aaacagctctatagagctgggcctccccaattttgg 19011225  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 15523696 - 15523735
Alignment:
Q  117 aaacagctctatagagctgggcctccccaattttggagcc 156  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  15523696 aaacagctctactgagctgggcctccccaattttggagcc 15523735  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 26646366 - 26646411
Alignment:
Q  107 tgggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||    
T  26646366 tgggaggtgcaaacagctctatagagctgggcctccccaattttgg 26646411  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 12758558 - 12758602
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||    
T  12758558 gggaggtgcaaacagctctatagagctgggcctccccaattttgg 12758602  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 24539689 - 24539733
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||    
T  24539689 gggaggtgcaaacagctctatagagctgggcctccccaattttgg 24539733  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 55809888 - 55809930
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaatttt 150  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  55809888 gggaggtgcaaacagctctatagagctgggcctccccaatttt 55809930  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 25887336 - 25887292
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  25887336 gggaggtgcaaacagctctacagagctgggcctccccaattttgg 25887292  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 29690985 - 29690941
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  29690985 gggaggtgcaaacagctctacagagctgggcctccccaattttgg 29690941  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 48694724 - 48694768
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  48694724 gggaggtgcaaacagctctacagagctgggcctccccaattttgg 48694768  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 54782636 - 54782679
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttg 151  Q
    |||| ||| ||||||||||||||||||||||||||| |||||||    
T  54782636 gggatgtgcaaacagctctatagagctgggcctccctaattttg 54782679  T

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Target: scaffold0369 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 14387 - 14431
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  14387 gggaggtgcaaacagctctacagagctgggcctccccaattttgg 14431  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 15270177 - 15270133
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  15270177 gggaggtgcaaacagctctacagagctgggcctccccaattttgg 15270133  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 45193910 - 45193866
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  45193910 gggaggtgcaaacagctctacagagctgggcctccccaattttgg 45193866  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 13011950 - 13011915
Alignment:
Q  117 aaacagctctatagagctgggcctccccaattttgg 152  Q
    |||||||||||||||||||||||||| |||||||||    
T  13011950 aaacagctctatagagctgggcctccacaattttgg 13011915  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 35656532 - 35656488
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||    
T  35656532 gggaggtgcaaacagctctatagagctggacctccccaattttgg 35656488  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 32741112 - 32741156
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| |||||||||||  |||||||||||||||||||||||    
T  32741112 gggaggtgcaaacagctctaccgagctgggcctccccaattttgg 32741156  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 33426364 - 33426408
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||||||| || |||||||||||||||||||||||    
T  33426364 gggaggtgcaaacagctcaatggagctgggcctccccaattttgg 33426408  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 21356297 - 21356255
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaatttt 150  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||    
T  21356297 gggaggtgcaaacagctctatagagccgggcctccccaatttt 21356255  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 497022 - 496978
Alignment:
Q  108 gggaagtgtaaacagctctatagagctgggcctccccaattttgg 152  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||    
T  497022 gggaggtgcaaacaactctatagagttgggcctccccaattttgg 496978  T

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