View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20284_low_5 (Length: 428)

Name: NF20284_low_5
Description: NF20284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20284_low_5
NF20284_low_5
[»] chr7 (39 HSPs)
chr7 (73-414)||(30079509-30079855)
chr7 (302-414)||(30097496-30097614)
chr7 (73-278)||(40848811-40849018)
chr7 (133-278)||(8568531-8568676)
chr7 (73-278)||(8118206-8118402)
chr7 (135-273)||(48642745-48642883)
chr7 (93-277)||(32942013-32942200)
chr7 (81-218)||(37375344-37375477)
chr7 (91-217)||(4153661-4153788)
chr7 (90-256)||(46147198-46147361)
chr7 (139-278)||(23032634-23032773)
chr7 (160-278)||(26215129-26215246)
chr7 (75-275)||(31287692-31287898)
chr7 (133-188)||(11399169-11399224)
chr7 (73-172)||(29628164-29628264)
chr7 (73-167)||(26524861-26524957)
chr7 (175-218)||(20334604-20334647)
chr7 (135-266)||(23729360-23729486)
chr7 (73-116)||(26215027-26215070)
chr7 (186-273)||(27456325-27456412)
chr7 (92-218)||(29211584-29211711)
chr7 (133-219)||(47646697-47646783)
chr7 (73-114)||(27100938-27100979)
chr7 (73-114)||(27177324-27177365)
chr7 (73-125)||(6880021-6880073)
chr7 (135-219)||(7697303-7697387)
chr7 (74-114)||(34751108-34751148)
chr7 (81-125)||(43202541-43202585)
chr7 (81-116)||(23707051-23707086)
chr7 (73-120)||(27215115-27215162)
chr7 (161-218)||(2308120-2308177)
chr7 (73-114)||(20334700-20334741)
chr7 (81-118)||(21237708-21237745)
chr7 (201-278)||(27054777-27054854)
chr7 (74-115)||(49012185-49012226)
chr7 (80-120)||(2308033-2308073)
chr7 (73-113)||(11834389-11834429)
chr7 (89-125)||(33434226-33434262)
chr7 (201-301)||(47903185-47903285)
[»] chr3 (28 HSPs)
chr3 (73-278)||(8557874-8558080)
chr3 (73-285)||(2832310-2832528)
chr3 (79-278)||(42363148-42363347)
chr3 (73-278)||(55467564-55467764)
chr3 (133-277)||(10481622-10481766)
chr3 (133-277)||(20846431-20846576)
chr3 (172-278)||(38652005-38652110)
chr3 (73-276)||(26758186-26758386)
chr3 (80-238)||(50578930-50579084)
chr3 (160-266)||(54121993-54122099)
chr3 (133-278)||(17144707-17144851)
chr3 (133-214)||(26291933-26292014)
chr3 (73-223)||(4554701-4554852)
chr3 (135-218)||(22473070-22473153)
chr3 (73-218)||(37045330-37045471)
chr3 (82-235)||(5640658-5640812)
chr3 (147-285)||(44650917-44651055)
chr3 (73-285)||(45629146-45629351)
chr3 (82-167)||(5681430-5681516)
chr3 (73-125)||(25465911-25465963)
chr3 (81-169)||(52632098-52632187)
chr3 (82-120)||(5671933-5671971)
chr3 (201-278)||(43030377-43030454)
chr3 (81-125)||(30739555-30739599)
chr3 (80-114)||(44651080-44651114)
chr3 (73-118)||(25919177-25919222)
chr3 (73-114)||(48167385-48167426)
chr3 (265-301)||(33360953-33360989)
[»] chr5 (25 HSPs)
chr5 (92-278)||(27571980-27572167)
chr5 (81-258)||(14652433-14652607)
chr5 (73-218)||(41454884-41455031)
chr5 (73-278)||(11402552-11402756)
chr5 (135-255)||(22747552-22747672)
chr5 (73-125)||(18845623-18845675)
chr5 (73-278)||(6594933-6595144)
chr5 (139-278)||(35240802-35240946)
chr5 (133-278)||(20191961-20192101)
chr5 (134-232)||(40692501-40692598)
chr5 (73-114)||(691478-691519)
chr5 (73-114)||(40884440-40884481)
chr5 (73-125)||(2589082-2589134)
chr5 (133-169)||(12379015-12379051)
chr5 (139-217)||(6633341-6633414)
chr5 (75-121)||(19402297-19402343)
chr5 (80-125)||(6367768-6367813)
chr5 (73-114)||(25495207-25495248)
chr5 (201-278)||(30265836-30265913)
chr5 (74-125)||(563828-563877)
chr5 (89-125)||(733964-734000)
chr5 (201-257)||(12166209-12166265)
chr5 (269-305)||(15068399-15068435)
chr5 (139-214)||(17132068-17132148)
chr5 (73-113)||(34969451-34969491)
[»] chr1 (38 HSPs)
chr1 (78-301)||(11074321-11074538)
chr1 (140-267)||(8165535-8165662)
chr1 (80-275)||(32910296-32910488)
chr1 (80-278)||(17651712-17651911)
chr1 (135-276)||(36203422-36203563)
chr1 (73-278)||(12973520-12973726)
chr1 (74-217)||(23475029-23475173)
chr1 (133-215)||(26345035-26345117)
chr1 (134-278)||(17989008-17989152)
chr1 (73-211)||(35992521-35992661)
chr1 (185-278)||(27507520-27507613)
chr1 (133-277)||(21685519-21685663)
chr1 (73-174)||(8268700-8268803)
chr1 (74-125)||(35980199-35980250)
chr1 (94-172)||(9330443-9330522)
chr1 (175-285)||(52828776-52828885)
chr1 (75-173)||(15880073-15880171)
chr1 (133-276)||(25559977-25560116)
chr1 (76-116)||(50471346-50471386)
chr1 (185-278)||(35980416-35980509)
chr1 (73-125)||(10847452-10847504)
chr1 (133-276)||(16537824-16537957)
chr1 (73-113)||(32938004-32938044)
chr1 (186-277)||(2490058-2490149)
chr1 (73-112)||(6694293-6694332)
chr1 (139-278)||(9962135-9962269)
chr1 (73-169)||(34914193-34914289)
chr1 (144-218)||(39158311-39158385)
chr1 (269-302)||(8211220-8211253)
chr1 (73-118)||(15882074-15882119)
chr1 (133-178)||(24911036-24911081)
chr1 (201-278)||(32953999-32954075)
chr1 (189-266)||(44055685-44055762)
chr1 (164-277)||(50310567-50310680)
chr1 (73-117)||(382180-382224)
chr1 (170-278)||(3935417-3935525)
chr1 (269-301)||(5155451-5155483)
chr1 (150-210)||(50153437-50153497)
[»] chr4 (36 HSPs)
chr4 (73-278)||(32223236-32223441)
chr4 (73-267)||(15723853-15724049)
chr4 (81-277)||(48293339-48293526)
chr4 (73-266)||(23120172-23120367)
chr4 (73-277)||(18536559-18536765)
chr4 (133-278)||(11031617-11031757)
chr4 (133-278)||(20986382-20986527)
chr4 (133-278)||(36106401-36106542)
chr4 (73-277)||(48338303-48338503)
chr4 (80-278)||(5122310-5122506)
chr4 (133-286)||(40806800-40806948)
chr4 (133-257)||(23625878-23626002)
chr4 (73-120)||(8312003-8312050)
chr4 (73-120)||(48684894-48684941)
chr4 (141-209)||(8484695-8484763)
chr4 (73-169)||(48602445-48602542)
chr4 (80-169)||(18319493-18319584)
chr4 (80-169)||(18399097-18399188)
chr4 (73-115)||(21069171-21069213)
chr4 (133-218)||(21069066-21069151)
chr4 (73-114)||(29700844-29700885)
chr4 (172-277)||(45983345-45983450)
chr4 (73-125)||(6101993-6102045)
chr4 (73-125)||(26674224-26674276)
chr4 (74-114)||(29232865-29232905)
chr4 (73-125)||(49640951-49641003)
chr4 (73-125)||(51907177-51907229)
chr4 (74-120)||(17794268-17794315)
chr4 (135-218)||(18396349-18396427)
chr4 (74-120)||(9058271-9058317)
chr4 (228-278)||(17844852-17844902)
chr4 (73-119)||(35233210-35233256)
chr4 (73-114)||(45983500-45983541)
chr4 (77-125)||(11031556-11031604)
chr4 (73-117)||(14866905-14866949)
chr4 (73-113)||(28147901-28147941)
[»] chr2 (19 HSPs)
chr2 (133-278)||(5862608-5862753)
chr2 (79-278)||(44085449-44085639)
chr2 (73-277)||(27301405-27301605)
chr2 (92-285)||(17762695-17762885)
chr2 (92-241)||(13193896-13194041)
chr2 (175-286)||(12041608-12041719)
chr2 (77-278)||(28790466-28790664)
chr2 (134-276)||(30759626-30759768)
chr2 (73-125)||(6946471-6946523)
chr2 (139-253)||(21480795-21480909)
chr2 (82-256)||(1330992-1331158)
chr2 (74-114)||(11678114-11678154)
chr2 (74-114)||(11695592-11695632)
chr2 (73-120)||(31719999-31720046)
chr2 (73-125)||(36964133-36964186)
chr2 (73-116)||(22014085-22014128)
chr2 (201-278)||(44979814-44979891)
chr2 (73-117)||(32646373-32646417)
chr2 (229-277)||(43452116-43452164)
[»] chr6 (23 HSPs)
chr6 (133-277)||(22413799-22413943)
chr6 (73-218)||(19135028-19135174)
chr6 (73-256)||(30752513-30752698)
chr6 (73-120)||(8064605-8064652)
chr6 (133-260)||(28632913-28633040)
chr6 (133-276)||(32190647-32190790)
chr6 (73-210)||(14564456-14564595)
chr6 (73-278)||(20500525-20500718)
chr6 (73-257)||(892256-892442)
chr6 (133-218)||(7170074-7170159)
chr6 (73-278)||(29048087-29048282)
chr6 (77-125)||(4562966-4563014)
chr6 (185-285)||(31945458-31945553)
chr6 (73-114)||(31945351-31945392)
chr6 (175-283)||(14940591-14940699)
chr6 (79-125)||(13532206-13532251)
chr6 (228-278)||(26645456-26645506)
chr6 (228-278)||(26751422-26751472)
chr6 (197-278)||(6266864-6266945)
chr6 (73-118)||(9686163-9686208)
chr6 (73-114)||(12108483-12108524)
chr6 (133-169)||(24644940-24644976)
chr6 (269-305)||(35040318-35040354)
[»] chr8 (23 HSPs)
chr8 (133-278)||(40436396-40436537)
chr8 (140-276)||(31497583-31497729)
chr8 (81-278)||(15272230-15272428)
chr8 (81-278)||(15452599-15452797)
chr8 (135-278)||(11218910-11219053)
chr8 (135-275)||(24682070-24682209)
chr8 (133-277)||(33565916-33566062)
chr8 (73-218)||(6591248-6591394)
chr8 (73-169)||(9012760-9012855)
chr8 (73-276)||(4785198-4785398)
chr8 (202-268)||(8036013-8036079)
chr8 (133-278)||(44336732-44336877)
chr8 (73-218)||(6616943-6617089)
chr8 (172-279)||(7428449-7428556)
chr8 (82-125)||(28073125-28073168)
chr8 (73-125)||(12074109-12074161)
chr8 (201-278)||(10661114-10661191)
chr8 (201-278)||(33068226-33068303)
chr8 (73-114)||(38926351-38926392)
chr8 (73-117)||(3129485-3129529)
chr8 (83-119)||(14185804-14185840)
chr8 (136-216)||(19539400-19539475)
chr8 (139-214)||(36340738-36340818)
[»] scaffold0204 (2 HSPs)
scaffold0204 (73-277)||(25825-26025)
scaffold0204 (74-278)||(14483-14682)
[»] scaffold0470 (1 HSPs)
scaffold0470 (73-218)||(6261-6407)
[»] scaffold0664 (1 HSPs)
scaffold0664 (73-193)||(6041-6163)
[»] scaffold0688 (2 HSPs)
scaffold0688 (228-279)||(1118-1169)
scaffold0688 (228-279)||(7687-7738)
[»] scaffold0015 (1 HSPs)
scaffold0015 (139-251)||(62387-62504)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 73 - 414
Target Start/End: Original strand, 30079509 - 30079855
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgatt 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||    
T  30079509 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctaaaaaaaccgcaccaaccgatccaacccaaaccgcattggtttgatt 30079608  T
Q  173 tagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaac 272  Q
    |||||||||| |||||||||| |||||||||| | |||||||||     || |||||||||||||||||||||||||||||||||||||||||| |||||    
T  30079609 tagtttcgtttagattttatttttaaagtcaatcaaaccaaacc-----gcatgcttttttatcttacgattcggatgacttttaccttcaaaatcaaac 30079703  T
Q  273 caaaccaaaccgcaccgggaacacccctag----------gtccaaatccatgacagcttgagtaggacatgtacatgtatagatttcacgaaataagca 362  Q
    ||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30079704 caaaccaaaccgcaccgggaacacccctagatcgttatgggtccaaatccatgacagcttgagtaggacatgtacatgtatagatttcacgaaataagca 30079803  T
Q  363 atattccttttttcttaactgttttttcagcaataaaatagtccttagaatt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30079804 atattccttttttcttaactgttttttcagcaataaaatagtccttagaatt 30079855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 302 - 414
Target Start/End: Complemental strand, 30097614 - 30097496
Alignment:
Q  302 ggtccaaatccatgacagcttgagtaggacatg-----tacatgtatagatttcacgaaataagcaatattccttttttc-ttaactgttttttcagcaa 395  Q
    ||||||||||||||||| ||||||||| ||||      |||||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  30097614 ggtccaaatccatgacaacttgagtagtacatacatgatacatgtatacatttcacgaaataagaaatattccttttttccttaactattttttcagcaa 30097515  T
Q  396 taaaatagtccttagaatt 414  Q
    |||||||||||||||||||    
T  30097514 taaaatagtccttagaatt 30097496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 278
Target Start/End: Complemental strand, 40849018 - 40848811
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa-ttgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttga 170  Q
    |||||| |||||||| | ||||||||||||| |||||||||| |||||| |||         |||||||||||||| |||||||||| ||||| |||||     
T  40849018 gttttatctttttaactcgattttaatgttgaaaacaaaaaaattgtattgtcccaaaaaaaccgcaccaaccgattcaacccaaaccgcattagtttgg 40848919  T
Q  171 tttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaa 270  Q
    |||  ||| |||| ||||||||| | ||||||||||||||||||||||   |  || ||||||| ||||| ||||| |||||||||||| |||||||| |    
T  40848918 ttttatttggttcggattttattttaaaagtcaaccgaaccaaaccaaaccgtatgtttttttaccttacaattcgaatgacttttaccctcaaaaccga 40848819  T
Q  271 accaaacc 278  Q
    ||||||||    
T  40848818 accaaacc 40848811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 278
Target Start/End: Original strand, 8568531 - 8568676
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    |||||||||||||||||| |||||| ||||| |||||||||  ||| |||| ||||||||| | ||||||||||||||| ||||||   || | ||| ||    
T  8568531 ccgcaccaaccgatccaatccaaaccgcattagtttgatttcatttagttcggattttattttaaaagtcaaccgaaccgaaccaaaccgcatacttatt 8568630  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    |||||| || ||||||||||||||| | |||||||| |||||||||    
T  8568631 tatcttgcggttcggatgacttttaacctcaaaaccgaaccaaacc 8568676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 73 - 278
Target Start/End: Original strand, 8118206 - 8118402
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    |||| |||||||||| ||||||||||||||| |||||||||||| ||||||||        |||||| ||||||||||||||||||  ||||||||||      
T  8118206 gtttcagctttttaacttgattttaatgttgaaaacaaaaaattatatcgtctcgaacaaaccgcactaaccgatccaacccaaacaacattggtttg-- 8118303  T
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaa 271  Q
            |||||||||||||| ||||| ||||||||||||||||||    | |||||||||||||| || ||||||| | ||||||| |||||||  ||    
T  8118304 --------gttcagattttatttttaaaatcaaccgaaccaaaccaaaccacatgcttttttatcttgcggttcggataaattttaccctcaaaacagaa 8118395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 135 - 273
Target Start/End: Complemental strand, 48642883 - 48642745
Alignment:
Q  135 gcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgctttttta 234  Q
    ||||||| ||||||||||||||| ||||||||||| ||| |||| ||||| |||| ||| ||||||||||||||||||||||||   || || ||||| |    
T  48642883 gcaccaatcgatccaacccaaaccgcattggtttggtttggtttggttcaaatttaatttttaaagtcaaccgaaccaaaccaaaccgcatgttttttaa 48642784  T
Q  235 tcttacgattcggatgacttttaccttcaaaaccaaacc 273  Q
    |||| || ||| ||||| ||||||| |||||||| ||||    
T  48642783 tcttgcggttcagatgaattttaccctcaaaaccgaacc 48642745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 277
Target Start/End: Original strand, 32942013 - 32942200
Alignment:
Q  93 ttttaatgttggaaacaaaaaattgtatcgtctnnnnnnn---ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattt 189  Q
    |||||||||||||||||||||||||||| ||||          ||||||||| ||||||||| |||||  |||||||||| ||| |||| |||| ||||     
T  32942013 ttttaatgttggaaacaaaaaattgtattgtctcgaaaaaaaaccgcaccaatcgatccaactcaaaccacattggtttggtttggtttggttcggattg 32942112  T
Q  190 tattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaac 277  Q
    |||| | ||||||||||||| ||||||||   || || ||||||||||| |  ||||||||||||||| | |||||||| ||||||||    
T  32942113 tattttaaaagtcaaccgaatcaaaccaaaccgcatgtttttttatcttgcagttcggatgacttttaacctcaaaaccgaaccaaac 32942200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 37375477 - 37375344
Alignment:
Q  81 tttttaagttgattttaatgttggaaacaaaaaattgtatcgtct-nnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgatttagtttc 179  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |        |||||||||||||| |||||||||| |||||||     ||||||||     
T  37375477 tttttaacttgattttaatgttggaaacaaaaaattgtatcgtatcgaaaaaaccgcaccaaccgattcaacccaaaccgcattgg-----tttagtttg 37375383  T
Q  180 gttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    |||| |||| |||| |||||||||||| |||||||||||    
T  37375382 gttcggattctatttttaaagtcaaccaaaccaaaccaa 37375344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 217
Target Start/End: Original strand, 4153661 - 4153788
Alignment:
Q  91 gattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattt 189  Q
    |||||||||||||||||||||||||||| ||||||        |||||||||  ||| ||| ||||||   |||| ||||||||||||| ||||| ||||    
T  4153661 gattttaatgttggaaacaaaaaattgtgtcgtctccaaaaaaccgcaccaattgatacaatccaaaccatattgatttgatttagtttggttcaaattt 4153760  T
Q  190 tattcttaaagtcaaccgaaccaaacca 217  Q
    |||  |||||||||||||||||||||||    
T  4153761 tatatttaaagtcaaccgaaccaaacca 4153788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 256
Target Start/End: Complemental strand, 46147361 - 46147198
Alignment:
Q  90 tgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnc--cgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagat 187  Q
    ||||||||||| ||||||||||||||||||| ||||          ||||||||||||||||||  |||| |||||||||||     |||| ||||||||    
T  46147361 tgattttaatgatggaaacaaaaaattgtattgtctcgaaaaaaatcgcaccaaccgatccaacgtaaaccgcattggtttg-----gtttggttcagat 46147267  T
Q  188 tttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgactttt 256  Q
    |||||| | |||||||||| |||||||||||   || |||||||||| |||||| ||  ||||||||||    
T  46147266 tttattttaaaagtcaaccaaaccaaaccaatccgcatgcttttttaccttacggtttagatgactttt 46147198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 139 - 278
Target Start/End: Complemental strand, 23032773 - 23032634
Alignment:
Q  139 caaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatctt 238  Q
    |||||||||||| ||||||  |||||||||| ||| |||| ||||| |||||||| | ||||||||||||||||||| ||    | | ||||||||||||    
T  23032773 caaccgatccaatccaaacctcattggtttggtttggtttggttcaaattttattttaaaagtcaaccgaaccaaactaaaccacatacttttttatctt 23032674  T
Q  239 acgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
     || ||| ||||||||||| | |||| ||  |||||||||    
T  23032673 tcggttcagatgacttttagcctcaacactgaaccaaacc 23032634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 278
Target Start/End: Original strand, 26215129 - 26215246
Alignment:
Q  160 cattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttacc 259  Q
    ||||||||||| || | || |||| ||||||||| | ||||||||||||||||||| |||  |  |||||| ||||||| || || |||||||||||| |    
T  26215129 cattggtttgagttggcttggttc-gattttattttaaaagtcaaccgaaccaaacaaacccgtatgctttattatcttgcggtttggatgacttttaac 26215227  T
Q  260 ttcaaaaccaaaccaaacc 278  Q
     ||||||||||||||||||    
T  26215228 ctcaaaaccaaaccaaacc 26215246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 275
Target Start/End: Original strand, 31287692 - 31287898
Alignment:
Q  75 tttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct-nnnnnnnccgcaccaaccgatccaacccaaactgcattggtt-----t 168  Q
    |||| |||||||| ||||||||||||||||||||||||||   ||| ||||        |||||||||| ||||||| |||||| |||||||||     |    
T  31287692 tttaactttttaatttgattttaatgttggaaacaaaaaaaattattgtctaaaaacaaccgcaccaacggatccaatccaaaccgcattggtttagtat 31287791  T
Q  169 gatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaacc 268  Q
    | ||| | || |||| ||| ||||| | ||||||||||||||||||||||   || | ||| ||||||||||| ||| ||||||| ||| | |||||| |    
T  31287792 gttttggattggttcggatcttattttaaaagtcaaccgaaccaaaccaaaccgcatacttatttatcttacggttcagatgactattagcctcaaaatc 31287891  T
Q  269 aaaccaa 275  Q
    |||||||    
T  31287892 aaaccaa 31287898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 11399224 - 11399169
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagatt 188  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||    
T  11399224 ccgcaccaaccgatccaacccaaaccgcatttgtttggtttagtttggttcagatt 11399169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 29628264 - 29628164
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct-nnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    |||||| |||||||| | | |||||||||||||||||||||||||||| ||||         ||||||||||||||||||||||||  ||||||||||||    
T  29628264 gttttacctttttaactcggttttaatgttggaaacaaaaaattgtattgtctcgaaaaaatcgcaccaaccgatccaacccaaaccacattggtttgat 29628165  T
Q  172 t 172  Q
    |    
T  29628164 t 29628164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 26524861 - 26524957
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct--nnnnnnnccgcaccaaccgatccaacccaaactgcattggtt 167  Q
    ||||||||||||||| || |||||||||||||||||| ||||||| || ||||         ||||||||||||||||||||| ||| |||||||||    
T  26524861 gttttagctttttaactttattttaatgttggaaacagaaaattgcattgtctggtgaaacaccgcaccaaccgatccaaccctaaccgcattggtt 26524957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 20334647 - 20334604
Alignment:
Q  175 gtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  20334647 gtttggttcagattttatttttaaagtcaaccgaaccaaaccaa 20334604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 266
Target Start/End: Complemental strand, 23729486 - 23729360
Alignment:
Q  135 gcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgctttttta 234  Q
    |||||||||||||||| |||||| | ||| |||||     |||| |||||||||||||| | ||||||||||||   |||||||   || ||||||||||    
T  23729486 gcaccaaccgatccaaaccaaaccgtattagtttg-----gtttggttcagattttattttaaaagtcaaccgagttaaaccaaaccgcatgctttttta 23729392  T
Q  235 tcttacgattcggatgacttttaccttcaaaa 266  Q
    |||| || ||||||||| ||||| | ||||||    
T  23729391 tcttgcggttcggatgatttttagcatcaaaa 23729360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 26215027 - 26215070
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaatt 116  Q
    |||||| |||||||| ||||||||||||||||||||||||||||    
T  26215027 gttttacctttttaatttgattttaatgttggaaacaaaaaatt 26215070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 27456412 - 27456325
Alignment:
Q  186 attttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaacc 273  Q
    |||||||| | ||||||||| |||| |||||||   || |||||||||||| |||| ||| ||||||||||| |||| ||||||||||    
T  27456412 attttattttaaaagtcaacagaactaaaccaaaccgcatgcttttttatcgtacggttcagatgacttttagcttcgaaaccaaacc 27456325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 29211584 - 29211711
Alignment:
Q  92 attttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagatttt 190  Q
    |||||||||||| |||||||||||||||| || |        ||||||||||||||||||| ||| ||||||||||||| ||| |||| |||| |||| |    
T  29211584 attttaatgttgcaaacaaaaaattgtattgtttcgaaaaaaccgcaccaaccgatccaactcaacctgcattggtttggtttggtttggttcggattgt 29211683  T
Q  191 attcttaaagtcaaccgaaccaaaccaa 218  Q
    |||   ||| || ||||||| |||||||    
T  29211684 atttcaaaaatcgaccgaacgaaaccaa 29211711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 47646697 - 47646783
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaac 219  Q
    ||||||||||||||||||| |||||  | ||| |||| ||| |||| ||||| | |||||| | ||| |||||||||||||||||||    
T  47646697 ccgcaccaaccgatccaacacaaaccacgttgatttggtttggtttggttcaaactttattttaaaaatcaaccgaaccaaaccaac 47646783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 27100938 - 27100979
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  27100938 gttttagatttttaatttgattttaatgttggaaacaaaaaa 27100979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 27177365 - 27177324
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  27177365 gttttagatttttaatttgattttaatgttggaaacaaaaaa 27177324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 6880021 - 6880073
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    |||||| |||||||| |||||||||| |||| |||||||||||||||| ||||    
T  6880021 gttttaactttttaacttgattttaaggttgaaaacaaaaaattgtattgtct 6880073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 7697387 - 7697303
Alignment:
Q  135 gcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaac 219  Q
    ||||||||||||| || |||||| ||||||||||| ||| ||||  | | ||||||||| | ||| ||||| |||||||||||||    
T  7697387 gcaccaaccgatcaaatccaaaccgcattggtttggtttggtttgatccggattttattttaaaattcaacagaaccaaaccaac 7697303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 34751148 - 34751108
Alignment:
Q  74 ttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  34751148 ttttagctttttaatttgattttaatgtgggaaacaaaaaa 34751108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 43202585 - 43202541
Alignment:
Q  81 tttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    ||||||| || ||||||||||||||||||||||||||||| ||||    
T  43202585 tttttaacttaattttaatgttggaaacaaaaaattgtattgtct 43202541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 116
Target Start/End: Original strand, 23707051 - 23707086
Alignment:
Q  81 tttttaagttgattttaatgttggaaacaaaaaatt 116  Q
    ||||||| ||||||||||||||||||||||||||||    
T  23707051 tttttaacttgattttaatgttggaaacaaaaaatt 23707086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 27215115 - 27215162
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtat 120  Q
    |||||| |||||||| |  |||||||||||||||||||||||||||||    
T  27215115 gttttaactttttaactcaattttaatgttggaaacaaaaaattgtat 27215162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 2308120 - 2308177
Alignment:
Q  161 attggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    ||||||||||||| || | ||||| |||||||| | ||| ||||||||||||||||||    
T  2308120 attggtttgatttggtgtggttcaaattttattttaaaaatcaaccgaaccaaaccaa 2308177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 20334741 - 20334700
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    |||||| ||||| || ||||||||||||||||||||||||||    
T  20334741 gttttaacttttcaatttgattttaatgttggaaacaaaaaa 20334700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 21237708 - 21237745
Alignment:
Q  81 tttttaagttgattttaatgttggaaacaaaaaattgt 118  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  21237708 tttttaacttgattttaatgttgaaaacaaaaaattgt 21237745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 27054777 - 27054854
Alignment:
Q  201 tcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||||||||||||||   || |||||||||||||  || || |||||||||||    ||||||||||||||||||    
T  27054777 tcaaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttttgctcaaaaccaaaccaaacc 27054854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 49012226 - 49012185
Alignment:
Q  74 ttttagctttttaagttgattttaatgttggaaacaaaaaat 115  Q
    |||||||||||||| |||||||||| |||||||| |||||||    
T  49012226 ttttagctttttaacttgattttaaagttggaaataaaaaat 49012185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 2308033 - 2308073
Alignment:
Q  80 ctttttaagttgattttaatgttggaaacaaaaaattgtat 120  Q
    |||||||| | ||||||||||||| ||||||||||||||||    
T  2308033 ctttttaattcgattttaatgttgcaaacaaaaaattgtat 2308073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 11834389 - 11834429
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaa 113  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  11834389 gttttagctttttaatttgattttaacgttgaaaacaaaaa 11834429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 33434262 - 33434226
Alignment:
Q  89 ttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  33434262 ttgattttaatgttggaaacaaataattgtattgtct 33434226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 301
Target Start/End: Complemental strand, 47903285 - 47903185
Alignment:
Q  201 tcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaaccaaaccgcaccgggaacacccct 300  Q
    ||||||||||||||||||   || |||||||||||||  || || |||||| |||||   | |||||| |||||||||  |||||||||  |||||||||    
T  47903285 tcaaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgatttttatgcttaaaaccgaaccaaaccgcaccgcaccgcaaacacccct 47903186  T
Q  301 a 301  Q
    |    
T  47903185 a 47903185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 73 - 278
Target Start/End: Original strand, 8557874 - 8558080
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||        |||||| ||||||||| |||||||| ||||||||||| |    
T  8557874 gtttaagctttttaacttgattttaatgttggaaacaaaaaattgtatcgtctaaaaaaaaccgcacaaaccgatccgacccaaaccgcattggtttggt 8557973  T
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaa 271  Q
    || |||| |||| ||||||||| |||||||||| | |||| ||||||   ||  ||||||||||||| |  ||||| ||||||||||| |||||||||||    
T  8557974 ttggtttggttcggattttatttttaaagtcaatcaaaccgaaccaaaccgcaagcttttttatcttgcagttcgggtgacttttaccctcaaaaccaaa 8558073  T
Q  272 ccaaacc 278  Q
    |||||||    
T  8558074 ccaaacc 8558080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 285
Target Start/End: Original strand, 2832310 - 2832528
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnncc-gcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    |||||| ||||| || | ||||||||||||| ||||| |||||||||| ||||       || ||||||||||||| ||||||||| |||||||||||||    
T  2832310 gttttaccttttaaactcgattttaatgttgaaaacataaaattgtattgtctcaaaaaacccgcaccaaccgatcaaacccaaaccgcattggtttgat 2832409  T
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaacc-----aaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaa 266  Q
    || ||||  ||| ||||||||| | |||||||||||||||     |||||||   || ||||||||||||||  | ||||||||||||||| | ||||||    
T  2832410 ttggtttgattcggattttattttaaaagtcaaccgaaccaaaccaaaccaaaccgcatgcttttttatcttgtggttcggatgacttttagcctcaaaa 2832509  T
Q  267 ccaaaccaaaccaaaccgc 285  Q
    ||||||||||||| |||||    
T  2832510 ccaaaccaaaccacaccgc 2832528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 278
Target Start/End: Original strand, 42363148 - 42363347
Alignment:
Q  79 gctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgatttagtt 177  Q
    ||||||||| || ||||||||||||||||||||||||| ||||||||        |||||| || |||||||| |||||| ||||||||| ||||| |||    
T  42363148 gctttttaacttaattttaatgttggaaacaaaaaattatatcgtctcgaaaaatccgcactaatcgatccaaaccaaaccgcattggtt-gatttggtt 42363246  T
Q  178 tcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaac 277  Q
    | |||| |||||| || ||||||||||||||||||||||||   || || ||||||||||| || |||  || ||||||||| |||||||| ||||||||    
T  42363247 tggttcggattttgtttttaaagtcaaccgaaccaaaccaaaccgcatgattttttatcttgcggttcaaattacttttaccctcaaaaccgaaccaaac 42363346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 278
Target Start/End: Original strand, 55467564 - 55467764
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgatt 172  Q
    |||||| |||||||| ||||||||||||||||||||||||||   ||| ||||       |||||||||| ||||||| |||||| ||||||||||||||    
T  55467564 gttttatctttttaatttgattttaatgttggaaacaaaaaaaaatattgtctaaaaaaaccgcaccaactgatccaatccaaaccgcattggtttgatt 55467663  T
Q  173 tagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaac 272  Q
    | |||     | ||||||||| | ||||||||||||||||||||||   || | ||| |||||||| |  ||||||||||||||| | |||||||| |||    
T  55467664 tggtt-----cggattttattttaaaagtcaaccgaaccaaaccaaaccgcatacttatttatcttgcagttcggatgacttttagcctcaaaaccgaac 55467758  T
Q  273 caaacc 278  Q
    ||||||    
T  55467759 caaacc 55467764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 277
Target Start/End: Original strand, 10481622 - 10481766
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    ||||| ||||||||||||| |||||  |||||||||||||| ||||  |||| |||||||| | ||||||||||||||||||||||  ||||||  ||||    
T  10481622 ccgcatcaaccgatccaactcaaaccacattggtttgatttggtttgattcaaattttattttaaaagtcaaccgaaccaaaccaaactgcgtgtctttt 10481721  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaac 277  Q
    ||||||  | |||  |||||||||| | |||||||| ||||||||    
T  10481722 tatcttgtggttccaatgacttttatcctcaaaaccgaaccaaac 10481766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 277
Target Start/End: Complemental strand, 20846576 - 20846431
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgc--gtgcttt 230  Q
    ||||||||||||||||||||||||| ||||||||||||||| | || |||  ||||||||| | ||||||||||||||||||||||   ||  ||  |||    
T  20846576 ccgcaccaaccgatccaacccaaaccgcattggtttgattt-ggttggtttggattttattttaaaagtcaaccgaaccaaaccaaagcgcatgtatttt 20846478  T
Q  231 tttatcttacgattcggatgacttttaccttcaaaaccaaaccaaac 277  Q
    |||||||| || ||||||||||||||||  || ||||| ||||||||    
T  20846477 tttatcttgcggttcggatgacttttactctcgaaaccgaaccaaac 20846431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 38652005 - 38652110
Alignment:
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaa 271  Q
    ||||||| |||  ||| ||||| ||||||||||||||||||||||||   || |  ||||||||||| ||||||||||||||||||||||||||||||||    
T  38652005 ttagtttggtttggatattatttttaaagtcaaccgaaccaaaccaaaccgcata-ttttttatcttgcgattcggatgacttttaccttcaaaaccaaa 38652103  T
Q  272 ccaaacc 278  Q
    |||||||    
T  38652104 ccaaacc 38652110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 276
Target Start/End: Complemental strand, 26758386 - 26758186
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgatt 172  Q
    ||||||||||||||| || ||||||||||||||||  |||||    || ||||       |||||||||||||| |||||||||| ||||||||||  ||    
T  26758386 gttttagctttttaatttaattttaatgttggaaatgaaaaaa---attgtctaaaaaaaccgcaccaaccgatacaacccaaaccgcattggtttagtt 26758290  T
Q  173 tagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaac 272  Q
    | |||| | ||||| |||||| | ||||||||||||||||||||||   |  | ||| |||||||| || ||||||||||||||| | | |||||| |||    
T  26758289 tggtttggatcagactttattttaaaagtcaaccgaaccaaaccaaaccgtatacttatttatcttgcggttcggatgacttttaaccttaaaaccgaac 26758190  T
Q  273 caaa 276  Q
    ||||    
T  26758189 caaa 26758186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 238
Target Start/End: Original strand, 50578930 - 50579084
Alignment:
Q  80 ctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnncc--gcaccaaccgatccaacccaaactgcattggtttgatttagtt 177  Q
    |||||| | |||||||||||||||||||| |||||||| |||||||        |  ||||||||| |||||||||||||  |||||||||| |||        
T  50578930 cttttttacttgattttaatgttggaaactaaaaattgaatcgtctcgaaaaagctcgcaccaaccaatccaacccaaaccacattggtttggttt---- 50579025  T
Q  178 tcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatctt 238  Q
      |||| ||||||||| ||||||||||||||| |||||||| | |||||||||||||||||    
T  50579026 --gttcggattttatttttaaagtcaaccgaagcaaaccaaatcgcgtgcttttttatctt 50579084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 266
Target Start/End: Complemental strand, 54122099 - 54121993
Alignment:
Q  160 cattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttacc 259  Q
    ||||| |||| ||| |||| |||| ||||||||| | ||||||||||||||||||||||   || | ||||||||||||||| ||||||||||||||| |    
T  54122099 cattgttttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaaccaaaccgcatacttttttatcttacggttcggatgacttttaac 54122000  T
Q  260 ttcaaaa 266  Q
     ||||||    
T  54121999 ctcaaaa 54121993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 133 - 278
Target Start/End: Original strand, 17144707 - 17144851
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    ||||| |||||||||||||||||||  ||||||||||  || ||||  ||| |||| |||| | ||||||||||||||||||||||   || | | ||||    
T  17144707 ccgcatcaaccgatccaacccaaaccacattggtttggcttggtttgcttcggattctattttaaaagtcaaccgaaccaaaccaatccgcatac-tttt 17144805  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    |||||| || || |||||||||||| | |||||||| |||||||||    
T  17144806 tatcttgcggtttggatgacttttagcctcaaaaccgaaccaaacc 17144851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 26291933 - 26292014
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaa 214  Q
    ||||| ||||||||| |||||||| |||||||||||||||| |||| ||||||||| |||| | ||| ||||||||||||||    
T  26291933 ccgcatcaaccgatctaacccaaattgcattggtttgatttggtttggttcagattctattttaaaaatcaaccgaaccaaa 26292014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 4554852 - 4554701
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    |||||| ||||||||  | |||||||||||| |||||||||| | ||||||||        ||||| ||||||||||||| ||||| ||||| ||||| |    
T  4554852 gttttaactttttaacctaattttaatgttgcaaacaaaaaaatttatcgtctaaaaaaaaccgcatcaaccgatccaactcaaaccgcattagtttggt 4554753  T
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgc 223  Q
    || |||| |||  ||| ||| | |||||||||||||||||||||||| ||||    
T  4554752 ttggtttggtttggatgttacttttaaagtcaaccgaaccaaaccaaattgc 4554701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 22473070 - 22473153
Alignment:
Q  135 gcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||  ||   | |||||||| |||||||| |||||||||||||    
T  22473070 gcaccaaccgatccaacacaaactacattggtttgatttggtttaatttgaagtttattctaaaagtcaatcgaaccaaaccaa 22473153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 37045471 - 37045330
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgt--ctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttga 170  Q
    |||| |||||||||  ||||||||||||||||||||||||||| |||||||  |        |||||||||||||| ||||||||||   |||||||||     
T  37045471 gtttcagctttttatcttgattttaatgttggaaacaaaaaatcgtatcgtcacgaaaaaaaccgcaccaaccgatacaacccaaaccatattggtttg- 37045373  T
Q  171 tttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
        |||| |||| ||||||||| |||||| |||||||||||||||||    
T  37045372 ----gtttggttcggattttatt-ttaaagccaaccgaaccaaaccaa 37045330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 235
Target Start/End: Original strand, 5640658 - 5640812
Alignment:
Q  82 ttttaagttgattttaatgttggaaacaaaaaattgtatcgtct-nnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcg 180  Q
    |||||| ||||||||||||||||||||||||||||||||  |||        ||||||| ||||||||||||||||| || |||||| | ||| | || |    
T  5640658 ttttaacttgattttaatgttggaaacaaaaaattgtattctctcgaaaaaaccgcaccgaccgatccaacccaaaccgccttggttaggttt-ggttgg 5640756  T
Q  181 ttcagatttta-ttcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttat 235  Q
    ||| ||||||| || |||| | |||||||||||| |||| |||  |||||||||||    
T  5640757 ttcggattttattttttaaggccaaccgaaccaatccaaattgtatgcttttttat 5640812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 285
Target Start/End: Complemental strand, 44651055 - 44650917
Alignment:
Q  147 ccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcg 246  Q
    |||||||||||   |||| ||||  || |||| |||| ||||||||| |||||||||||| |||||||||||   || || ||||||||  ||||  |||    
T  44651055 ccaacccaaaccatattgatttggattggtttggttcggattttatttttaaagtcaaccaaaccaaaccaaaccgcatgtttttttattctacggctcg 44650956  T
Q  247 gatgacttttaccttcaaaaccaaaccaaaccaaaccgc 285  Q
    ||||||||||||| |||||||  || ||||||| |||||    
T  44650955 gatgacttttaccctcaaaactgaatcaaaccacaccgc 44650917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 285
Target Start/End: Complemental strand, 45629351 - 45629146
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgatt 172  Q
    |||||| |||||||| ||||||||||||||||||||||||||    || ||||       ||||||||| | ||| || |||||| | ||||||||||||    
T  45629351 gttttacctttttaatttgattttaatgttggaaacaaaaaaaaa-attgtctataaaa-ccgcaccaatcaatctaatccaaaccgtattggtttgatt 45629254  T
Q  173 tagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaac 272  Q
    | |||     | || |||||| | |||||||||| || |||||||| |||| | ||| |||||||| || ||||||||||||||| | | |||||| ||     
T  45629253 tggtt-----cggagtttattttaaaagtcaaccaaatcaaaccaaattgcatacttatttatcttgcggttcggatgacttttaaccttaaaaccgaat 45629159  T
Q  273 caaaccaaaccgc 285  Q
    |||||||||||||    
T  45629158 caaaccaaaccgc 45629146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 5681430 - 5681516
Alignment:
Q  82 ttttaagttgattttaatgttggaaacaaaaaattgtatcgtct-nnnnnnnccgcaccaaccgatccaacccaaactgcattggtt 167  Q
    |||||| ||||||||||||||||||||||||||||||||  |||        ||||||| ||||||||||||||||| |||||||||    
T  5681430 ttttaacttgattttaatgttggaaacaaaaaattgtattctctcgaaaaaaccgcaccgaccgatccaacccaaaccgcattggtt 5681516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 25465963 - 25465911
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    |||||||| |||||| ||||||||||||||| |||||||||||||||| ||||    
T  25465963 gttttagccttttaacttgattttaatgttgaaaacaaaaaattgtattgtct 25465911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 52632187 - 52632098
Alignment:
Q  81 tttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttg 169  Q
    ||||||| | |||||||||||||||||||||||||| | | ||||        ||||||||||| |||||||||||||||||||||||||    
T  52632187 tttttaactcgattttaatgttggaaacaaaaaattatgttgtcttgaaaaaaccgcaccaaccaatccaacccaaactgcattggtttg 52632098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 5671933 - 5671971
Alignment:
Q  82 ttttaagttgattttaatgttggaaacaaaaaattgtat 120  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  5671933 ttttaacttgattttaatgttggaaacaaaaaattgtat 5671971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 43030454 - 43030377
Alignment:
Q  201 tcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||||||||||||||  ||| | |||||||||||| ||||||| ||||||||||   ||||||| ||| ||||||    
T  43030454 tcaaccgaaccaaaccaaactgcatacttttttatcttgcgattcgcatgacttttatgctcaaaactaaatcaaacc 43030377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 30739555 - 30739599
Alignment:
Q  81 tttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||    
T  30739555 tttttaacttgattttaatgttggaaataaaaaattgcatcgtct 30739599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 44651114 - 44651080
Alignment:
Q  80 ctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    |||||||| ||||||||||||||||||||||||||    
T  44651114 ctttttaacttgattttaatgttggaaacaaaaaa 44651080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 25919177 - 25919222
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgt 118  Q
    ||||||||||||||| ||||||| ||||||||||| |||| |||||    
T  25919177 gttttagctttttaatttgatttaaatgttggaaaaaaaatattgt 25919222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 48167426 - 48167385
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    ||||||| ||||||| || |||||||||||||||||||||||    
T  48167426 gttttagatttttaatttcattttaatgttggaaacaaaaaa 48167385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 33360989 - 33360953
Alignment:
Q  265 aaccaaaccaaaccaaaccgcaccgggaacaccccta 301  Q
    |||| |||||||||||||||||||| |||||||||||    
T  33360989 aaccgaaccaaaccaaaccgcaccgcgaacaccccta 33360953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 92 - 278
Target Start/End: Original strand, 27571980 - 27572167
Alignment:
Q  92 attttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagatttt 190  Q
    ||||||||||||||||||||||||||||| ||||        ||||||||||||||||||||||||| ||||||||||| ||| |||| |||| ||||||    
T  27571980 attttaatgttggaaacaaaaaattgtattgtctcgaaaaaaccgcaccaaccgatccaacccaaaccgcattggtttggtttggtttggttcggatttt 27572079  T
Q  191 attcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||| | |||| |||||||||||||||||   || |||||||||| ||| || ||||||||||||||| | |||||||| |||||||||    
T  27572080 attttaaaagacaaccgaaccaaaccaaaccgcatgcttttttaccttgcggttcggatgacttttaacctcaaaaccgaaccaaacc 27572167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 81 - 258
Target Start/End: Complemental strand, 14652607 - 14652433
Alignment:
Q  81 tttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn--ccgcaccaaccgatccaacccaaactgcattggtttgatttagttt 178  Q
    ||||||| ||||||||||||||| ||||||||||||| |||||||         | ||||||||||||||||||||||  |||||||||||     ||||    
T  14652607 tttttaacttgattttaatgttgaaaacaaaaaattgcatcgtctcgaaaaaaactgcaccaaccgatccaacccaaatcgcattggtttg-----gttt 14652513  T
Q  179 cgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttac 258  Q
     |||||||||||||| ||||||||||| |||||||| ||| | || || |||||||||||| | |||| |||| ||||||    
T  14652512 ggttcagattttatttttaaagtcaactgaaccaaatcaaatcgcatgtttttttatcttatggttcgaatgatttttac 14652433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 41455031 - 41454884
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgt-atcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttga 170  Q
    ||||||||||||||| ||||||||||||||||||||||||||   | ||  |||        |||||||||| ||||||| |||||| |||||||||||     
T  41455031 gttttagctttttaatttgattttaatgttggaaacaaaaaaaaattattatcttaacaaaaccgcaccaacagatccaatccaaaccgcattggtttgg 41454932  T
Q  171 tttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    ||| |||| |||||||||||||| | ||||||||||||||| ||||||    
T  41454931 tttggtttggttcagattttattttaaaagtcaaccgaaccgaaccaa 41454884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 278
Target Start/End: Complemental strand, 11402756 - 11402552
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtc-tnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||| |        ||||||||| |||| |||||||||  |||||||||| |    
T  11402756 gtttcagctttttaacttgattttaatgttggaaacaaaaaattgtatcgtcttaaaaaaatcgcaccaactgatctaacccaaaccacattggtttg-t 11402658  T
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaa 271  Q
     | |||| ||||  ||||| || |||||||||||||  |||||| ||   || || ||||||||||| |||||  |||| |||||||| | || ||||||    
T  11402657 ctggtttggttcgaattttgtttttaaagtcaaccgggccaaacaaaaccgcatg-ttttttatcttgcgatttagatggcttttacccttaataccaaa 11402559  T
Q  272 ccaaacc 278  Q
    |||||||    
T  11402558 ccaaacc 11402552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 135 - 255
Target Start/End: Original strand, 22747552 - 22747672
Alignment:
Q  135 gcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgctttttta 234  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||| ||||| |||||||| | |||||||| ||||||||| |||   || ||   |||||    
T  22747552 gcaccaaccgatccaacccaaactgcattagtttggtttggttttgttcaaattttattttaaaagtcaatcgaaccaaatcaaaccgcatgtactttta 22747651  T
Q  235 tcttacgattcggatgacttt 255  Q
    |||| || |||||||||||||    
T  22747652 tcttgcggttcggatgacttt 22747672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 18845675 - 18845623
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  18845675 gttttggctttttaacttgattttaatgttggaaacaaaaaattgtatcgtct 18845623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 278
Target Start/End: Complemental strand, 6595144 - 6594933
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnncc-gcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    |||||| ||||||||  |||||||||||||||||||||||||   ||||||||        | ||| |||||||||||||||||||  |||| ||||| |    
T  6595144 gttttaactttttaatctgattttaatgttggaaacaaaaaaaattatcgtctaaaaaaaactgcatcaaccgatccaacccaaaccacattagtttggt 6595045  T
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcg-----tgcttttttatcttacgattcggatgacttttaccttcaaaa 266  Q
    || ||||  ||  ||| ||||| ||||||||||||||||| |||||| |         || |||||||||||| ||||| ||||||||||||||||||||    
T  6595044 ttggtttgatttggatgttatttttaaagtcaaccgaaccgaaccaaatcaaaccaaatgtttttttatcttatgattcagatgacttttaccttcaaaa 6594945  T
Q  267 ccaaaccaaacc 278  Q
    |  |||||||||    
T  6594944 cggaaccaaacc 6594933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 278
Target Start/End: Original strand, 35240802 - 35240946
Alignment:
Q  139 caaccgatccaacccaaactgcattggtttgatttagtttcgtt-----cagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgctttttt 233  Q
    |||||||||||| ||||| |||||| ||||||||| |||| |||     | ||||||||| |||||||||||||||||||| |||   || | ||||||     
T  35240802 caaccgatccaatccaaaatgcatttgtttgatttggtttggtttggttcggattttatttttaaagtcaaccgaaccaaatcaaaccgcatactttttc 35240901  T
Q  234 atcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    | |||||| ||||||||| ||||| | |||||| | |||||||||    
T  35240902 agcttacggttcggatgaattttagcctcaaaatcgaaccaaacc 35240946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 278
Target Start/End: Original strand, 20191961 - 20192101
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    |||||| |||||||||||  ||||| |||||||||||||||||||     | ||||||||| | |||||||||||||||||| ||| |  | || |||||    
T  20191961 ccgcacaaaccgatccaattcaaaccgcattggtttgatttagtt-----cggattttattttaaaagtcaaccgaaccaaatcaaatcacatgtttttt 20192055  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
     ||||| |  ||| ||||||||||| | |||||||| ||| |||||    
T  20192056 aatcttgcagttcagatgacttttaacatcaaaaccgaactaaacc 20192101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 40692598 - 40692501
Alignment:
Q  134 cgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    ||||||||||||||||| ||||||   ||| || |||||| ||||  |||| |||||||| | |||||||||||||||||||||| | || ||||||||    
T  40692598 cgcaccaaccgatccaaaccaaacataattagtatgatttggtttgattca-attttattttaaaagtcaaccgaaccaaaccaaatcgcatgcttttt 40692501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 691478 - 691519
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  691478 gttttaactttttaacttgattttaatgttggaaacaaaaaa 691519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 40884481 - 40884440
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  40884481 gttttagctttttaatttgattttaatgttggaaataaaaaa 40884440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 2589134 - 2589082
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    |||||| |||||||| ||||||||||  |||||||||||||||||||| ||||    
T  2589134 gttttaactttttaacttgattttaaaattggaaacaaaaaattgtattgtct 2589082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 12379015 - 12379051
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttg 169  Q
    ||||||||||||||||||| |||||||||||||||||    
T  12379015 ccgcaccaaccgatccaactcaaactgcattggtttg 12379051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 6633414 - 6633341
Alignment:
Q  139 caaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaacca 217  Q
    ||||||||||||| |||||  ||||||||||     |||| |||||||||||||| | |||||||||| ||||||||||    
T  6633414 caaccgatccaactcaaaccacattggtttg-----gtttggttcagattttattttaaaagtcaaccaaaccaaacca 6633341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 19402343 - 19402297
Alignment:
Q  75 tttagctttttaagttgattttaatgttggaaacaaaaaattgtatc 121  Q
    |||| |||||||  |||||||||||||||||||||||||||| ||||    
T  19402343 tttaactttttattttgattttaatgttggaaacaaaaaattatatc 19402297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 6367768 - 6367813
Alignment:
Q  80 ctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    |||||||| || |||||||||||||||||||| |||||||| ||||    
T  6367768 ctttttaactttattttaatgttggaaacaaagaattgtattgtct 6367813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 25495248 - 25495207
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    |||||| |||||||| ||||||||||||||| ||||||||||    
T  25495248 gttttacctttttaatttgattttaatgttgaaaacaaaaaa 25495207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 30265836 - 30265913
Alignment:
Q  201 tcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||||||||||||||  ||| || ||||||||||| || ||  ||||| |||||   ||||||||||||||||||    
T  30265836 tcaaccgaaccaaaccaaactgcatgtttttttatcttgcggtttagatgatttttatgctcaaaaccaaaccaaacc 30265913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 563828 - 563877
Alignment:
Q  74 ttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    |||||||||||||| || |||||||||||||||  |||||||||||| ||||    
T  563828 ttttagctttttaactttattttaatgttggaa--aaaaaattgtattgtct 563877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 733964 - 734000
Alignment:
Q  89 ttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  733964 ttgattttaatgttggaaacaaaaagttgtattgtct 734000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 12166209 - 12166265
Alignment:
Q  201 tcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgactttta 257  Q
    ||||||||||||||||||  ||| |||||||||||||  |||||  |||||||||||    
T  12166209 tcaaccgaaccaaaccaaactgcatgcttttttatctcgcgattttgatgactttta 12166265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 15068435 - 15068399
Alignment:
Q  269 aaaccaaaccaaaccgcaccgggaacacccctaggtc 305  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  15068435 aaaccgaaccaaaccgcaccgcgaacacccctaggtc 15068399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 17132068 - 17132148
Alignment:
Q  139 caaccgatccaacccaaactgcattggtttgatttagtttcgtt-----cagattttattcttaaagtcaaccgaaccaaa 214  Q
    |||||||||||| ||||| |||||| ||||||||| |||| |||     | ||||||||| | ||||||||||||||||||    
T  17132068 caaccgatccaatccaaattgcatttgtttgatttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaa 17132148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 34969491 - 34969451
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaa 113  Q
    ||||||| ||||||| ||||||||||||||| |||||||||    
T  34969491 gttttagttttttaacttgattttaatgttgaaaacaaaaa 34969451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 78 - 301
Target Start/End: Original strand, 11074321 - 11074538
Alignment:
Q  78 agctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgatttagtt 177  Q
    |||||||||| || |||||||||||||||||||||||| |||||||||       ||| | |||||||||||| |||||| |||||| |||| ||| |||    
T  11074321 agctttttaactttattttaatgttggaaacaaaaaatggtatcgtctcaaaaaaccgtatcaaccgatccaatccaaaccgcattgatttggtttggtt 11074420  T
Q  178 tcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaac 277  Q
      |||||||||||||| ||||||||||||||||||||||||   |  || |||||||||||| | |||||| |||||||||| |      |||| | |||    
T  11074421 aggttcagattttatttttaaagtcaaccgaaccaaaccaaaccgtatgtttttttatcttaaggttcggaagacttttaccct------caaatcgaac 11074514  T
Q  278 caaaccgcaccgggaacaccccta 301  Q
    |||||||||||| |||||||||||    
T  11074515 caaaccgcaccgcgaacaccccta 11074538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 140 - 267
Target Start/End: Original strand, 8165535 - 8165662
Alignment:
Q  140 aaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatctta 239  Q
    |||||||||||||||||| ||||| ||||| ||| |||| |||||||||||||| ||||||||||||||||| ||||||   || ||||| |||||| |     
T  8165535 aaccgatccaacccaaaccgcatttgtttggtttggtttggttcagattttatttttaaagtcaaccgaaccgaaccaaaccgcatgcttctttatcctg 8165634  T
Q  240 cgattcggatgacttttaccttcaaaac 267  Q
    || ||||||||| |||||||||||||||    
T  8165635 cggttcggatgatttttaccttcaaaac 8165662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 275
Target Start/End: Original strand, 32910296 - 32910488
Alignment:
Q  80 ctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnc--cgcaccaaccgatccaacccaaactgcattggtttgatttagtt 177  Q
    |||||||| |||||||||||||||||||||||||||||||||||||          | |||||||||||||||| ||||| ||||| |||||      ||    
T  32910296 ctttttaacttgattttaatgttggaaacaaaaaattgtatcgtctcgaaaaaaatcacaccaaccgatccaacacaaaccgcatttgtttg-----ttt 32910390  T
Q  178 tcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaa 275  Q
    | ||||||||| |||| ||||||||||||||||||||||||  ||| || ||||||||||| |  || |||||||||||| | |||||||| ||||||    
T  32910391 tggttcagattctatttttaaagtcaaccgaaccaaaccaaactgcatgtttttttatcttgcagtttggatgacttttatcctcaaaaccgaaccaa 32910488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 80 - 278
Target Start/End: Complemental strand, 17651911 - 17651712
Alignment:
Q  80 ctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgatttagttt 178  Q
    |||||||| | |||||||||||||||||||||||||||||| || |        ||||| ||||| |||||| |||||| ||||||||||| ||| |||     
T  17651911 ctttttaactcgattttaatgttggaaacaaaaaattgtattgtttcaaaaaaaccgcatcaaccaatccaaaccaaaccgcattggtttggtttggttc 17651812  T
Q  179 cgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
     |||| ||||||||| | |||||||||||||| ||| |||   || |||||||||| ||||| ||||| |||||||||| | |||||||| || ||||||    
T  17651811 agttcggattttattttaaaagtcaaccgaacaaaatcaaaccgcatgcttttttaccttacaattcgaatgacttttagcctcaaaaccgaatcaaacc 17651712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 135 - 276
Target Start/End: Original strand, 36203422 - 36203563
Alignment:
Q  135 gcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgctttttta 234  Q
    ||||||||| ||||||||||||| ||||| ||||| ||| |||  |||| |||| |||| | |||||||||||||||||| |||   || ||||||||||    
T  36203422 gcaccaaccaatccaacccaaaccgcattagtttggtttggttcggttcggattgtattttaaaagtcaaccgaaccaaatcaaaccgcatgctttttta 36203521  T
Q  235 tcttacgattcggatgacttttaccttcaaaaccaaaccaaa 276  Q
    |||| || || |||||||||||| | |||||||| |||||||    
T  36203522 tcttgcggtttggatgacttttaacctcaaaaccgaaccaaa 36203563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 278
Target Start/End: Complemental strand, 12973726 - 12973520
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaa-aaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    |||||| |||||||| ||||||||||||||| ||||||| |||   ||| ||||       |||||||||||||||||| ||||||  |||| ||||| |    
T  12973726 gttttaactttttaatttgattttaatgttgtaaacaaagaaagattattgtctaaaaaaaccgcaccaaccgatccaatccaaaccacattagtttggt 12973627  T
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaa 271  Q
    || ||||  ||| ||||||||| | ||| |||||| |||||||||||   || |  || |||||||| || ||||||||||||| | |||||||||| ||    
T  12973626 ttggtttgattcggattttattttcaaaatcaaccaaaccaaaccaaaccgcatatttatttatcttgcggttcggatgactttcagcttcaaaaccgaa 12973527  T
Q  272 ccaaacc 278  Q
    |||||||    
T  12973526 ccaaacc 12973520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 217
Target Start/End: Original strand, 23475029 - 23475173
Alignment:
Q  74 ttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct-nnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgatt 172  Q
    |||||||||||||| || ||||||||||||||||||||||||||||| | ||        | ||||| |||||| ||| |||||| ||||| ||||| ||    
T  23475029 ttttagctttttaacttaattttaatgttggaaacaaaaaattgtattgcctcgaagaaactgcacccaccgattcaatccaaaccgcattagtttggtt 23475128  T
Q  173 tagtttcgttcagattttattcttaaagtcaaccgaaccaaacca 217  Q
    | |||| ||||| |||||||| | ||| |||||||||||||||||    
T  23475129 tggttttgttcaaattttattttaaaaatcaaccgaaccaaacca 23475173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 26345035 - 26345117
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaac 215  Q
    |||||||||||||||||| |||||| ||||||||||| ||| |||| |||| ||||||||| | ||||||||||||| |||||    
T  26345035 ccgcaccaaccgatccaatccaaaccgcattggtttggttttgtttggttcggattttattttaaaagtcaaccgaatcaaac 26345117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 278
Target Start/End: Complemental strand, 17989152 - 17989008
Alignment:
Q  134 cgcaccaaccgatccaacccaaa-ctgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    ||||||||| ||||||||||||| | |||||| |||| ||||| || |||| ||||||||| | |||||||||||||||||| |||   |  ||  ||||    
T  17989152 cgcaccaacagatccaacccaaaaccgcattgatttggtttaggttggttcggattttattttaaaagtcaaccgaaccaaatcaaaccgtatg-gtttt 17989054  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    |||||| |||||| ||||||||||| | |||||||| |||||||||    
T  17989053 tatcttgcgattcagatgacttttagcctcaaaaccgaaccaaacc 17989008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 35992521 - 35992661
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct--nnnnnnnccgcaccaaccgatccaacccaaactgcattggtttga 170  Q
    |||||| |||||||| |||||||||||||||||| ||||||||||||| ||||         |||||||||||||||||| |||||| ||||| |||||     
T  35992521 gttttacctttttaacttgattttaatgttggaagcaaaaaattgtattgtctcgaaaaaaaccgcaccaaccgatccaaaccaaaccgcattagtttgg 35992620  T
Q  171 tttagtttcgttcagattttattcttaaagtcaaccgaacc 211  Q
    ||| |||| | |  ||||||||| | |||||||||| ||||    
T  35992621 tttggtttggattggattttattttaaaagtcaaccaaacc 35992661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 27507520 - 27507613
Alignment:
Q  185 gattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||||| | |||||||||||||| ||||||| |||| | ||| |||||||| || |||||||||||||||   |||||||| |||||||||    
T  27507520 gattttattttaaaagtcaaccgaactaaaccaaattgcatacttatttatcttgcggttcggatgacttttattctcaaaaccgaaccaaacc 27507613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 277
Target Start/End: Original strand, 21685519 - 21685663
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    |||||||||| ||||||| ||||||  ||||  |||| ||| |||| |||| ||||||||| | ||||||||| ||||||||||||   || ||| |||     
T  21685519 ccgcaccaactgatccaaaccaaaccacattaatttggtttggtttggttctgattttattttaaaagtcaactgaaccaaaccaaaccgcatgcatttg 21685618  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaac 277  Q
    |||||| || ||| ||||||||||| | | |||||| ||||||||    
T  21685619 tatcttgcggttcagatgacttttagccttaaaaccgaaccaaac 21685663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 8268803 - 8268700
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct--nnnnnnnccgcaccaaccgatccaacccaaactgcattggtttga 170  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||| || ||||         ||||||||||||||||||||||||| | ||| |||||     
T  8268803 gttttagctttttaacttgattttaatgttgtaaacaaaaaattgcattgtctggtaagaaaccgcaccaaccgatccaacccaaaccgtattagtttgg 8268704  T
Q  171 ttta 174  Q
    ||||    
T  8268703 ttta 8268700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 35980199 - 35980250
Alignment:
Q  74 ttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  35980199 ttttacctttttaacttgattttaatgttggaaacaaaaaattgtattgtct 35980250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 9330522 - 9330443
Alignment:
Q  94 tttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgatt 172  Q
    ||||||||||||||||||||||||||| ||||        |||||||||| |||| ||||||||||||||||||||||||    
T  9330522 tttaatgttggaaacaaaaaattgtattgtctctaaaaaaccgcaccaactgatcaaacccaaactgcattggtttgatt 9330443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 52828885 - 52828776
Alignment:
Q  175 gtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaacca 274  Q
    |||| |||||||||||||| | |||||||||||| |||||||||   || |||||| ||||||| || ||| |||||| |||| | | |||||| |||||    
T  52828885 gtttggttcagattttattttaaaagtcaaccga-ccaaaccaaacagcatgctttgttatcttgcggttcagatgacctttaaccttaaaaccgaacca 52828787  T
Q  275 aaccaaaccgc 285  Q
    |||||||||||    
T  52828786 aaccaaaccgc 52828776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 173
Target Start/End: Original strand, 15880073 - 15880171
Alignment:
Q  75 tttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgattt 173  Q
    |||| |||||||| |||||||||||||||||||||||||||||| | ||||         |||||||||||||||||| |||  |||||| ||||||||    
T  15880073 tttacctttttaacttgattttaatgttggaaacaaaaaattgtgttgtctaaaaaaaatgcaccaaccgatccaacctaaatcgcattgatttgattt 15880171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 276
Target Start/End: Original strand, 25559977 - 25560116
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    ||||||||||||||||||  ||||| ||||||||||  ||| |||| |||| || |||||| | |||||||||||||||   ||||   || | ||||||    
T  25559977 ccgcaccaaccgatccaattcaaaccgcattggttttgtttggtttggttcgga-tttattttaaaagtcaaccgaacc---ccaaaccgcatacttttt 25560072  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaa 276  Q
    ||||||||| |||| |||||||||| | |||||| | |||||||    
T  25560073 tatcttacggttcgaatgacttttaacctcaaaatcgaaccaaa 25560116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 50471386 - 50471346
Alignment:
Q  76 ttagctttttaagttgattttaatgttggaaacaaaaaatt 116  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  50471386 ttagctttttaatttgattttaatgttggaaacaaaaaatt 50471346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 35980416 - 35980509
Alignment:
Q  185 gattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||||| | |||||||| ||||| |||||||    | |||||||||| ||| || ||||||||||||||| | |||||||| |||||||||    
T  35980416 gattttattttaaaagtcaatcgaacaaaaccaaaccacatgcttttttaccttgcggttcggatgacttttagcctcaaaaccgaaccaaacc 35980509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 10847452 - 10847504
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    |||||| |||||||| ||  |||||||||||||||||||||||||||| ||||    
T  10847452 gttttaactttttaattttgttttaatgttggaaacaaaaaattgtattgtct 10847504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 276
Target Start/End: Original strand, 16537824 - 16537957
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    ||||| |||| ||||||||||||||||||||||||||          |||| ||||||||| | ||||| |||| ||||||| |||   || || |||||    
T  16537824 ccgcatcaacagatccaacccaaactgcattggtttg----------gttcggattttattttaaaagtgaaccaaaccaaatcaaaccgcatgtttttt 16537913  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaa 276  Q
    |||||| || ||  |||||||||||||||||||| | |||||||    
T  16537914 tatcttgcggtttagatgacttttaccttcaaaatcgaaccaaa 16537957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 32938004 - 32938044
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaa 113  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  32938004 gttttagctttttaacttgattttaatgtaggaaacaaaaa 32938044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 2490058 - 2490149
Alignment:
Q  186 attttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaac 277  Q
    |||||||| | ||||||||| |||||||||||| | || | ||| |||||||| || ||||||| ||||||| | |||||| | ||||||||    
T  2490058 attttattttaaaagtcaactgaaccaaaccaaatcgcatacttatttatcttgcggttcggataacttttagcctcaaaatcgaaccaaac 2490149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 6694293 - 6694332
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaa 112  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  6694293 gttttaactttttaatttgattttaatgttggaaacaaaa 6694332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 278
Target Start/End: Original strand, 9962135 - 9962269
Alignment:
Q  139 caaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatctt 238  Q
    |||||||||||||||||||  |||||||||| ||| ||||       ||||||||   |||||||||| || ||||| ||   || || |||||||||||    
T  9962135 caaccgatccaacccaaaccacattggtttggtttggtttga-----attttatttgaaaagtcaaccaaatcaaacaaaaccgcctgtttttttatctt 9962229  T
Q  239 acgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
     ||||||||||||||||||  ||||||||  |||||||||    
T  9962230 gcgattcggatgacttttagtttcaaaactgaaccaaacc 9962269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 34914289 - 34914193
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttg 169  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||   ||| ||||       ||||| |||||||||||| ||||||  ||||||||||    
T  34914289 gttttaggtttttaatttgattttaatattggaaacaaaaaaaaatattgtctaaaaaaaccgcaacaaccgatccaatccaaaccacattggtttg 34914193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 39158311 - 39158385
Alignment:
Q  144 gatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    ||||||||||||||  |||||||||| ||| ||||  ||||||||||||| | |||| | ||||||| |||||||    
T  39158311 gatccaacccaaaccacattggtttggtttggtttgattcagattttattttaaaagccgaccgaactaaaccaa 39158385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 8211253 - 8211220
Alignment:
Q  269 aaaccaaaccaaaccgcaccgggaacacccctag 302  Q
    ||||||||||||||||||||| ||||||||||||    
T  8211253 aaaccaaaccaaaccgcaccgcgaacacccctag 8211220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 15882074 - 15882119
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgt 118  Q
    |||||| |||||||| ||||||| ||||||| ||||||||||||||    
T  15882074 gttttatctttttaatttgatttaaatgttgaaaacaaaaaattgt 15882119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 24911036 - 24911081
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagttt 178  Q
    |||||| |||||| |||| |||||||||||||||||| ||||||||    
T  24911036 ccgcacaaaccgaaccaatccaaactgcattggtttggtttagttt 24911081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 32954075 - 32953999
Alignment:
Q  201 tcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||||||||||||||   || ||||||||||||| | | || ||||||||||||  ||||||||| |||||||||    
T  32954075 tcaaccgaaccaaaccaaaccgcatgcttttttatctcaggttt-ggatgacttttatgttcaaaaccgaaccaaacc 32953999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 44055762 - 44055685
Alignment:
Q  189 ttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaa 266  Q
    ||||| |||||||||||||||| ||||||| | || || ||||||||||| |  |||| |||| ||||||| ||||||    
T  44055762 ttatttttaaagtcaaccgaactaaaccaaatcgcatgtttttttatcttgcagttcgaatgatttttaccctcaaaa 44055685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 50310680 - 50310567
Alignment:
Q  164 ggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttca 263  Q
    |||||||||  |||| |||| | ||||||| | ||| |||| | |||||||| ||  ||| || ||||||||||| |||||||||| ||||||||  |||    
T  50310680 ggtttgattctgtttggttcggtttttattttaaaattcaatcaaaccaaactaaactgcatgtttttttatcttgcgattcggataacttttactctca 50310581  T
Q  264 aaaccaaaccaaac 277  Q
    ||  ||||||||||    
T  50310580 aatacaaaccaaac 50310567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 382224 - 382180
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattg 117  Q
    ||||||| ||||||| ||||||||||||||  |||||||||||||    
T  382224 gttttagttttttaacttgattttaatgtttaaaacaaaaaattg 382180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 3935525 - 3935417
Alignment:
Q  170 atttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaacca 269  Q
    ||||| ||| |||| ||||||||| | ||||||||||||| |||||||   ||| | ||| ||||||||||| |||  ||||||||||   |||||| |     
T  3935525 atttaatttggttcggattttattttaaaagtcaaccgaatcaaaccatactgcatacttatttatcttacggttcatatgacttttagtctcaaaatcg 3935426  T
Q  270 aaccaaacc 278  Q
    |||||||||    
T  3935425 aaccaaacc 3935417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 5155451 - 5155483
Alignment:
Q  269 aaaccaaaccaaaccgcaccgggaacaccccta 301  Q
    ||||||||||||||||||||| |||||||||||    
T  5155451 aaaccaaaccaaaccgcaccgcgaacaccccta 5155483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 50153497 - 50153437
Alignment:
Q  150 acccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaac 210  Q
    ||||||||| |||  ||||||||| |||| |||| ||||||||| | ||||||||||||||    
T  50153497 acccaaactacatacgtttgatttggtttggttcggattttattttaaaagtcaaccgaac 50153437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 73 - 278
Target Start/End: Original strand, 32223236 - 32223441
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgatt 172  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||| ||||       ||||| ||||||||| ||||||||| ||||| ||||| ||    
T  32223236 gttttacctttttaactagattttaatgttggaaacaaaaaattgtattgtctcaaaaaaccgcatcaaccgatctaacccaaaccgcatttgtttggtt 32223335  T
Q  173 tagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaac 272  Q
    | |||| ||||||||| | || | ||||| ||| |||| || ||||   || |||||||||||||| ||||| |||||||||||| | |||||||| ||     
T  32223336 tggtttggttcagattgtgttttaaaagtaaacggaacaaatccaaaccgcatgcttttttatctttcgatttggatgacttttaacctcaaaaccgaat 32223435  T
Q  273 caaacc 278  Q
    ||||||    
T  32223436 caaacc 32223441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 267
Target Start/End: Complemental strand, 15724049 - 15723853
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn--ccgcaccaaccgatccaacccaaactgcattggtttga 170  Q
    |||||| || |||||  ||||||||||||||||||||||||| | ||||||||         ||||| ||||||||||||||||||| ||||| |||||     
T  15724049 gttttacctctttaacctgattttaatgttggaaacaaaaaaatttatcgtcttgaaaaaaaccgcatcaaccgatccaacccaaaccgcattagtttgg 15723950  T
Q  171 tttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaac 267  Q
    ||| |||| |||  ||| ||||| ||||||||||||||||||||| ||  ||| | ||||||||| ||||| ||| ||||| |||||||||||||||    
T  15723949 tttggtttggtttggatgttatttttaaagtcaaccgaaccaaactaaactgcatacttttttatattacggttcagatgatttttaccttcaaaac 15723853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 277
Target Start/End: Original strand, 48293339 - 48293526
Alignment:
Q  81 tttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttc 179  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||        || |||||||||||||||||||||| |||||||||||              
T  48293339 tttttaactcgattttaatgttggaaacaaaaaattgtattgtctcgaaaaaacctcaccaaccgatccaacccaaaccgcattggtttg---------- 48293428  T
Q  180 gttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaac 277  Q
    |||| ||||||||| | |||| |||||||||||||||||   || |||||||||| ||| || ||||||||||||||| | |||||||| ||||||||    
T  48293429 gttcggattttattttaaaagacaaccgaaccaaaccaaaccgcatgcttttttaccttgcggttcggatgacttttaacctcaaaaccgaaccaaac 48293526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 73 - 266
Target Start/End: Original strand, 23120172 - 23120367
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn--ccgcaccaaccgatccaacccaaactgcattggtttga 170  Q
    |||||| ||||||||  ||||||||||||||||||||||||| | ||||||||         | |||  |||| |||||||||||||  |||| |||||     
T  23120172 gttttaactttttaacctgattttaatgttggaaacaaaaaaatttatcgtctagaaaaaaactgcatgaacctatccaacccaaaccacattagtttgg 23120271  T
Q  171 tttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaa 266  Q
    ||| |||| |||  ||| || || |||||||||| |||||||||||||   || |||||||||||||| || ||||||||||||||||||||||||    
T  23120272 tttggtttggtttggatgttttttttaaagtcaatcgaaccaaaccaaaccgcatgcttttttatcttgcggttcggatgacttttaccttcaaaa 23120367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 277
Target Start/End: Original strand, 18536559 - 18536765
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn--ccgcaccaaccgatccaacccaaactgcattggtttga 170  Q
    |||||| |||||||| | || ||||| ||||||||||||| ||||||| ||||         |||||||||| |||||||| ||||||||||| |||||     
T  18536559 gttttacctttttaactcgactttaaggttggaaacaaaatattgtattgtctcaaaaaaaaccgcaccaactgatccaactcaaactgcatttgtttgg 18536658  T
Q  171 tttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaa 270  Q
    ||| |||| |||| |||| | || | ||||||||||||||||| ||||  || |||||||||||||||  | || |||||| ||||| |||||||||| |    
T  18536659 ttttgtttggttcggattgtgttttaaaagtcaaccgaaccaacccaaactgtgtgcttttttatcttgtggtttggatgaattttagcttcaaaaccga 18536758  T
Q  271 accaaac 277  Q
    || ||||    
T  18536759 acaaaac 18536765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 133 - 278
Target Start/End: Original strand, 11031617 - 11031757
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    |||||||||||||||||||||||||  ||||| |||||||| | || ||| |||||||||| | |||||||||| ||||||||||     | ||||||||    
T  11031617 ccgcaccaaccgatccaacccaaaccacattgatttgatttgggttggttaagattttattttaaaagtcaaccaaaccaaacca-----catgcttttt 11031711  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    |||| | ||||| || ||||||||| | |||||||||| |||||||    
T  11031712 tatcatgcgatttggctgacttttagcctcaaaaccaacccaaacc 11031757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 133 - 278
Target Start/End: Complemental strand, 20986527 - 20986382
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    |||||| ||||||| ||| |||||| ||||||||||| ||| |||| ||||| |||||||| |  |||||||||||||||||||||   || | ||| ||    
T  20986527 ccgcacaaaccgattcaatccaaaccgcattggtttggtttggtttggttcatattttattttataagtcaaccgaaccaaaccaaaccgcatacttgtt 20986428  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    |||||| || || |||||||||||| |||||||||| || ||||||    
T  20986427 tatcttgcggtttggatgacttttagcttcaaaaccgaaacaaacc 20986382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 278
Target Start/End: Original strand, 36106401 - 36106542
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaacc-aacttgcgtgctttt 231  Q
    |||||||||| |||||||| ||||| |||||||||||     |||| |||| ||||||||| | |||||||||||||||||||| ||   || || ||||    
T  36106401 ccgcaccaactgatccaactcaaaccgcattggtttg-----gtttggttcggattttattttaaaagtcaaccgaaccaaaccaaaaccgcatgttttt 36106495  T
Q  232 ttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||| || ||||||||||||||| | |||||||| |||||||||    
T  36106496 ttatcttgcggttcggatgacttttaacctcaaaaccgaaccaaacc 36106542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 277
Target Start/End: Complemental strand, 48338503 - 48338303
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaacc-gatccaacccaaactgcattggtttga 170  Q
    |||||| |||||||| | ||||||||||||| |||||||||||||||| ||||        || |||||||| |||||||  ||||| |||||| ||||     
T  48338503 gttttacctttttaactcgattttaatgttgaaaacaaaaaattgtattgtctcgaaaaaaccacaccaacccgatccaattcaaaccgcattgatttgg 48338404  T
Q  171 tttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaa 270  Q
    ||| |||| |     |||||||| | ||||||||||||||||||||||  ||| || |||||||||||||| ||||||||||||||| | | |||||| |    
T  48338403 tttggtttgg-----attttattttaaaagtcaaccgaaccaaaccaaactgcatg-ttttttatcttacggttcggatgacttttaaccttaaaaccga 48338310  T
Q  271 accaaac 277  Q
    |||||||    
T  48338309 accaaac 48338303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 278
Target Start/End: Original strand, 5122310 - 5122506
Alignment:
Q  80 ctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn---ccgcaccaaccgatccaacccaaactgcattggtttgatttagt 176  Q
    |||||||| |||||||||||||| ||||||||||||||||| ||||          || ||| || |||||||||||| ||  ||||||||||     ||    
T  5122310 ctttttaacttgattttaatgttagaaacaaaaaattgtattgtctcgaaaaaaagccacacaaatcgatccaacccagaccacattggtttg-----gt 5122404  T
Q  177 ttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaa 276  Q
    || |||| ||||||||| |||||||||||||||||||| |||   || ||||||||||||||  | ||   |||||||||||| |||||||| |||||||    
T  5122405 ttggttcggattttatttttaaagtcaaccgaaccaaatcaaaccgcatgcttttttatcttgtggtttatatgacttttaccctcaaaaccgaaccaaa 5122504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 286
Target Start/End: Original strand, 40806800 - 40806948
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    |||||| |||||| |||| |||||||||||||||||| ||| |||| | | |  |||||     ||| |||||||||||||||||| | || ||||||||    
T  40806800 ccgcacaaaccgaaccaatccaaactgcattggtttggtttggtttggatgatttttta-----aaaatcaaccgaaccaaaccaaatcgcatgcttttt 40806894  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaaccaaaccgca 286  Q
    |||||  || || ||||||||||||   |||||||| |||||||||| ||||||    
T  40806895 tatctcgcggtttggatgacttttatgctcaaaaccgaaccaaaccacaccgca 40806948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 23625878 - 23626002
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    |||||||||||||||||| |||||| |||||| |||| ||| | ||  ||||||||||||| | |||||||| |||||||||| ||   || | ||||||    
T  23625878 ccgcaccaaccgatccaatccaaaccgcattgatttggtttgggttgattcagattttattttaaaagtcaagcgaaccaaacaaaaccgcatacttttt 23625977  T
Q  233 tatcttacgattcggatgactttta 257  Q
    ||| ||  |||| ||||||||||||    
T  23625978 tattttgtgatttggatgactttta 23626002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 8312050 - 8312003
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtat 120  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  8312050 gttttagctttttaacttgattttaatgttgtaaacaaaaaattgtat 8312003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 48684941 - 48684894
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtat 120  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  48684941 gttttagctttttaatttgattttaatgttggaaataaaaaattgtat 48684894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 8484763 - 8484695
Alignment:
Q  141 accgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaa 209  Q
    |||||||||| |||||| ||||||||||| |||||||| |||||  ||||||| | |||||||||||||    
T  8484763 accgatccaatccaaaccgcattggtttggtttagtttggttcatgttttattttaaaagtcaaccgaa 8484695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 48602445 - 48602542
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttg 169  Q
    |||||| |||||||| || |||||||||||| |||||| ||||||||| || |        ||||||||||||||||||||||||| |||||||||||    
T  48602445 gttttaactttttaacttaattttaatgttgaaaacaacaaattgtattgtttcgataaaaccgcaccaaccgatccaacccaaaccgcattggtttg 48602542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 18319493 - 18319584
Alignment:
Q  80 ctttttaagttgatttt-aatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttg 169  Q
    |||||||| |||||||| ||||||  |||||||||||||||| ||||        ||||||||||||||||||||||||| |||||||||||    
T  18319493 ctttttaatttgatttttaatgttaaaaacaaaaaattgtattgtcttagaaaaaccgcaccaaccgatccaacccaaaccgcattggtttg 18319584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 18399188 - 18399097
Alignment:
Q  80 ctttttaagttgatttt-aatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttg 169  Q
    |||||||| |||||||| ||||||  |||||||||||||||| ||||        ||||||||||||||||||||||||| |||||||||||    
T  18399188 ctttttaatttgatttttaatgttaaaaacaaaaaattgtattgtcttagaaaaaccgcaccaaccgatccaacccaaaccgcattggtttg 18399097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 21069213 - 21069171
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaat 115  Q
    ||||||||||||||| ||||||||||||||| |||||||||||    
T  21069213 gttttagctttttaatttgattttaatgttgaaaacaaaaaat 21069171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 21069151 - 21069066
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    ||||||||||| |||||| |||||| |||||||||||| || |||| ||||  |||| ||| | |||||||||| |||| ||||||    
T  21069151 ccgcaccaaccaatccaatccaaaccgcattggtttgagttggtttggttcgaatttaattttaaaagtcaaccaaaccgaaccaa 21069066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 29700885 - 29700844
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  29700885 gttttaggtttttaacttgattttaatgttggaaacaaaaaa 29700844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 277
Target Start/End: Complemental strand, 45983450 - 45983345
Alignment:
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaa 271  Q
    ||||||| |||  ||| ||||| ||||||||||||||| ||||||||   || || ||||||||||| || ||| ||| ||||||| ||||||| || ||    
T  45983450 ttagtttggtttggatgttatttttaaagtcaaccgaatcaaaccaaaccgcatgattttttatcttgcggttcagataacttttatcttcaaagccgaa 45983351  T
Q  272 ccaaac 277  Q
    ||||||    
T  45983350 ccaaac 45983345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 6102045 - 6101993
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    |||||| | |||||| ||||||||| |||||||||||||||||||||| ||||    
T  6102045 gttttatccttttaacttgattttactgttggaaacaaaaaattgtattgtct 6101993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 26674276 - 26674224
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    |||||| |||||||| | |||||||| ||||||||||||||||||||| ||||    
T  26674276 gttttacctttttaactcgattttaaagttggaaacaaaaaattgtattgtct 26674224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 29232905 - 29232865
Alignment:
Q  74 ttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  29232905 ttttagctgtttaatttgattttaatgttggaaacaaaaaa 29232865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 49641003 - 49640951
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    |||||| || ||||| ||||||||||||||||||| |||||||||||| ||||    
T  49641003 gttttaactctttaacttgattttaatgttggaaaaaaaaaattgtattgtct 49640951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 51907229 - 51907177
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    |||||| |||||||| ||||||||||||||| |||||||||||| ||| ||||    
T  51907229 gttttacctttttaacttgattttaatgttgaaaacaaaaaattatattgtct 51907177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 17794315 - 17794268
Alignment:
Q  74 ttttagctttttaagttgattttaatgttggaaa-caaaaaattgtat 120  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||||||    
T  17794315 ttttaactttttaacttgattttaatgttggaaaccaaaaaattgtat 17794268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 18396427 - 18396349
Alignment:
Q  135 gcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    |||||||||||||||||||||||  ||||||||||     |||| |||| ||||||||  | ||||||||| ||||||||||||    
T  18396427 gcaccaaccgatccaacccaaaccacattggtttg-----gttttgttcggattttatcttaaaagtcaactgaaccaaaccaa 18396349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 9058317 - 9058271
Alignment:
Q  74 ttttagctttttaagttgattttaatgttggaaacaaaaaattgtat 120  Q
    ||||| |||||||| ||| |||||||||| |||||||||||||||||    
T  9058317 ttttaactttttaacttggttttaatgttagaaacaaaaaattgtat 9058271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 17844902 - 17844852
Alignment:
Q  228 ttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    |||||||| ||||||||| ||||||||||| |||||||||  |||||||||    
T  17844902 ttttttattttacgattcagatgacttttagcttcaaaactgaaccaaacc 17844852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 35233210 - 35233256
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgta 119  Q
    |||||| ||||||||  |||||||||||||| |||||||||||||||    
T  35233210 gttttaactttttaacctgattttaatgttgaaaacaaaaaattgta 35233256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 45983541 - 45983500
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    |||||| ||||||||  |||||||||||||||||||||||||    
T  45983541 gttttaactttttaacctgattttaatgttggaaacaaaaaa 45983500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 11031556 - 11031604
Alignment:
Q  77 tagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    ||||||||| | | ||||||||||||| |||||||||||||||| ||||    
T  11031556 tagctttttgactcgattttaatgttgaaaacaaaaaattgtattgtct 11031604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 14866949 - 14866905
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattg 117  Q
    ||||||||||||||| |||||||| || ||| |||||||||||||    
T  14866949 gttttagctttttaacttgattttgatattgtaaacaaaaaattg 14866905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 28147941 - 28147901
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaa 113  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  28147941 gttttagctttttaatttgattttaacgttgaaaacaaaaa 28147901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 278
Target Start/End: Original strand, 5862608 - 5862753
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    |||||| ||||||| ||| |||||| | ||||||||||||| |||| |||| ||||||||| | ||||||||||||||||||||||   || | ||||||    
T  5862608 ccgcacaaaccgattcaatccaaaccgtattggtttgatttggtttggttcggattttattttaaaagtcaaccgaaccaaaccaaaccgcatacttttt 5862707  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||| || |||||  ||||||||||||| |||||| |||| ||||||    
T  5862708 tattttgcgatttagatgacttttaccctcaaaatcaaatcaaacc 5862753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 79 - 278
Target Start/End: Complemental strand, 44085639 - 44085449
Alignment:
Q  79 gctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgatttagtt 177  Q
    ||||||||| ||||||||||||||||||| |||||||||| | ||||        ||||||||||||||||||||||||| ||||||||||||||         
T  44085639 gctttttaacttgattttaatgttggaaa-aaaaaattgtgttgtctcgaaataaccgcaccaaccgatccaacccaaaccgcattggtttgatt----- 44085546  T
Q  178 tcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgc-ttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaa 276  Q
         ||||||||||| ||||||||||||||||||||||||   || ||| ||||||||||| || ||| ||||||||| ||| |||||||  |||||||    
T  44085545 -----cagattttatttttaaagtcaaccgaaccaaaccaaaccgcatgctttttttatcttgcggttcagatgactttaaccctcaaaactgaaccaaa 44085451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 277
Target Start/End: Original strand, 27301405 - 27301605
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    |||||| |||||||| | ||||||||| |||||||||||||||||||| ||||        ||||||||| |||||  |||||||| |||||||||||      
T  27301405 gttttacctttttaactcgattttaattttggaaacaaaaaattgtattgtctcaaaaaaaccgcaccaaacgatctgacccaaaccgcattggtttg-- 27301502  T
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaa 271  Q
       |||| ||||| |||||||| | ||||||||||||| ||||||||   || |||||||||||||| || | |||||| ||||||   |||||||| ||    
T  27301503 ---gtttggttcaaattttattttaaaagtcaaccgaatcaaaccaaaccgcatgcttttttatcttgcggtccggatggcttttaatctcaaaaccgaa 27301599  T
Q  272 ccaaac 277  Q
    ||||||    
T  27301600 ccaaac 27301605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 285
Target Start/End: Complemental strand, 17762885 - 17762695
Alignment:
Q  92 attttaatgttggaaacaaaaaattgtatcgtctnnnnnnn--ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattt 189  Q
    ||||||||||||||||||||||||||||| ||||         ||||||||||| |||||| ||||||  ||| |||||||||| |||     | |||||    
T  17762885 attttaatgttggaaacaaaaaattgtattgtctcgaaaaaaaccgcaccaaccaatccaatccaaaccacatcggtttgatttggtt-----cggattt 17762791  T
Q  190 tattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaaccaaaccgc 285  Q
    |||| | ||||||||||||||||||||||   || || ||||||||||  || ||||| ||||||||| | |||||||||||| |||||| |||||    
T  17762790 tattttaaaagtcaaccgaaccaaaccaaaccgcatgtttttttatctcgcggttcggttgacttttagcctcaaaaccaaacaaaaccacaccgc 17762695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 241
Target Start/End: Complemental strand, 13194041 - 13193896
Alignment:
Q  92 attttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagatttt 190  Q
    |||||||||||| ||||||||||||||||  |||        ||| ||||||||||||||||||||||||||||||||||||| |||     | ||||||    
T  13194041 attttaatgttgaaaacaaaaaattgtattatcttgaaaaaaccgtaccaaccgatccaacccaaactgcattggtttgatttggtt-----cggatttt 13193947  T
Q  191 attcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacg 241  Q
    ||| | ||||||||||||||||||||||   |  |||||||||||||||||    
T  13193946 attttaaaagtcaaccgaaccaaaccaaacagtatgcttttttatcttacg 13193896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 286
Target Start/End: Original strand, 12041608 - 12041719
Alignment:
Q  175 gtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaacca 274  Q
    |||| |||| ||||||||| | |||||||||||||||||| |||   || || |||||||||||||| ||| ||||||||||| | |||||||| |||||    
T  12041608 gtttggttcggattttattttaaaagtcaaccgaaccaaatcaaaccgcatgtttttttatcttacggttcagatgacttttagcctcaaaaccgaacca 12041707  T
Q  275 aaccaaaccgca 286  Q
    ||||| ||||||    
T  12041708 aaccacaccgca 12041719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 278
Target Start/End: Complemental strand, 28790664 - 28790466
Alignment:
Q  77 tagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct--nnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgattta 174  Q
    ||||||||||| | ||||||||||||||||||||||||||||||  |||         |||||||||||||||| ||||||||  ||||||||||         
T  28790664 tagctttttaactcgattttaatgttggaaacaaaaaattgtattatctcggaaaaaaccgcaccaaccgatccgacccaaaccacattggtttg----- 28790570  T
Q  175 gtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaacca 274  Q
    |||| |||  ||||||||| | ||||||||||||| | || |||   || |||||||||||||| || ||| ||||||||||| | |||||||  |||||    
T  28790569 gtttggtttggattttattttaaaagtcaaccgaatctaatcaaaccgcatgcttttttatcttgcggttcagatgacttttaacatcaaaactgaacca 28790470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 276
Target Start/End: Original strand, 30759626 - 30759768
Alignment:
Q  134 cgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgctttttt 233  Q
    |||||||||||||| ||| ||||| ||||||||||| ||| |||| ||||| |||||||| | |||| |||||||| ||||||||  ||| |||||||||    
T  30759626 cgcaccaaccgatctaacacaaaccgcattggtttggtttggtttggttcaaattttattttaaaagccaaccgaatcaaaccaaactgcatgctttttt 30759725  T
Q  234 atcttacgattcggatgacttttaccttcaaaaccaaaccaaa 276  Q
    || ||  ||  | ||||||||||| | |||||||  |||||||    
T  30759726 attttgtgacccagatgacttttaacctcaaaactgaaccaaa 30759768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 6946471 - 6946523
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  6946471 gttttacctttttaacttgattttaatgttggaaacaaaaaattgtattgtct 6946523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 21480795 - 21480909
Alignment:
Q  139 caaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatctt 238  Q
    |||||||| ||| | ||||||| ||| |||| ||| |||| |||||||||||||| | ||||||||||||||||||  || |||  |||||| |||||||    
T  21480795 caaccgattcaatcaaaactgcgttgatttgctttggtttagttcagattttattttaaaagtcaaccgaaccaaataaaattgtatgctttcttatctt 21480894  T
Q  239 acgattcggatgact 253  Q
     |  |||||||||||    
T  21480895 gcagttcggatgact 21480909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 256
Target Start/End: Complemental strand, 1331158 - 1330992
Alignment:
Q  82 ttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn--ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttc 179  Q
    |||||| | |||||||||||||||||||||||||||||| ||||         |||||||||| ||||||||||||||  |||||||||| ||| |        
T  1331158 ttttaactcgattttaatgttggaaacaaaaaattgtattgtctcgaaaaaaaccgcaccaactgatccaacccaaaccacattggtttggtttgg---- 1331063  T
Q  180 gttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgactttt 256  Q
          |||||||| | ||||||||||||||||||||||  ||| |||||||||| |||  | ||||||||| ||||    
T  1331062 ------attttattttaaaagtcaaccgaaccaaaccaatctgcatgcttttttaccttgtggttcggatgattttt 1330992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 11678154 - 11678114
Alignment:
Q  74 ttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  11678154 ttttagctttttaatttgattttaatgttggaaacaaaaaa 11678114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 11695632 - 11695592
Alignment:
Q  74 ttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  11695632 ttttagctttttaatttgattttaatgttggaaacaaaaaa 11695592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 31719999 - 31720046
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtat 120  Q
    |||||| |||||||| | ||||||||||||||||||||||||||||||    
T  31719999 gttttacctttttaactcgattttaatgttggaaacaaaaaattgtat 31720046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 36964186 - 36964133
Alignment:
Q  73 gttttagcttt-ttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    ||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||    
T  36964186 gttttagctttgttaacttgattttaatgttggatacaaaaatttgtatcgtct 36964133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 22014128 - 22014085
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaatt 116  Q
    ||||||||||||||| | |||||||||||||||||| |||||||    
T  22014128 gttttagctttttaactcgattttaatgttggaaacgaaaaatt 22014085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 44979814 - 44979891
Alignment:
Q  201 tcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||||||||||||||   || |||||||||||||  || || ||||||||||||   |||||||| |||||||||    
T  44979814 tcaaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttatgctcaaaaccgaaccaaacc 44979891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 32646417 - 32646373
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattg 117  Q
    |||||| |||||||  ||||| |||||||||||||||||||||||    
T  32646417 gttttaactttttattttgatcttaatgttggaaacaaaaaattg 32646373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 43452164 - 43452116
Alignment:
Q  229 tttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaac 277  Q
    ||||||||||||  ||||||||| |||||||||||||| | ||||||||    
T  43452164 tttttatcttacagttcggatgatttttaccttcaaaatcgaaccaaac 43452116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 277
Target Start/End: Complemental strand, 22413943 - 22413799
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    |||||||||||||||||  |||||| ||||||||||  |||  ||| |||||||||||||| | ||||||||||||||||||||||   || | ||| ||    
T  22413943 ccgcaccaaccgatccattccaaaccgcattggtttcgtttgtttttgttcagattttattttaaaagtcaaccgaaccaaaccaaaccgcatacttatt 22413844  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaac 277  Q
    ||||||  | ||||||||||||||| | ||||||||||| |||||    
T  22413843 tatcttctggttcggatgacttttaacctcaaaaccaaatcaaac 22413799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 73 - 218
Target Start/End: Original strand, 19135028 - 19135174
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    |||||| |||||||| | ||||||||||||| |||||||||||||||| ||||        || || |||||||||||| |||||  ||||| |||||||    
T  19135028 gttttacctttttaactcgattttaatgttgaaaacaaaaaattgtattgtctaaaaaaaaccacatcaaccgatccaatccaaatcgcattagtttgat 19135127  T
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    || |||| ||||| |||||||| | ||||||||||||||||||||||    
T  19135128 ttggtttggttcatattttattttaaaagtcaaccgaaccaaaccaa 19135174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 256
Target Start/End: Complemental strand, 30752698 - 30752513
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn---ccgcaccaaccgatccaacccaaactgcattggtttg 169  Q
    ||||||| ||||||| | |||||| | ||||||||||||||||||||| ||||          ||||||||| |||| ||||| |||| |||||||||||    
T  30752698 gttttagttttttaactcgattttgaagttggaaacaaaaaattgtattgtctcgaaaaaaaaccgcaccaaacgattcaacctaaaccgcattggtttg 30752599  T
Q  170 atttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgactttt 256  Q
    |||| ||||  ||   |||||||| | ||||||||||||||||||||||   || |||||||||||||| || ||| ||||||||||    
T  30752598 atttggtttgttttgaattttatt-taaaagtcaaccgaaccaaaccaaaccgcatgcttttttatcttgcggttcagatgactttt 30752513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 8064652 - 8064605
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtat 120  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8064652 gttttagctttttaacttgattttaatgttggaaacaaaaaattgtat 8064605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 28633040 - 28632913
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    ||||| |||||||||||||| |||| |||||| |||| ||  |||| ||||| || ||||| | ||||||||||||||||||| || | || || |||||    
T  28633040 ccgcatcaaccgatccaaccaaaaccgcattgatttggttcggtttggttcaaatattattttaaaagtcaaccgaaccaaacaaaatcgcatgtttttt 28632941  T
Q  233 tatcttacgattcggatgacttttacct 260  Q
    ||||||||| || | |||||||| ||||    
T  28632940 tatcttacggtttgaatgactttaacct 28632913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 133 - 276
Target Start/End: Original strand, 32190647 - 32190790
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttt 232  Q
    ||||||||||||||||||| ||||||||||| ||||| ||| |||| |||  ||||||||| | ||||| |||| || ||||||||    | || |||||    
T  32190647 ccgcaccaaccgatccaactcaaactgcatttgtttggtttggtttagtttggattttattttaaaagttaaccaaatcaaaccaaacctcatgtttttt 32190746  T
Q  233 tatcttacgattcggatgacttttaccttcaaaaccaaaccaaa 276  Q
    |||| |||| ||| ||||||||||| | |||||| | |||||||    
T  32190747 tatcatacggttcagatgacttttagcctcaaaatcgaaccaaa 32190790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 210
Target Start/End: Complemental strand, 14564595 - 14564456
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct--nnnnnnnccgcaccaaccgatccaacccaaactgcattggtttga 170  Q
    ||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||         ||||| |||||||||||||||||||  |||| ||| ||    
T  14564595 gttttagttttttaacttgattttaatgttcgaaacaaaaaattgtattgtctagtaaaaaaccgcaacaaccgatccaacccaaaccacatttgttcga 14564496  T
Q  171 tttagtttcgttcagattttattcttaaagtcaaccgaac 210  Q
    |||  ||| |||| ||||| |||   ||||||||||||||    
T  14564495 tttgatttagttcggatttgatttaaaaagtcaaccgaac 14564456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 278
Target Start/End: Complemental strand, 20500718 - 20500525
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgatt 172  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||  || ||||||       ||||||||||| ||||||||||||||  |||| ||||       
T  20500718 gttttagatttttaacttgattttaatgttgtaaacaaaaaaacgtgtcgtctcaaaaaaccgcaccaaccaatccaacccaaactatattgatttg--- 20500622  T
Q  173 tagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaac 272  Q
           |||  ||||||||  || |||||||| ||  ||||||||  | | |||||||||||||| || ||||  ||||||||||| ||||||||||||    
T  20500621 -------gtttggattttat--tttaagtcaactgagtcaaaccaaactacttgcttttttatcttgcggttcgagtgacttttaccctcaaaaccaaac 20500531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 257
Target Start/End: Original strand, 892256 - 892442
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttga- 170  Q
    |||||| |||| ||| | ||||||||||||| |||||||||||| ||| ||||        ||||| ||||| |||||||||||||  |||||||||       
T  892256 gttttaactttctaactcgattttaatgttgaaaacaaaaaattatattgtctcgaaaaaaccgcatcaaccaatccaacccaaaccacattggtttttg 892355  T
Q  171 tttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgactttta 257  Q
    ||| |||| |||| ||| ||||| | ||||| ||||||||||||||||   || || |||||||| || || |||||||||||||||    
T  892356 tttggtttagttcggatgttattttaaaagttaaccgaaccaaaccaaaccgcatgtttttttattttgcggttcggatgactttta 892442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 7170074 - 7170159
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    |||||||||||||||||| ||||||  |||||||||||||| |||| |||   |||||||| | |||||||||||| |||| ||||    
T  7170074 ccgcaccaaccgatccaatccaaaccacattggtttgatttggtttggtttgaattttattttaaaagtcaaccgatccaatccaa 7170159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 278
Target Start/End: Complemental strand, 29048282 - 29048087
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgatt 172  Q
    |||||| |||||||| |||||||||||||||||||||||||| | ||| ||||       ||||||||||| ||| || |||||  ||||||            
T  29048282 gttttaactttttaatttgattttaatgttggaaacaaaaaaatttattgtctaaaaaaaccgcaccaaccaatctaatccaaatcgcattg-------- 29048191  T
Q  173 tagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaac 272  Q
      |||| |||| ||||||||| | |||||||||||||||||||||| | ||   | |||||| |||| | || |||||||||||| | | |||||| |||    
T  29048190 --gtttagttcggattttattttaaaagtcaaccgaaccaaaccaaatcgcacacctttttaccttatggtttggatgacttttaaccttaaaaccgaac 29048093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 4563014 - 4562966
Alignment:
Q  77 tagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    ||||||||||| | |||||||||||||||||||||||||||||| ||||    
T  4563014 tagctttttaactcgattttaatgttggaaacaaaaaattgtattgtct 4562966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 285
Target Start/End: Original strand, 31945458 - 31945553
Alignment:
Q  185 gattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaaccaaaccg 284  Q
    ||||||||| | |||||||||||||||||| |     || | ||||||||||||||| ||||||||||||||| | |||||||| || ||||||| ||||    
T  31945458 gattttattttaaaagtcaaccgaaccaaaac-----gcatacttttttatcttacggttcggatgacttttaacctcaaaaccgaaacaaaccacaccg 31945552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 31945351 - 31945392
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  31945351 gttttagctttttaatttgattttaatattggaaacaaaaaa 31945392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 14940591 - 14940699
Alignment:
Q  175 gtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaacca 274  Q
    |||| |||| |||||||||   ||||||||||||||||||||||  ||| || ||||||||||| || ||||||| || |||| | | |||||| || ||    
T  14940591 gtttggttcggattttatttaaaaagtcaaccgaaccaaaccaaactgcatgtttttttatcttgcggttcggataacctttaaccttaaaaccgaatca 14940690  T
Q  275 aaccaaacc 283  Q
    |||| ||||    
T  14940691 aaccgaacc 14940699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 13532206 - 13532251
Alignment:
Q  79 gctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||    
T  13532206 gctttttaacttgattttaatgttgggaa-aaaaaattgtatcgtct 13532251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 26645456 - 26645506
Alignment:
Q  228 ttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||| |||||| ||||||||||||||| | |||||||||||| |||||    
T  26645456 ttttttaccttacggttcggatgacttttaacctcaaaaccaaactaaacc 26645506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 26751422 - 26751472
Alignment:
Q  228 ttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||| |||||| ||||||||||||||| | |||||||||||| |||||    
T  26751422 ttttttaccttacggttcggatgacttttaacctcaaaaccaaactaaacc 26751472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 6266945 - 6266864
Alignment:
Q  197 aaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||||||| ||||||||||   || || |||||||| ||||| ||||||||||| ||| | ||||||||  ||||||||    
T  6266945 aaagtcaaccgtaccaaaccaaaccgcatgtttttttattttacggttcggatgactattaacctcaaaaccgtaccaaacc 6266864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 9686208 - 9686163
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgt 118  Q
    ||||||||||||||| |||||||||| |||||||| |||| |||||    
T  9686208 gttttagctttttaatttgattttaacgttggaaaaaaaatattgt 9686163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 12108483 - 12108524
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    |||||| |||||||| || |||||||||||||||||||||||    
T  12108483 gttttacctttttaacttaattttaatgttggaaacaaaaaa 12108524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 24644940 - 24644976
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttg 169  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  24644940 ccgcacccaccgatccaatccaaactgcattggtttg 24644976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 35040318 - 35040354
Alignment:
Q  269 aaaccaaaccaaaccgcaccgggaacacccctaggtc 305  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  35040318 aaaccgaaccaaaccgcaccgcgaacacccctaggtc 35040354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 278
Target Start/End: Complemental strand, 40436537 - 40436396
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtg-ctttt 231  Q
    ||||||||||||||||||||||||| |||||||||||     |||  ||||| |||||||| ||||||||||||||||||||||||   || ||  ||||    
T  40436537 ccgcaccaaccgatccaacccaaaccgcattggtttg-----gttcggttcaaattttatttttaaagtcaaccgaaccaaaccaaacggcatgtttttt 40436443  T
Q  232 ttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||| | ||| |||| ||||||||| |||||||| |||||||||    
T  40436442 ttatcttgcaatttggatcacttttaccctcaaaaccgaaccaaacc 40436396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 276
Target Start/End: Original strand, 31497583 - 31497729
Alignment:
Q  140 aaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaacc----------aaaccaacttgcgtgctt 229  Q
    |||| ||||||||||||| ||||| ||||| ||| |||| |||  ||| ||||| |||||||||||||||||          |||||||   ||||||||    
T  31497583 aaccaatccaacccaaaccgcattagtttggtttggtttggtttggatgttatttttaaagtcaaccgaaccaaaccaaaccaaaccaaaccgcgtgctt 31497682  T
Q  230 ttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaa 276  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||    
T  31497683 ttttatcttgcggttcggatgacttttaccttcaaaaccaaaccaaa 31497729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 278
Target Start/End: Original strand, 15272230 - 15272428
Alignment:
Q  81 tttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttc 179  Q
    ||||||| | |||||| |||||||||| ||||||||| |||||||        ||||||||||||||||||||||||||||||| ||||| ||| ||||     
T  15272230 tttttaactcgattttgatgttggaaataaaaaattggatcgtctcaaaaaaaccgcaccaaccgatccaacccaaactgcatttgtttggtttggtttg 15272329  T
Q  180 gttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    |||| |||| |  |   |||||||||  |||||||||||   ||||||||||||||| | |  |||||||||||||||   ||||||||  ||||||||    
T  15272330 gttcggattgtgcttgaaaagtcaactaaaccaaaccaaaccgcgtgcttttttatcctgccgttcggatgacttttaatctcaaaaccgtaccaaacc 15272428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 278
Target Start/End: Original strand, 15452599 - 15452797
Alignment:
Q  81 tttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttc 179  Q
    ||||||| | |||||| |||||||||| ||||||||| |||||||        ||||||||||||||||||||||||||||||| ||||| ||| ||||     
T  15452599 tttttaactcgattttgatgttggaaataaaaaattggatcgtctcaaaaaaaccgcaccaaccgatccaacccaaactgcatttgtttggtttggtttg 15452698  T
Q  180 gttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    |||| |||| |  |   |||||||||  |||||||||||   ||||||||||||||| | |  |||||||||||||||   ||||||||  ||||||||    
T  15452699 gttcggattgtgcttgaaaagtcaactaaaccaaaccaaaccgcgtgcttttttatcctgccgttcggatgacttttaatctcaaaaccgtaccaaacc 15452797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 278
Target Start/End: Complemental strand, 11219053 - 11218910
Alignment:
Q  135 gcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgctttttta 234  Q
    |||| ||| |||| || |||||||||||||||||| |||  |||  |||||| |||||| | |||||||||| ||||||||||| | || | ||| ||||    
T  11219053 gcacaaacagatcaaatccaaactgcattggtttggtttgatttgattcagactttattttaaaagtcaaccaaaccaaaccaaatcgcatacttattta 11218954  T
Q  235 tcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    |||| || ||||||||||||||| | |||||| | |||||||||    
T  11218953 tcttgcgtttcggatgacttttagcctcaaaatcgaaccaaacc 11218910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 24682070 - 24682209
Alignment:
Q  135 gcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgctttttta 234  Q
    ||||||||| ||| || |||||||||||| ||||| ||| |||| |||| ||||||||| | |||||||| |||| ||||||||  ||| | ||| ||||    
T  24682070 gcaccaaccaatctaatccaaactgcattagtttggtttggtttggttc-gattttattttaaaagtcaatcgaatcaaaccaaactgcatacttattta 24682168  T
Q  235 tcttacgattcggatgacttttaccttcaaaaccaaaccaa 275  Q
    |||| || ||||||||| ||||| | |||||||| ||||||    
T  24682169 tcttgcggttcggatgaattttagcctcaaaaccgaaccaa 24682209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 133 - 277
Target Start/End: Complemental strand, 33566062 - 33565916
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgc--ttt 230  Q
    |||||||||||||||||| | |||| ||| ||||||| ||| |||| ||||  |||||||| |  |||||||||||||||||||||   || | |  |||    
T  33566062 ccgcaccaaccgatccaatcaaaaccgcactggtttggtttggtttggttcgaattttattttagaagtcaaccgaaccaaaccaaaccgcatacttttt 33565963  T
Q  231 tttatcttacgattcggatgacttttaccttcaaaaccaaaccaaac 277  Q
    |||||||| || |||  |||||||||| | |||||||||||||||||    
T  33565962 tttatcttgcggttcaaatgacttttagcctcaaaaccaaaccaaac 33565916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 6591394 - 6591248
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct-nnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    ||||||||||||||| | |||||||| |||||||| |||||||||||| ||||        ||| ||||||| ||||||| |||||  ||||| |||| |    
T  6591394 gttttagctttttaactcgattttaaagttggaaataaaaaattgtattgtctcaaaaaaaccgtaccaaccaatccaactcaaaccacattgttttggt 6591295  T
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    || |||| |||   |||||||| | ||||||||||||||||||||||    
T  6591294 ttggtttggttagaattttattttaaaagtcaaccgaaccaaaccaa 6591248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 9012760 - 9012855
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttg 169  Q
    ||||||| ||||||| ||||||||| ||  |||||||||||||| ||| ||||       ||||||||||||||||||||||||| |||||||||||    
T  9012760 gttttagttttttaacttgattttactgc-ggaaacaaaaaattatattgtctcaaaaaaccgcaccaaccgatccaacccaaaccgcattggtttg 9012855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 276
Target Start/End: Complemental strand, 4785398 - 4785198
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgatt 172  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||  || | ||       |||||| |||| ||||||  ||||| ||||||||||| ||    
T  4785398 gttttaactttttaatttgattttaatgttggaaaaaaaaaatt--attgcctaaaaaa-ccgcactaaccaatccaattcaaaccgcattggtttggtt 4785302  T
Q  173 tagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaac 272  Q
    | |||| ||||| ||| |||| | |||||||||||||||||| |||   || | |||||||||  | || |||| ||||||||||   |||||||| |||    
T  4785301 tggtttggttcatattatattttaaaagtcaaccgaaccaaatcaaaccgcatacttttttattctgcggttcgtatgacttttaatctcaaaaccgaac 4785202  T
Q  273 caaa 276  Q
    ||||    
T  4785201 caaa 4785198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 8036079 - 8036013
Alignment:
Q  202 caaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaacc 268  Q
    |||||||||||||||||  ||| |||||||||||||| || ||| |||||||||||||||| |||||    
T  8036079 caaccgaaccaaaccaaactgcatgcttttttatcttgcggttcagatgacttttaccttctaaacc 8036013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 278
Target Start/End: Complemental strand, 44336877 - 44336732
Alignment:
Q  133 ccgcaccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtg-ctttt 231  Q
    |||||||||  ||||||||| ||||  ||| |||||| ||| |||| |||| |||| |||| | ||||||||||||||||||||||   || ||  ||||    
T  44336877 ccgcaccaattgatccaacc-aaaccacataggtttggtttggtttggttcggattgtattttaaaagtcaaccgaaccaaaccaaaccgcatgtttttt 44336779  T
Q  232 ttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||| || |||||||||||||||   |||||||| |||||||||    
T  44336778 ttatcttgcggttcggatgacttttaaactcaaaaccgaaccaaacc 44336732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 6617089 - 6616943
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct-nnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    ||||||||||||||| | |||||||| ||||||||||||||||||||| ||||        ||| ||||||| |||| || |||||  ||||| |||| |    
T  6617089 gttttagctttttaactcgattttaaagttggaaacaaaaaattgtattgtctcaaaaaaaccgtaccaaccaatcctactcaaaccacattgttttggt 6616990  T
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    || |||| |||   |||||||| | ||||||||||||| ||||||||    
T  6616989 ttggtttggttagaattttattttaaaagtcaaccgaaacaaaccaa 6616943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 279
Target Start/End: Original strand, 7428449 - 7428556
Alignment:
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaa 271  Q
    ||||||| ||||  |||||||| | ||||||||||||||||||||||   || ||| |||||||| | || ||| ||||||||||| | ||| |||| ||    
T  7428449 ttagtttggttcgaattttattttaaaagtcaaccgaaccaaaccaaaccgcatgcatttttatcatgcggttcagatgacttttaacctcataaccgaa 7428548  T
Q  272 ccaaacca 279  Q
    ||||||||    
T  7428549 ccaaacca 7428556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 28073125 - 28073168
Alignment:
Q  82 ttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    |||||| ||||||||||||||| |||||||||||||||||||||    
T  28073125 ttttaacttgattttaatgttgaaaacaaaaaattgtatcgtct 28073168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 12074109 - 12074161
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct 125  Q
    ||||| || |||||| || ||||||||||||||||||||||||||||| ||||    
T  12074109 gtttttgcattttaaattaattttaatgttggaaacaaaaaattgtattgtct 12074161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 10661191 - 10661114
Alignment:
Q  201 tcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||||||||||||||||   || |||||||||||||  || || ||||||||||||   |||||||| |||||||||    
T  10661191 tcaaccgaaccaaaccaaaccgcatgcttttttatctcgcggtttggatgacttttatgctcaaaaccgaaccaaacc 10661114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 33068303 - 33068226
Alignment:
Q  201 tcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacc 278  Q
    ||||| ||||||||||||   || |||||||||||||| || || ||||||||||||   |||||||| |||||||||    
T  33068303 tcaactgaaccaaaccaaaccgcatgcttttttatcttgcggtttggatgacttttatgctcaaaaccgaaccaaacc 33068226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 38926351 - 38926392
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaa 114  Q
    |||||| |||||||| ||||||||||||||| ||||||||||    
T  38926351 gttttacctttttaacttgattttaatgttgaaaacaaaaaa 38926392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 3129485 - 3129529
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattg 117  Q
    ||||||| ||||||| | ||||||||||||| |||||||||||||    
T  3129485 gttttagatttttaactcgattttaatgttgaaaacaaaaaattg 3129529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 14185804 - 14185840
Alignment:
Q  83 tttaagttgattttaatgttggaaacaaaaaattgta 119  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  14185804 tttaacttgattttaatgttcgaaacaaaaaattgta 14185840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 19539475 - 19539400
Alignment:
Q  136 caccaaccgatccaacccaaactgcattggtttgatttagtttcgttcagattttattcttaaagtcaaccgaaccaaacc 216  Q
    |||||||||||||||||||| | |||||||||||     |||| |||| ||||||||| | ||||||||||  ||||||||    
T  19539475 caccaaccgatccaacccaatccgcattggtttg-----gtttggttcggattttattttaaaagtcaaccataccaaacc 19539400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 36340738 - 36340818
Alignment:
Q  139 caaccgatccaacccaaactgcattggtttgatttagtttcgtt-----cagattttattcttaaagtcaaccgaaccaaa 214  Q
    |||||||||||| ||||| |||||| ||||||||| |||| |||     | ||||||||| | ||||||||||||||||||    
T  36340738 caaccgatccaatccaaattgcatttgtttgatttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaa 36340818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 277
Target Start/End: Complemental strand, 26025 - 25825
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaacc-gatccaacccaaactgcattggtttga 170  Q
    |||||| |||||||| | ||||||||||||| |||||||||||||||| ||||        || |||||||| |||||||  ||||| |||||| ||||     
T  26025 gttttacctttttaactcgattttaatgttgaaaacaaaaaattgtattgtctcgaaaaaaccacaccaacccgatccaattcaaaccgcattgatttgg 25926  T
Q  171 tttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaa 270  Q
    ||| |||| |     |||||||| | ||||||||||||||||||||||  ||| || |||||||||||||| ||||||||||||||| | | |||||| |    
T  25925 tttggtttgg-----attttattttaaaagtcaaccgaaccaaaccaaactgcatg-ttttttatcttacggttcggatgacttttaaccttaaaaccga 25832  T
Q  271 accaaac 277  Q
    |||||||    
T  25831 accaaac 25825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 278
Target Start/End: Complemental strand, 14682 - 14483
Alignment:
Q  74 ttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtctnnnnnnn-ccgcaccaaccgatccaacccaaactgcattggtttgatt 172  Q
    ||||| |||||||| | ||||||||||||| |||||||||||||||| ||||        |||||||||| ||||||| | |||| ||||| |||||       
T  14682 ttttacctttttaactcgattttaatgttgcaaacaaaaaattgtattgtctcaaaaaaaccgcaccaactgatccaaac-aaaccgcatttgtttg--- 14587  T
Q  173 tagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgcttttttatcttacgattcggatgacttttaccttcaaaaccaaac 272  Q
      |||| |||| |||| |  | | | ||||||| |||||||||||| | || |||||||||||||| || ||||||||||||||| |||||||||  |||    
T  14586 --gtttggttcggattgtgctttaagagtcaactgaaccaaaccaaatcgcatgcttttttatcttgcggttcggatgacttttaacttcaaaactgaac 14489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 6407 - 6261
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcgtct-nnnnnnnccgcaccaaccgatccaacccaaactgcattggtttgat 171  Q
    ||||||||||||||| | |||||||| ||||||||||||||||||||| ||||        ||| ||||||| |||| || |||||  ||||| |||| |    
T  6407 gttttagctttttaactcgattttaaagttggaaacaaaaaattgtattgtctcaaaaaaaccgtaccaaccaatcctactcaaaccacattgttttggt 6308  T
Q  172 ttagtttcgttcagattttattcttaaagtcaaccgaaccaaaccaa 218  Q
    || |||| |||   |||||||| | ||||||||||||| ||||||||    
T  6307 ttggtttggttagaattttattttaaaagtcaaccgaatcaaaccaa 6261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 6163 - 6041
Alignment:
Q  73 gttttagctttttaagttgattttaatgttggaaacaaaaaattgtatcg--tctnnnnnnnccgcaccaaccgatccaacccaaactgcattggtttga 170  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||| || |  ||        | |||| |||||||||||||||||| |||||||||||     
T  6163 gttttagctttttaatttgattttgatgttgtaaacaaaaaattgaattgtttcgataacaactgcacaaaccgatccaacccaaaccgcattggtttgg 6064  T
Q  171 tttagtttcgttcagattttatt 193  Q
    ||| |||| ||||  ||||||||    
T  6063 tttggtttggttcgaattttatt 6041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 1169 - 1118
Alignment:
Q  228 ttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacca 279  Q
    ||||||||||| || ||||||||||||||| | |||||||| ||||||||||    
T  1169 ttttttatcttgcggttcggatgacttttagcctcaaaaccgaaccaaacca 1118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 7738 - 7687
Alignment:
Q  228 ttttttatcttacgattcggatgacttttaccttcaaaaccaaaccaaacca 279  Q
    ||||||||||| || ||||||||||||||| | |||||||| ||||||||||    
T  7738 ttttttatcttgcggttcggatgacttttagcctcaaaaccgaaccaaacca 7687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 62504 - 62387
Alignment:
Q  139 caaccgatccaacccaaactgcattggtttgatttagtttcgtt-----cagattttattcttaaagtcaaccgaaccaaaccaacttgcgtgctttttt 233  Q
    |||||||||||| ||||| |||||| ||||||||| |||| |||     | ||||||||| | |||||||||||||||||| |||   || | |||||||    
T  62504 caaccgatccaatccaaattgcatttgtttgatttggtttggtttggttcggattttattttaaaagtcaaccgaaccaaatcaaaccgcatactttttt 62405  T
Q  234 atcttacgattcggatga 251  Q
    | |||||| ||| |||||    
T  62404 agcttacggttcagatga 62387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University