View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20284_low_6 (Length: 338)
Name: NF20284_low_6
Description: NF20284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20284_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 40058310 - 40058625
Alignment:
| Q |
18 |
aatctattcatgaaataagaaaaaattattacactgtttcttcccaaaaaagagtagagttattagcatttgacatcaaacatataaatatctccatgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40058310 |
aatctattcatgaaataagaaaaaattattacactgtttcatcccaaaaaagagtagagttattagcatttgacatcaaacatataaatctctccatgat |
40058409 |
T |
|
| Q |
118 |
ttttctgtccatcctctagtgatcaagaccattttcccgaggagttcctctaatttgtttatgcctaactattccactatccttgcaaatttgattaaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40058410 |
ttttctgtccatcctctagtgatcaagacaattttcccgaggagttcctctaatttgtttatgcctaactattccactatccttgcaaatttgattaaac |
40058509 |
T |
|
| Q |
218 |
tctccagcataagaaataccttgcttcaactatgaaagaaactcttcttttcccaaatatacaatgttcaaaaaattcaagatcttcaatgttgtccttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40058510 |
tctccagcataagaaataccttgcttcaactatgaaagaaactcttcttttcccaaatatacaatgttcaaaaaattcaagatcttcaatgttgtccttc |
40058609 |
T |
|
| Q |
318 |
ctgaagagcctatgct |
333 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
40058610 |
ctgaagagcctttgct |
40058625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University