View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20284_low_8 (Length: 262)
Name: NF20284_low_8
Description: NF20284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20284_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 28536698 - 28536934
Alignment:
| Q |
13 |
tgaagaataaaagataagaaggtctcaatcatagatcaaacacaataaatttagcaacaataacagcttgtaatgataagaatcaacattttatggaatt |
112 |
Q |
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| T |
28536698 |
tgaagaataaaagataagaaggtctcaatcatagatcaaacacaacaagtttagcaacaataacggcttgtaataataagaatcaccattttacggaatt |
28536797 |
T |
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| Q |
113 |
taacaaacaatgtggcaattgcagcaatgtgaacaaataatagaaccataataatgca------gtgatccaaaaaacaagatcattccacaaacttaac |
206 |
Q |
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| T |
28536798 |
taacaaacaatgtggcaattgcagcaaggtgaacaaactagtgatccaaaaaaaaaaaacataggagattgatacaacaagatcattccacaaacttaac |
28536897 |
T |
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| Q |
207 |
ttttttaatctgttagtctgaatttctaacttcatta |
243 |
Q |
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| T |
28536898 |
tattttaatctgttattctgaatttctaacttgatta |
28536934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 35686587 - 35686724
Alignment:
| Q |
13 |
tgaagaataaaagataagaaggtctcaatcatagatcaaacacaataaatttagcaacaataacagcttgtaatgataagaatcaacattttatggaatt |
112 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||| |||||||||| ||||||| || ||| |
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| T |
35686587 |
tgaagaataaaagataaaaaggtctcaattatagatcaaacacaaaaagtttagcaacaataacggcttgtaataataagaatcaccattttacgggatt |
35686686 |
T |
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| Q |
113 |
taacaaacaatgtggcaattgcagcaatgtgaacaaat |
150 |
Q |
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| T |
35686687 |
taacaaacaatgtggcaattgcagtaaggtaaacaaat |
35686724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 35686778 - 35686839
Alignment:
| Q |
182 |
aacaagatcattccacaaacttaacttttttaatctgttagtctgaatttctaacttcatta |
243 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
35686778 |
aacaagatcatttcacaaacataacttttttaatctgttagtctgaatttctaacttgatta |
35686839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 7722965 - 7723026
Alignment:
| Q |
182 |
aacaagatcattccacaaacttaacttttttaatctgttagtctgaatttctaacttcatta |
243 |
Q |
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| T |
7722965 |
aacaagatcattccacaaacttaacttttttagtctgttagtctgaatttctaacttgatta |
7723026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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