View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20284_low_9 (Length: 251)
Name: NF20284_low_9
Description: NF20284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20284_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 39128581 - 39128347
Alignment:
| Q |
1 |
gttgacacaaagcataaacacagttcaaaatgatatacaccatggaaatagacatgtagtaattacaaaacaagggtnnnnnnnnnnnnnnntcaaacat |
100 |
Q |
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| T |
39128581 |
gttgacacaaagcataaacacagttcaaaatgataaacaccatggaaatagacatgtagtaattacaaaacaagggtaaaaaaaacaaaaaatcaaacat |
39128482 |
T |
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| Q |
101 |
aaacacagtgatactattgtattgacacaaagcataaaatggttttgaaaccctctcactaacaaaaataaaacaaacatttactactaccattaacaaa |
200 |
Q |
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| T |
39128481 |
aaacaaagtgatactattgtattgacacagagcataaaatggttttgaaaccctctcactaacaaaaataaaacaaacatttactactaccattaacaaa |
39128382 |
T |
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| Q |
201 |
atatataggtaaaagataagaaatgtggttctttt |
235 |
Q |
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| T |
39128381 |
atatataggtaaaagataagaaatgtgattctttt |
39128347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 39128609 - 39128564
Alignment:
| Q |
93 |
tcaaacataaacacagtgatactattgtattgacacaaagcataaa |
138 |
Q |
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| T |
39128609 |
tcaaacataaacacagtgatactattgtgttgacacaaagcataaa |
39128564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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