View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20285_high_3 (Length: 362)
Name: NF20285_high_3
Description: NF20285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20285_high_3 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 11780656 - 11780324
Alignment:
| Q |
20 |
ggggggcttccacttcggccaatggaagtacttggacttgggttccggttccgattacttcgacaatcagcacttctcagagagctccggttactactgc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |
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| T |
11780656 |
ggggggcttccacttcggccaatggaagtacttggacttaggttccggttccgattacttcgacagtcaccacttctcagagagttccggttactactgc |
11780557 |
T |
|
| Q |
120 |
cccttcaacactagctccgccttctcaggctattccggaccctattattgctagctcacacatggggccggttgttaattctacatcatcagttgttact |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
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| T |
11780556 |
cccttcaacactagctccgccttctcaggctattccggaccctattattgctagctcacacatggggtcggttgttaattctacttcagcagttgttact |
11780457 |
T |
|
| Q |
220 |
tctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgc |
319 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| |
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| T |
11780456 |
tctcatatgacggtccctatgcccaggacatcattgtcgtcaacatctttcagctttccactacataacgtgtttgacagcgtttctagtgaggagctgc |
11780357 |
T |
|
| Q |
320 |
tactagctacgccagtgtttgaaattgtttccc |
352 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
11780356 |
tactagctacgccagtgtttgaaattgtttccc |
11780324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 17159082 - 17158744
Alignment:
| Q |
13 |
cacagatggggggcttccacttcggccaatggaagtacttggacttgggttccggttccgattacttcgacaatcagcacttctcagagagctccggtta |
112 |
Q |
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|||| |||||||||||| |||| ||||||||| ||||| | ||||||||||||||||||||||||||| ||| ||| ||||| |||||||| || ||||| |
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| T |
17159082 |
cacatatggggggcttcaactttggccaatggcagtacctcgacttgggttccggttccgattacttcaacagtcaccacttttcagagagttctggtta |
17158983 |
T |
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| Q |
113 |
ctactgccccttcaacactagctccgccttctcaggctattccggaccctattattgctagctcacacatggggccggttgttaattctacatcatcagt |
212 |
Q |
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||||| ||||||||||||| |||| | |||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||| ||| |||| |
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| T |
17158982 |
ctactaccccttcaacactggctctgtcttctcaggctattccggtccgtactattgctagctcacacatggggccggttgttacttctacttcagcagt |
17158883 |
T |
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| Q |
213 |
tgttacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgag |
312 |
Q |
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|||||||||||| |||| ||||||||||| | ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17158882 |
tgttacttctcagttgacagtccctatgcccaagacgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaa |
17158783 |
T |
|
| Q |
313 |
gagctgctactagctacgccagtgtttgaaattgtttcc |
351 |
Q |
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|||||| ||| ||||||||||||||||||||||||||| |
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| T |
17158782 |
aagctgccactcgctacgccagtgtttgaaattgtttcc |
17158744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 12101531 - 12101867
Alignment:
| Q |
16 |
agatgggg-ggcttccacttcggccaatggaagtacttggacttgggttccggttccgattacttcgacaatcagcacttctcagagagctccggttact |
114 |
Q |
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|||||||| |||||||||||| |||||||| ||||| ||||||||||||||| ||| ||||||||||| | ||| |||| ||||||||| || ||| ||| |
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| T |
12101531 |
agatggggaggcttccacttcagccaatggcagtacctggacttgggttccgattctgattacttcgatagtcaccactactcagagagttctggtcact |
12101630 |
T |
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| Q |
115 |
actgccccttcaacactagctccgccttctcaggctattccggaccctattattgctagctcacacatggggccggttgttaattctacatcatcagttg |
214 |
Q |
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|||||||||||||||| |||| |||||||| ||||||||||| ||||| || |||||| ||||||| |||||||| | ||||| ||| |||||| |
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| T |
12101631 |
tctgccccttcaacactggctcagccttctctggctattccggccccta------cttgctcacccatggggtcggttgttcactctacttcaacagttg |
12101724 |
T |
|
| Q |
215 |
ttacttctcatatgacg-----gtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagt |
309 |
Q |
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|||||| || |||| | || ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
12101725 |
atacttcacagatgatgaaggaatcactatgcctatgacgtcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagc |
12101824 |
T |
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| Q |
310 |
gaggagctgctactagctacgccagtgtttgaaattgtttccc |
352 |
Q |
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|||||||| | || ||| || | ||||||||||||| |||||| |
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| T |
12101825 |
gaggagctaccacaagcaacacgagtgtttgaaattatttccc |
12101867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 14977301 - 14977410
Alignment:
| Q |
20 |
ggggggcttccacttcggccaatggaagtacttggacttgggttccggttccgattacttcgacaatcagcacttctcagagagctccggttactactgc |
119 |
Q |
| |
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|||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| | || |||||||||| ||| |||||| |||| |
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| T |
14977301 |
ggggagcttccacttcagccaatggcagtacttgtacttgggttccggttccgattacttcgacaattactacctctcagagagttccagttacttctgc |
14977400 |
T |
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| Q |
120 |
cccttcaaca |
129 |
Q |
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| T |
14977401 |
ctctgcaaca |
14977410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 341
Target Start/End: Original strand, 14977470 - 14977595
Alignment:
| Q |
216 |
tacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggag |
315 |
Q |
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||||||||| |||| ||||||| |||| ||||| || ||||| ||||||||||| ||||| ||| | || ||| ||||||| | |||||||||||| || |
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| T |
14977470 |
tacttctcagatgatggtccctgtgcccaggacgtctttgtcatcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaag |
14977569 |
T |
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| Q |
316 |
ctgctactagctacgccagtgtttga |
341 |
Q |
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||| | |||||| |||||| |||| |
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| T |
14977570 |
ttgccagaagctacaccagtgattga |
14977595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 11776713 - 11776668
Alignment:
| Q |
25 |
gcttccacttcggccaatggaagtacttggacttgggttccggttc |
70 |
Q |
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||||||| ||||||||||||||| ||||||| ||||||||||||| |
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| T |
11776713 |
gcttccatttcggccaatggaagcgcttggacgtgggttccggttc |
11776668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 140525 - 140467
Alignment:
| Q |
22 |
ggggcttccacttcggccaatggaagtacttggacttgggttccggttccgattacttc |
80 |
Q |
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|||||||| ||||||||||||||| |||||||||||||| | |||||||| |||||||| |
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| T |
140525 |
ggggcttcaacttcggccaatggaggtacttggacttggttcccggttcctattacttc |
140467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 19069709 - 19069624
Alignment:
| Q |
253 |
ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtt |
338 |
Q |
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|||||||||| ||||||||||||||| | || || | ||||||||| |||||| | ||||||||| || |||||||||||||| |
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| T |
19069709 |
ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgtt |
19069624 |
T |
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