View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20285_high_5 (Length: 347)
Name: NF20285_high_5
Description: NF20285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20285_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 52925802 - 52926131
Alignment:
| Q |
1 |
gcacagcctccaaaagtttctcataaacttgtctagcagtgagatcctccacctgaaatgatggtgaaaattagcgttagtatatatgtttgttgagaaa |
100 |
Q |
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| T |
52925802 |
gcacagcctccaaaagtttctcataaacttgtctagcagtgagatcctccacctgaaatgatggtgaaaattagcattagtatatatgtttgttgagaaa |
52925901 |
T |
|
| Q |
101 |
tacttactacttggttaagttgaagaagacatgactgaccacaagaagctttgacttgttattccatcctctctgaagagtcatttgactcaatcttaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52925902 |
tacttactacttggttaagttgaagaagacatgactgaccacaagaagctttgacttgttattccatcctctctgaagagtcatttgactcaatcttaaa |
52926001 |
T |
|
| Q |
201 |
cctaaaacctttcccataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtgacacgaacatcatcagcatttactctgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52926002 |
cctaaaacctttcccataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtgacacgaacatcatcagcatttactctgg |
52926101 |
T |
|
| Q |
301 |
tgattgcggagcggtgagcacgatcctcaa |
330 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
52926102 |
tgattgcggagcggtgagcacgatcttcaa |
52926131 |
T |
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