View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20285_low_1 (Length: 257)
Name: NF20285_low_1
Description: NF20285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20285_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 48107580 - 48107811
Alignment:
| Q |
11 |
cataggttagttacctgaaaaagtgtatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatg |
110 |
Q |
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| T |
48107580 |
cataagttagttacctgaaaaagtatatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatg |
48107679 |
T |
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| Q |
111 |
aatctatttccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttattataattc |
210 |
Q |
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| T |
48107680 |
aatctatttccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttactataattc |
48107779 |
T |
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| Q |
211 |
cccctccatattgtgctctttgaggttctttc |
242 |
Q |
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| T |
48107780 |
cccctccatattgtgctctttgaggttctttc |
48107811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 48063919 - 48064139
Alignment:
| Q |
19 |
agttacctgaaaaagtgtatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatctatt |
118 |
Q |
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| T |
48063919 |
agttaccagaaaacatgtatatcattcctttcttcagttggaccttctgtgagaaaccatccaatgtttgtcttctgttgctagcaacaatgaatctatt |
48064018 |
T |
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| Q |
119 |
tccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttattataattccccctcca |
218 |
Q |
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| T |
48064019 |
ttcatcatttgatattcgttcctcgattgttccatttccaaacactctccaaccctttatgttgtgatcaaatcctggatttactataatgcctcctcca |
48064118 |
T |
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| Q |
219 |
tattgtgctctttgaggttct |
239 |
Q |
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| T |
48064119 |
tattgtgccctcttaggttct |
48064139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 48101173 - 48101392
Alignment:
| Q |
20 |
gttacctgaaaaagtgtatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatctattt |
119 |
Q |
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|||||| |||||||| ||||||| |||||||| || || ||| | |||||||||||||| |||| ||||||||| |||||||||||||||||||||||| |
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| T |
48101173 |
gttaccagaaaaagtatatatcattcctttcttcagttggaccttctgtgaaaaactatccaatggttgtgttctgttgctggcaacaatgaatctattt |
48101272 |
T |
|
| Q |
120 |
ccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttattataattccccctccat |
219 |
Q |
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| T |
48101273 |
ccgttgtttgatactcgttcctcgattgttccatttccaaacactttccagccatttatgttgtgatcaaatcctggatttactgtaatgcctcccccat |
48101372 |
T |
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| Q |
220 |
attgtgctctttgaggttct |
239 |
Q |
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| T |
48101373 |
attgtgccctcttaggttct |
48101392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 48068576 - 48068795
Alignment:
| Q |
20 |
gttacctgaaaaagtgtatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatctattt |
119 |
Q |
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|||||| |||||| | ||||||| | ||||||| || || || ||||||| ||||||||||||| ||||||||| |||||| ||||||| ||| ||||| |
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| T |
48068576 |
gttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaataaatgtattt |
48068675 |
T |
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| Q |
120 |
ccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttattataattccccctccat |
219 |
Q |
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| T |
48068676 |
ccatcatttgatgttcgttccttgattgttccatgctcaaacaccgtccaatccttaatgttgtgatcaaatcctggatttactataatgccacctccat |
48068775 |
T |
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| Q |
220 |
attgtgctctttgaggttct |
239 |
Q |
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|||||||||| ||||||||| |
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| T |
48068776 |
attgtgctctctgaggttct |
48068795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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