View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20286_high_2 (Length: 447)
Name: NF20286_high_2
Description: NF20286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20286_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 40415468 - 40415898
Alignment:
| Q |
1 |
ggaaatgaatgtgattgatcgtaacatgtgtgtcatagtcgtctcggtgttagacattgacaacaaatttaacctgaaatgtcagtgctacttggatata |
100 |
Q |
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| T |
40415468 |
ggaaatgaatgtgattgatcgtaacatgtgtgtcacagtcgtctcggtgttagacattgacaacaaatttaacctgaaatgtcagtgttacttgggtata |
40415567 |
T |
|
| Q |
101 |
aactgttgccccacgtaccatagtgagtatggagtcatcaattttggaggcacgctgcctccaaatagagctgtttcttgtgccatcttcaacagaacgt |
200 |
Q |
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| T |
40415568 |
aactgttgccccacgtaccttagtgagtatggagtcatcaattttggaggcacgctgcctccaaatagggctgtttcttgtgccatcttcaacagaacgt |
40415667 |
T |
|
| Q |
201 |
gtctcaaaatttctcctaaatacattcctgaaataagcttttcaaaaatctaagagaaaagggaagg--nnnnnnnnnttcagggatcaattctagatat |
298 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
40415668 |
gtctcacaatttctcctaaatacattcctgaaataagcttttcaaaaatctaagagaaaaaggaaggaaaaaaaaaaattcagggatcaattctagatat |
40415767 |
T |
|
| Q |
299 |
caagataaattatcaatattgaatttagtttataatataccccacttccaggatttgagctttcagcatctaaaatagtgtcaaacgatgttagaggaac |
398 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40415768 |
caagataaattatcaatagtgaatttagtttataatataccccacttccagaatttgagctttcagcatctaaaatagtgtcaaacgatgttagaggaac |
40415867 |
T |
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| Q |
399 |
atgagaggaattgaagtttccccactccatg |
429 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40415868 |
atgagaggaattgaagtttccccactccatg |
40415898 |
T |
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