View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20286_high_3 (Length: 410)
Name: NF20286_high_3
Description: NF20286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20286_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 913374 - 913756
Alignment:
| Q |
18 |
ggttgaatctatttagtaatgataaagactc---ggtaccggtaattgtgtagttaatgagtaatgacactgtctctttattgtattaggttatgtaatt |
114 |
Q |
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| T |
913374 |
ggttgaatctatttagtaatgataaagacacatgggtaccggtaattgtgtagttaatgagtaatgacactgtctttttactgtattaggttatgtaatt |
913473 |
T |
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| Q |
115 |
gaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgttt |
214 |
Q |
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| T |
913474 |
gaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgttt |
913573 |
T |
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| Q |
215 |
ggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttgcatttatctcaccgtgcgttgaatttgctttagtgtttacaaa |
314 |
Q |
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| T |
913574 |
ggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttgcatttatctcaccgtgcgttgaatttgctttagtgtttacaaa |
913673 |
T |
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| Q |
315 |
atgatatgaaagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgttttgtccaatctgaagttcat |
399 |
Q |
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| T |
913674 |
atg--attcaagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgttttgtccaatctgaagttcat |
913756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 889042 - 888681
Alignment:
| Q |
18 |
ggttgaatctatttagtaatgataaagactc---ggtaccggtaattgtgtagttaatgagtaatgacactgtctctttattgtattaggttatgtaatt |
114 |
Q |
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| T |
889042 |
ggttgaatctatttagtaatgataaagacacatgggtaccggtaattgtgtagttaatgagtaatgacactgtctttttactgtattaggttatgtaatt |
888943 |
T |
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| Q |
115 |
gaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgttt |
214 |
Q |
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| T |
888942 |
gaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgttt |
888843 |
T |
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| Q |
215 |
ggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttgcatttatctcaccgtgcgttgaatttgctttagtgtttacaaa |
314 |
Q |
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| T |
888842 |
ggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttgcatttatctcaccgtgcgttgaatttgctttagtgtttacaaa |
888743 |
T |
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| Q |
315 |
atgatatgaaagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgt |
378 |
Q |
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| T |
888742 |
atg--attcaagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgt |
888681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 289 - 378
Target Start/End: Original strand, 1002602 - 1002690
Alignment:
| Q |
289 |
gttgaatttgctttagtgtttacaaaatgatatgaaagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgt |
378 |
Q |
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| T |
1002602 |
gttgaatttgctttagtgtttgcaaaatgatgtgaaaataaatctgtgaaatgaggatcctgagaaggt-aaatgtttggaaattcttgt |
1002690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 1002403 - 1002496
Alignment:
| Q |
200 |
atgaagtgtttgtttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttgcatttatctcaccgtgcgttga |
293 |
Q |
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| T |
1002403 |
atgaagtgcttgtttggtttcttatattataacggtagtaactcgcgtccaatctgatgatcatgttatttgctttcatctcaccgtgcattga |
1002496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 1002155 - 1002189
Alignment:
| Q |
47 |
tcggtaccggtaattgtgtagttaatgagtaatga |
81 |
Q |
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| T |
1002155 |
tcggtaccggtaattgtgtagttaatgagtaatga |
1002189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 913739 - 913786
Alignment:
| Q |
246 |
gtccaatatgaagaacatgttatttgcatttatctcaccgtgcgttga |
293 |
Q |
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| T |
913739 |
gtccaatctgaagttcatgttattcgcatttatctcaccgtgcgttga |
913786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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