View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20286_high_4 (Length: 374)

Name: NF20286_high_4
Description: NF20286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20286_high_4
NF20286_high_4
[»] chr8 (4 HSPs)
chr8 (129-295)||(39721260-39721426)
chr8 (152-262)||(17011713-17011819)
chr8 (152-262)||(17545382-17545488)
chr8 (152-208)||(9618053-9618109)
[»] chr2 (6 HSPs)
chr2 (152-266)||(12324432-12324544)
chr2 (152-268)||(5699924-5700038)
chr2 (180-268)||(16472293-16472379)
chr2 (154-249)||(8485873-8485966)
chr2 (152-290)||(31380501-31380638)
chr2 (152-204)||(11183884-11183936)
[»] chr5 (2 HSPs)
chr5 (152-264)||(15027019-15027128)
chr5 (152-218)||(34272246-34272312)
[»] chr6 (3 HSPs)
chr6 (162-218)||(30062991-30063047)
chr6 (152-266)||(6919325-6919437)
chr6 (152-218)||(10086067-10086133)
[»] chr4 (2 HSPs)
chr4 (152-218)||(23406520-23406586)
chr4 (152-218)||(5198941-5199005)
[»] chr7 (1 HSPs)
chr7 (152-268)||(32471263-32471377)
[»] chr1 (1 HSPs)
chr1 (152-213)||(12900715-12900776)
[»] scaffold0012 (1 HSPs)
scaffold0012 (152-215)||(41912-41975)
[»] chr3 (1 HSPs)
chr3 (152-215)||(14594845-14594908)
[»] scaffold0027 (1 HSPs)
scaffold0027 (156-213)||(16619-16677)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 129 - 295
Target Start/End: Complemental strand, 39721426 - 39721260
Alignment:
Q  129 gttaagaagtgtcctacacacacttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggacacatggctata 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |    
T  39721426 gttaagaagtgtcctacacacacttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggtcgaggtaaatggatacatggctaca 39721327  T
Q  229 gtgatcttaaaatcaagaaaacttgagttgtgcataaataaataaaatgaggatgaatagtgagtat 295  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39721326 atgatcttaaaatcaagaaaacttgagttgtgcataaataaataaaatgaggatgaatagtaagtat 39721260  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 17011819 - 17011713
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggacacatggctatagtgatcttaaaatcaagaaaact 251  Q
    ||||||| |||||||||| |||| || ||||||||| ||||| |||||||||||||||||   | ||| ||||  |||||||| |||||||||| || ||    
T  17011819 ttatgatccaaaatagcaaatgagaagatacacttggcataacataattggttgaggtaa--tgtcacttggc--tagtgatcctaaaatcaaggaacct 17011724  T
Q  252 tgagttgtgca 262  Q
    | |||||||||    
T  17011723 taagttgtgca 17011713  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 17545382 - 17545488
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggacacatggctatagtgatcttaaaatcaagaaaact 251  Q
    ||||||| |||||||||| |||| || ||||||||| ||||| |||||||||||||||||   | ||| ||||  |||||||| |||||||||| || ||    
T  17545382 ttatgatccaaaatagcaaatgagaagatacacttggcataacataattggttgaggtaa--tgtcacttggc--tagtgatcctaaaatcaaggaacct 17545477  T
Q  252 tgagttgtgca 262  Q
    | |||||||||    
T  17545478 taagttgtgca 17545488  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 9618109 - 9618053
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgagg 208  Q
    |||||||  ||||||||| ||||| ||||||| ||||||||  ||||||||||||||    
T  9618109 ttatgatctaaaatagcatatgaagaaatacatttgacatatcataattggttgagg 9618053  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 12324432 - 12324544
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggacacatggctatagtgatcttaaaatcaagaaaact 251  Q
    |||||||||||||||||| ||||  ||||||| ||||| ||| |||||| ||||||||||||||| || ||||    ||||||||||||||||| || ||    
T  12324432 ttatgattcaaaatagcatatgaggaaatacatttgacctaacataattagttgaggtaaatggagacgtggc--gtgtgatcttaaaatcaagtaacct 12324529  T
Q  252 tgagttgtgcataaa 266  Q
    |||||||||||||||    
T  12324530 tgagttgtgcataaa 12324544  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 152 - 268
Target Start/End: Original strand, 5699924 - 5700038
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggacacatggctatagtgatcttaaaatcaagaaaact 251  Q
    |||||||||||||||||| || |  ||||||||||| ||||| |||||||||| ||||||||| |||| || |  |||||||| |||||||||| ||  |    
T  5699924 ttatgattcaaaatagcatattaggaaatacacttggcataacataattggttaaggtaaatgaacacgtgac--tagtgatcctaaaatcaaggaagtt 5700021  T
Q  252 tgagttgtgcataaata 268  Q
    || | ||||||||||||    
T  5700022 tgggctgtgcataaata 5700038  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 16472293 - 16472379
Alignment:
Q  180 tacacttgacataatataattggttgaggtaaatggacacatggctatagtgatcttaaaatcaagaaaacttgagttgtgcataaata 268  Q
    |||| |||||||||||||||||||| || | ||||||||  |||   || |||||||||||||||||||||| || | |||||||||||    
T  16472293 tacatttgacataatataattggttaagatgaatggaca--tggaactattgatcttaaaatcaagaaaactagaatcgtgcataaata 16472379  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 8485966 - 8485873
Alignment:
Q  154 atgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggacacatggctatagtgatcttaaaatcaagaaaa 249  Q
    |||||||| |||||||  |||  | ||||| ||| ||||| ||||||| |||||||||||||||||||| |  ||||| ||||||||| |||||||    
T  8485966 atgattcagaatagcatttgaggatatacatttggcataacataattgattgaggtaaatggacacatgac--tagtggtcttaaaataaagaaaa 8485873  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 290
Target Start/End: Original strand, 31380501 - 31380638
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattgg--ttgaggtaaatggacacatggctatagtgatcttaaaatcaagaaaa 249  Q
    |||||||||||| ||||| |||   ||||||||||  ||||| ||||||||  ||||  ||||||||||| ||||||   | ||| |||||||||  ||     
T  31380501 ttatgattcaaagtagcatatgtggaaatacacttagcataacataattggggttgatataaatggacacgtggctaa--tcatcctaaaatcaatgaac 31380598  T
Q  250 cttgagttgtgcataaataaataaaatgaggatgaatagtg 290  Q
    |||||||||||||||||| | | |||||||||| |||||||    
T  31380599 cttgagttgtgcataaat-agtgaaatgaggatcaatagtg 31380638  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 11183884 - 11183936
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggtt 204  Q
    ||||||||| |||||||| |||| |||||||||||| || ||| |||||||||    
T  11183884 ttatgattctaaatagcatatgagaaaatacacttggcaaaatgtaattggtt 11183936  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 152 - 264
Target Start/End: Complemental strand, 15027128 - 15027019
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggacacatggctatagtgatcttaaaatcaagaaaact 251  Q
    ||||||| ||||||| ||||||| |||||||| ||| ||||| ||||||||||||||||||| |||||  |||  |||||||| |||||||||| || ||    
T  15027128 ttatgatccaaaataacacatgagaaaatacatttggcataacataattggttgaggtaaat-gacactcggc--tagtgatcctaaaatcaaggaacct 15027032  T
Q  252 tgagttgtgcata 264  Q
    | |||||||||||    
T  15027031 taagttgtgcata 15027019  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 34272246 - 34272312
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggaca 218  Q
    |||||||||||||||||| |||| |||||||| ||| ||||| |||||||||| |||||||||||||    
T  34272246 ttatgattcaaaatagcatatgagaaaatacatttggcataacataattggtttaggtaaatggaca 34272312  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 30062991 - 30063047
Alignment:
Q  162 aaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggaca 218  Q
    ||||||||||||| |||||||||||| || ||| |||||||||||||||||||||||    
T  30062991 aaatagcacatgagaaaatacacttggcaaaatgtaattggttgaggtaaatggaca 30063047  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 6919325 - 6919437
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggacacatggctatagtgatcttaaaatcaagaaaact 251  Q
    ||||||||||| |||||| |||  |||||||||||| ||||| |||||||||||||| |||||||||  ||||  |||||||  |||||| ||||||  |    
T  6919325 ttatgattcaatatagcatatgggaaaatacacttggcataacataattggttgaggcaaatggacatgtggc--tagtgatactaaaattaagaaagtt 6919422  T
Q  252 tgagttgtgcataaa 266  Q
    ||  |||||||||||    
T  6919423 tggattgtgcataaa 6919437  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 10086067 - 10086133
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacac-ttgacataatataattggttgaggtaaatggaca 218  Q
    ||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||| ||||||||||    
T  10086067 ttatgattcaaaatagcacatgagaaaatacacattga-aaaatataattggttgagataaatggaca 10086133  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 23406520 - 23406586
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggaca 218  Q
    ||||||||||||||||||||||| ||||||||||||  | ||| |||||||||||| ||||| ||||    
T  23406520 ttatgattcaaaatagcacatgagaaaatacacttggaaaaatgtaattggttgagctaaatagaca 23406586  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 5199005 - 5198941
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggaca 218  Q
    |||||||| ||||||  |||||| |||||||||| | ||||| |||||||||||||| |||||||||    
T  5199005 ttatgattgaaaata--acatgagaaaatacactcggcataacataattggttgaggcaaatggaca 5198941  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 268
Target Start/End: Complemental strand, 32471377 - 32471263
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatggacacatggctatagtgatcttaaaatcaagaaaact 251  Q
    |||||||||||||||| | ||||  |||||| |||| |||||||| ||||||||||| ||||||  |||||    |||||||| |||||||||| || ||    
T  32471377 ttatgattcaaaatagaatatgaggaaatacgcttggcataatattattggttgaggcaaatgg--acatgtagttagtgatcctaaaatcaaggaagct 32471280  T
Q  252 tgagttgtgcataaata 268  Q
    ||  |||||||||||||    
T  32471279 tggattgtgcataaata 32471263  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 12900715 - 12900776
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaat 213  Q
    ||||||||||| ||||||||||| |||||||||||| || ||| |||||||||||| |||||    
T  12900715 ttatgattcaagatagcacatgagaaaatacacttggcaaaatgtaattggttgagctaaat 12900776  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 41912 - 41975
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatgg 215  Q
    |||||||||||||||||| ||||||||||| |||||  |||| | |||||||||| ||||||||    
T  41912 ttatgattcaaaatagcatatgaaaaaatagacttgggataacagaattggttgaagtaaatgg 41975  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 14594908 - 14594845
Alignment:
Q  152 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggttgaggtaaatgg 215  Q
    |||||||||||||||||| ||||||||||| |||||  |||| | |||||||||| ||||||||    
T  14594908 ttatgattcaaaatagcatatgaaaaaatagacttgggataacagaattggttgaagtaaatgg 14594845  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 16677 - 16619
Alignment:
Q  156 gattcaaaatagcacatgaaaaaa-tacacttgacataatataattggttgaggtaaat 213  Q
    |||||||||||||| ||||||||| |||||||||||||  || ||||||||||| ||||    
T  16677 gattcaaaatagcatatgaaaaaaatacacttgacatatcattattggttgaggcaaat 16619  T

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