View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20286_high_6 (Length: 250)
Name: NF20286_high_6
Description: NF20286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20286_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32582785 - 32583017
Alignment:
| Q |
1 |
ttaacaaatggagtattaattagtaataattaaccataatcacataatctaagcaataaatctgttacttccttttaacagtttctttttccttgaacaa |
100 |
Q |
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| T |
32582785 |
ttaacaaatgaagtattcattagtaataattaaccataatcacaaaatctaagcaataaatctgtaacttccttttaacagtttctttttccttgaacaa |
32582884 |
T |
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| Q |
101 |
aatttnnnnnnnnnngtgaaagatgaattaatttgcttacatgttgagcaatgaagagatcgatttcagattgttgattttggagatgataaaggagatt |
200 |
Q |
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| T |
32582885 |
aat-----aaaaaaagtgaaagatgaattaatt-gcttacatgttgagcaatgaagagatcgatttcagattgttgattttggagatgataaaggagatt |
32582978 |
T |
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| Q |
201 |
ctgatcaacaaaggaaggttgagatgagagtttgatatt |
239 |
Q |
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| T |
32582979 |
ctgatcaacaaaggaaggttgagatgagagtttgatatt |
32583017 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 38146675 - 38146610
Alignment:
| Q |
169 |
gattgttgattttggagatgataaaggagattctgatcaacaaaggaaggttgagatgagagtttg |
234 |
Q |
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| T |
38146675 |
gattgttgattttggaataaatagaggagattcttatcaacaaaggaaggttgagatgagagtttg |
38146610 |
T |
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