View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20286_high_8 (Length: 236)
Name: NF20286_high_8
Description: NF20286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20286_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 41262462 - 41262333
Alignment:
| Q |
8 |
atgtatgagaaaataaatagtttacctcatttagatggccaacatgtcctattctaaaaactttcccagcaactttgttcaatccacctcctaagcttaa |
107 |
Q |
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| T |
41262462 |
atgtatgagaaaataaatagtttacctcatttagattgccaacatgtcctattctaaaaactttcccagcaactttgttcaatccacctcctaagcttaa |
41262363 |
T |
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| Q |
108 |
attgtatctcttccatgccctactaactat |
137 |
Q |
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| T |
41262362 |
attgtatctcttccatgccctactaactat |
41262333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 39187734 - 39187869
Alignment:
| Q |
1 |
atgatggatgtatgagaaaataaatagtttacctcatttagatggccaacatgtcctattctaaaaactttcccagcaactttgttcaatccacctccta |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
39187734 |
atgatggatgtatgagaaa-taaatagtttacctcatttagatggccaacatgtcctattctgaaaacttttccagcaactttgttcaatccacctccta |
39187832 |
T |
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| Q |
101 |
agcttaaattgtatctcttccatgccctactaactat |
137 |
Q |
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| T |
39187833 |
agcttaaattgtatctcttccatgccctactaactat |
39187869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 28458645 - 28458780
Alignment:
| Q |
1 |
atgatggatgtatgagaaaataaatagtttacctcatttagatggccaacatgtcctattctaaaaactttcccagcaactttgttcaatccacctccta |
100 |
Q |
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| T |
28458645 |
atgatggatgtatgagaaa-taactagtttacctcatttagatggccaacatgtcctattctgaatactttcccagcaactttgttcaatccacctccta |
28458743 |
T |
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| Q |
101 |
agcttaaattgtatctcttccatgccctactaactat |
137 |
Q |
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| T |
28458744 |
agcttaaattgcatctcttccatgccctactaactat |
28458780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 41261945 - 41261859
Alignment:
| Q |
136 |
atagaacaatggaatggaaggagtgtatggccaataagttcccaagttgtagcatttcaagtaaccattctaatcaaagaaagatct |
222 |
Q |
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| T |
41261945 |
atagagcaatggaatggaaggagtgtatggccaataagttcccaagttgtagcatttcaagtaaccattctaatcaaagaaagatct |
41261859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 28459176 - 28459251
Alignment:
| Q |
147 |
gaatggaaggagtgtatggccaataagttcccaagttgtagcatttcaagtaaccattctaatcaaagaaagatct |
222 |
Q |
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| T |
28459176 |
gaatggaaggagtgtatggccaataagttcccaagttgtagcatttcaagtaaccattccaatcaaagaaagatct |
28459251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 39188234 - 39188309
Alignment:
| Q |
147 |
gaatggaaggagtgtatggccaataagttcccaagttgtagcatttcaagtaaccattctaatcaaagaaagatct |
222 |
Q |
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| T |
39188234 |
gaatggaaggagtgtatggccaataagttcccaagttgtagcatttcaagtaaccattccaatcaaagaaagatct |
39188309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 16792015 - 16791945
Alignment:
| Q |
147 |
gaatggaaggagtgtatggccaataagttcccaagttgtagcatttcaagtaaccattctaatcaaagaaa |
217 |
Q |
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| T |
16792015 |
gaatggaaggagtgtatggccaataagttcccatcttgtagaacttcaggtagtcactccaatcaaagaaa |
16791945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 16792665 - 16792576
Alignment:
| Q |
45 |
gccaacatgtcctattctaaaaactttcccagcaactttgttcaatccacctcctaagcttaaattgtatctcttccatgccctactaac |
134 |
Q |
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| T |
16792665 |
gccaagatgtccaattctgaaaacctttccagcaactttgtttagtcccaaacctaagctcaaattgtatcttttccatgcccttctaac |
16792576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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