View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20286_low_11 (Length: 234)
Name: NF20286_low_11
Description: NF20286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20286_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 54986509 - 54986722
Alignment:
| Q |
1 |
tttgtcattggactaatgaacttatgggttgtaattttttcaggtgggtagccgcacagagtgtgttctatcacttgtacaatcaagtctcttatatgtc |
100 |
Q |
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| T |
54986509 |
tttgtcattggactaatgaacttatgggttgtaattttttcaggtgggtagccgcacagagtgtgttctatcacttgtacaatcaagtctcttatatgtc |
54986608 |
T |
|
| Q |
101 |
tctggatcagatttctccattaacatttagcatagggaacacgatgaagagaatctcggttattgtctcttcgatcattatcttccacacaccaattcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54986609 |
tctggatcagatttctccattaacatttagcatagggaacacgatgaagagaatctcggttattgtctcttcgatcattatcttccacacaccaattcag |
54986708 |
T |
|
| Q |
201 |
ccaaacaatgccct |
214 |
Q |
| |
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|||||||||||||| |
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| T |
54986709 |
ccaaacaatgccct |
54986722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 7883891 - 7884030
Alignment:
| Q |
60 |
agtgtgttctatcacttgtacaatcaagtctcttatatgtctctggatcagatttctccattaacatttagcatagggaacacgatgaagagaatctcgg |
159 |
Q |
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| T |
7883891 |
agtgtgttctaccatttatataatcaagtgtcatacatgtctcttgatcagatttctcccttaacatttagcataggaaatacaatgaagagaatttctg |
7883990 |
T |
|
| Q |
160 |
ttattgtctcttcgatcattatcttccacacaccaattca |
199 |
Q |
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| T |
7883991 |
taatagtctcttccatcattatctttcacacaccacttca |
7884030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 18397674 - 18397835
Alignment:
| Q |
41 |
caggtgggtagccgcacagagtgtgttctatcacttgtacaatcaagtctcttatatgtctctggatcagatttctccattaacatttagcatagggaac |
140 |
Q |
| |
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|||||||||||| || |||||| | |||||||| | |||||||| || ||||| ||||| ||||| |||| ||||| ||||||||||||| || ||| |
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| T |
18397674 |
caggtgggtagcagctcagagtatattctatcatctatacaatcaggtgtcttacatgtcgttggatgagatctctcccctaacatttagcattggaaac |
18397773 |
T |
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| Q |
141 |
acgatgaagagaatctcggttattgtctcttcgatcattatcttccacacaccaattcagcc |
202 |
Q |
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|| ||||| | || || || || || ||||| || || |||||||| |||||||||||||| |
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| T |
18397774 |
accatgaaacgtatatctgtcatagtatcttcaattatcatcttccatacaccaattcagcc |
18397835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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