View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20286_low_12 (Length: 230)
Name: NF20286_low_12
Description: NF20286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20286_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 10554164 - 10554272
Alignment:
| Q |
19 |
atgtaggttaaagtggctaatgggcaatgactgcaaatgcctcagtttaagggatcttatattttattgcttaaaaggccggctaggcttttctacaatc |
118 |
Q |
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| T |
10554164 |
atgtaggttaaagtggctaatgggcaatgactgcaaatgcctcagtttaagggatcttgtattttattgcttaaaaggccggctaggcttttctataatc |
10554263 |
T |
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| Q |
119 |
atagttaaa |
127 |
Q |
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||||||||| |
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| T |
10554264 |
atagttaaa |
10554272 |
T |
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Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 10556487 - 10556581
Alignment:
| Q |
125 |
aaattccttcaatatcaaaagcaaagggaataatcttcagtgtta--actccttattatatacacctttctaactacaaaactcaaactccacta |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10556487 |
aaattccttcaataacaaaagcaaagggaataatcttcagtgttcccactccttattatatacacctttctaactacaaaacttaaactccacta |
10556581 |
T |
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