View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20286_low_2 (Length: 478)
Name: NF20286_low_2
Description: NF20286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20286_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 90 - 444
Target Start/End: Original strand, 16978772 - 16979137
Alignment:
| Q |
90 |
gagagagaaaaagtgttgtctaaggatgatgaagtttaatgttaggaaagtgatgtaatgaaatactataaaaacatggaaatagaaaaagaatcagaca |
189 |
Q |
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| T |
16978772 |
gagagagaaagagtgttgtctaaggatgatgaagtttaatgttaggaaagtgatgtaatgaaatactataaaaacatgtaaatagaaaaagaatcagaca |
16978871 |
T |
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| Q |
190 |
ttggtgtgtaacacaaatagagcaaagagaaagagagacgtgtaactggcgccaaactatatgaggaaaacatcacttatgaacaccaaactaaata--- |
286 |
Q |
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| T |
16978872 |
ttggtgtgtaacacaaatagagcaaagagaaagagagacgtgtaactggcgccaaactatatgaggaaaacctcacttatgaacaccaaactaaataaat |
16978971 |
T |
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| Q |
287 |
aaatattccaagatcttatgcaccgacggtgtaaaatatttttacactgtcattttatatgaatggaactaatcatctttctatgcttttttaattc--- |
383 |
Q |
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| T |
16978972 |
aaatattccaagatcttatgcaccgacggtgtaaaatatttttacactgtcatcttatatgaatggaaccaatcatcttgctatgcttttttaattcatt |
16979071 |
T |
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| Q |
384 |
-----atttgaatgtacttatttaaagaggttaatgactatgcaccgactgtgtaaaatatgttta |
444 |
Q |
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| T |
16979072 |
tgattatttgaatgtacttatttaaagaggttaatgactatacaccgacggtgtaaaatattttta |
16979137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 16979114 - 16979172
Alignment:
| Q |
307 |
caccgacggtgtaaaatatttttacactgtcattttatatgaatggaactaatcatctt |
365 |
Q |
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| T |
16979114 |
caccgacggtgtaaaatatttttagattgtcgttcaatatgaatggaaccaatgatctt |
16979172 |
T |
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