View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20287_high_12 (Length: 421)
Name: NF20287_high_12
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 21 - 411
Target Start/End: Complemental strand, 26406002 - 26405612
Alignment:
| Q |
21 |
agtccaaactccaattgacattcttatatatgcaaagataccaaaatggcaagtgaatgatgtcttttcatgatcttctagattgacagtaatttaattg |
120 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26406002 |
agtccaaactccaaatgacattcttatatatgcaaagataccaaaatggcaagtgaatgatgtcttttcatgatcttctagattgacagtaatttaattg |
26405903 |
T |
|
| Q |
121 |
tatcatgagtatccatcataaaaacagtaatatgattgtcttgctaatcattccaacatctggcccatgaatggcaatgggaaatggtccttcctggttg |
220 |
Q |
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||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
26405902 |
tatcatgagtagccatcacaaaaacagtaatatcattgtcttgctaatcattccaacatctggtccatgaatggcaattggaaatggtccttcctggttg |
26405803 |
T |
|
| Q |
221 |
cttgatttaatctcctgcagtcaatgcacattcgccatactgtgactgttctgggaggagtcaataattcatttttctcattccgaattacagtcattcc |
320 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26405802 |
cttgatttaatctcctgcagtcaatgcacattcaccatactgtgactgttctgggaggaatcaataattcatttttctcattccgaattacagtcattcc |
26405703 |
T |
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| Q |
321 |
tcctttctttggtaccaattggacaggactggcccgagagctatttgaaatgggatatatcatacctgcctcgacaattttaccacttctt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26405702 |
tcctttctttggtaccaattggacaggactggcccgagagctatttgaaatgggatatatcatacctgcctcgacaattttaccacttctt |
26405612 |
T |
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