View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20287_high_14 (Length: 333)
Name: NF20287_high_14
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 13725598 - 13725282
Alignment:
| Q |
1 |
gcaatgttttaaatcgcaataacttttaaatagtcagacattttaatttataactttggtcatgatccttaatattatagagaattgcggacaaattttg |
100 |
Q |
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| T |
13725598 |
gcaatgttttaaatcgcaataacttttaaatagttagacattttaatttataactttggtcatgatccttaatattatagagaattgcggacaaattttg |
13725499 |
T |
|
| Q |
101 |
caatcactgcgaaatcagaaaacatgctaacgtggtcgataaaattgcgnnnnnnnnnnnnnnnnnataaacctttacacgtaattttgatatttgttga |
200 |
Q |
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| T |
13725498 |
caatcaccgcgaaatcagaacacatgctaacgtggtcgataaaattgcg-ttttttttttttttttataaacctttacaagtaattttgatatttgatga |
13725400 |
T |
|
| Q |
201 |
ttgaaatctaatacgaaaattttatttaggttgtggattggttggcgaagaaatggcgattaaaaacaataggaccatgtattccatctatgtttttaga |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13725399 |
ttgaaatctaatatgaaaattttatttaggttgtggattggatggcgaagaaatggcgattaaaaacaataggaccatgcattccatctatgtttttaga |
13725300 |
T |
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| Q |
301 |
caaaagacttgaagatga |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
13725299 |
caaaagacttgaagatga |
13725282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 13670663 - 13670562
Alignment:
| Q |
217 |
aaattttatttaggttgtggattggttggcgaagaaatggcgattaaaaacaataggaccatgtattccatctatgtttttagacaaaagacttgaagat |
316 |
Q |
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||||||||||||||| ||||||||| ||| ||||| |||| ||||| ||||||||||| | || |||||||| ||||| || ||||||||| ||||| |
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| T |
13670663 |
aaattttatttaggtagtggattggatggtgaagatctggccattaaggacaataggaccgtcaataccatctatatttttggataaaagacttaaagat |
13670564 |
T |
|
| Q |
317 |
ga |
318 |
Q |
| |
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|| |
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| T |
13670563 |
ga |
13670562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 318
Target Start/End: Original strand, 13687951 - 13688051
Alignment:
| Q |
218 |
aattttatttaggttgtggattggttggcgaagaaatggcgattaaaaacaataggaccatgtattccatctatgtttttagacaaaagacttgaagatg |
317 |
Q |
| |
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||||| |||||||| || |||||||| | ||| | ||||| |||||| ||||||||||||| | ||||||||||| || ||||||||||| |||||| |
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| T |
13687951 |
aatttgatttaggtggttgattggttagtgaaaatatggccattaaagacaataggaccatcagtgccatctatgttattggacaaaagactcaaagatg |
13688050 |
T |
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| Q |
318 |
a |
318 |
Q |
| |
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| |
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| T |
13688051 |
a |
13688051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 13696001 - 13695965
Alignment:
| Q |
266 |
acaataggaccatgtattccatctatgtttttagaca |
302 |
Q |
| |
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||||||||||||||| ||||||| ||||||||||||| |
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| T |
13696001 |
acaataggaccatgtgttccatccatgtttttagaca |
13695965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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