View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20287_high_16 (Length: 304)
Name: NF20287_high_16
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 23628163 - 23627889
Alignment:
| Q |
15 |
gagatgaagatgggttggttatgcccaccttggtatatttggctcgtgagaaaagaccccaatttcatcataacttcaaagctggagctatgaattcatt |
114 |
Q |
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| T |
23628163 |
gagatgaagatgggtttgttatgcccacattggtatatttggctcgtgagaaaagaccccaatttcaacataacttcaaagctggagctatgaattcatt |
23628064 |
T |
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| Q |
115 |
ggtactctatataatgtattaattgttccccaagaaagtatgcagtgtattaattgttggtccacaatgcagataagggtgtcatcaatgattagcaatg |
214 |
Q |
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| T |
23628063 |
ggtactctatataatgtattaattgttccccaagaaagtatgcagtgtattaattgttggtccacaatgcagataagggtgtcatcaatgattagcaatg |
23627964 |
T |
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| Q |
215 |
gaaaaataattctgaatgtagattgtgacatgtactcaaacaattctcaatcaataagagatgcactttgcttct |
289 |
Q |
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| T |
23627963 |
ggaaaataattctgaatgtagattgtgacatgtactcaaacaattctcaatcaataagagatgcactttgcttct |
23627889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 23640777 - 23640499
Alignment:
| Q |
15 |
gagatgaagatgggttggttatgcccaccttggtatatttggctcgtgagaaaagaccccaatttcatcataacttcaaagctggagctatgaattcatt |
114 |
Q |
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| T |
23640777 |
gagatgaagatgggttggttatgcccaccttggtatatttggctcgtgagaaaagaccccaatttcatcataacttcaaagctggagctatgaattcatt |
23640678 |
T |
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| Q |
115 |
ggtactctatataatgt-attaattgttcccc---aagaaagtatgcagtgtattaattgttggtccacaatgcagataagggtgtcatcaatgattagc |
210 |
Q |
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| T |
23640677 |
ggtactctatataatgttattaattgtaccccttaaagaaagtatacaatgaattaattgttggtcctcaatgcagataagggtgtcatcaatgattagc |
23640578 |
T |
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| Q |
211 |
aatggaaaaataattctgaatgtagattgtgacatgtactcaaacaattctcaatcaataagagatgcactttgcttct |
289 |
Q |
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| T |
23640577 |
aatggaaaaataattctgaatgtagattgtgacatgtactcaaacaattctcaatcaataagagatgcactttgcttct |
23640499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 23654525 - 23654429
Alignment:
| Q |
180 |
aatgcagataagggtgtcatcaatgattagcaatggaaaaataattctgaatgtagattgtgacatgtactcaaacaattctcaatcaataagagat |
276 |
Q |
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| T |
23654525 |
aatgcagttaagggtgtcttcgattatcagcaacgggaaagtcattctaaatgtagattgtgacatgtactcaaacaattcagaatctataagagat |
23654429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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