View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20287_high_2 (Length: 615)

Name: NF20287_high_2
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20287_high_2
NF20287_high_2
[»] chr6 (10 HSPs)
chr6 (135-598)||(3949074-3949558)
chr6 (135-369)||(25167833-25168067)
chr6 (1-115)||(31976316-31976430)
chr6 (230-369)||(10990014-10990153)
chr6 (230-369)||(4263360-4263496)
chr6 (18-115)||(31110679-31110776)
chr6 (16-119)||(31952944-31953047)
chr6 (3-111)||(11427688-11427796)
chr6 (18-111)||(32869763-32869856)
chr6 (18-111)||(17598639-17598732)
[»] chr4 (24 HSPs)
chr4 (135-369)||(37049990-37050225)
chr4 (14-113)||(29977966-29978065)
chr4 (14-119)||(29239967-29240072)
chr4 (15-111)||(23608317-23608413)
chr4 (1-112)||(56300086-56300197)
chr4 (182-370)||(16832082-16832271)
chr4 (185-351)||(24239788-24239955)
chr4 (18-116)||(50052345-50052443)
chr4 (296-369)||(19852474-19852547)
chr4 (142-309)||(18522202-18522369)
chr4 (5-117)||(31910264-31910376)
chr4 (14-117)||(28480184-28480287)
chr4 (14-117)||(28481059-28481162)
chr4 (14-117)||(28481934-28482037)
chr4 (296-369)||(16593826-16593899)
chr4 (18-111)||(41236432-41236525)
chr4 (3-115)||(41823952-41824064)
chr4 (14-74)||(47104625-47104685)
chr4 (40-116)||(50526088-50526164)
chr4 (3-111)||(6034114-6034222)
chr4 (6-113)||(40574852-40574959)
chr4 (18-111)||(42044289-42044382)
chr4 (18-111)||(48182971-48183064)
chr4 (14-118)||(29589655-29589759)
[»] chr2 (23 HSPs)
chr2 (135-369)||(37344609-37344843)
chr2 (171-369)||(31092306-31092505)
chr2 (184-369)||(14296202-14296388)
chr2 (238-367)||(18811704-18811833)
chr2 (18-116)||(2533208-2533306)
chr2 (14-111)||(7465657-7465754)
chr2 (18-111)||(28863540-28863633)
chr2 (9-114)||(44152003-44152108)
chr2 (3-111)||(17473090-17473198)
chr2 (24-115)||(20700906-20700997)
chr2 (5-116)||(42257265-42257376)
chr2 (14-116)||(17823869-17823971)
chr2 (18-111)||(19930742-19930835)
chr2 (1-93)||(3154211-3154303)
chr2 (5-116)||(40613819-40613930)
chr2 (266-355)||(8413844-8413933)
chr2 (14-75)||(17819962-17820023)
chr2 (40-115)||(36168943-36169018)
chr2 (230-336)||(18693124-18693230)
chr2 (18-111)||(13438428-13438521)
chr2 (17-118)||(21301415-21301516)
chr2 (18-104)||(33436029-33436115)
chr2 (18-95)||(9058565-9058642)
[»] chr5 (21 HSPs)
chr5 (135-327)||(32278607-32278794)
chr5 (1-120)||(6259914-6260033)
chr5 (192-367)||(788228-788403)
chr5 (184-369)||(35811120-35811305)
chr5 (226-360)||(36868291-36868425)
chr5 (230-369)||(19215372-19215511)
chr5 (1-114)||(6679766-6679879)
chr5 (5-117)||(26720588-26720700)
chr5 (5-117)||(26990337-26990449)
chr5 (40-115)||(15409528-15409603)
chr5 (18-111)||(18520806-18520899)
chr5 (18-103)||(36732872-36732957)
chr5 (3-116)||(31009058-31009171)
chr5 (12-113)||(35943812-35943913)
chr5 (3-111)||(14831884-14831992)
chr5 (3-111)||(33149560-33149668)
chr5 (16-73)||(16327984-16328041)
chr5 (173-289)||(37307134-37307251)
chr5 (18-111)||(40145492-40145585)
chr5 (25-117)||(3921181-3921273)
chr5 (329-369)||(37307257-37307297)
[»] chr7 (21 HSPs)
chr7 (135-300)||(34547939-34548104)
chr7 (262-354)||(19407866-19407958)
chr7 (234-369)||(26449531-26449666)
chr7 (5-116)||(31735949-31736060)
chr7 (12-118)||(35522955-35523061)
chr7 (18-111)||(4999436-4999529)
chr7 (1-114)||(16374743-16374856)
chr7 (18-111)||(19329927-19330020)
chr7 (40-115)||(46033719-46033794)
chr7 (57-116)||(46374741-46374800)
chr7 (18-111)||(8080305-8080398)
chr7 (135-250)||(16099673-16099785)
chr7 (305-369)||(33191268-33191332)
chr7 (5-116)||(21234473-21234584)
chr7 (40-115)||(26296751-26296826)
chr7 (33-115)||(41423782-41423864)
chr7 (18-111)||(7389474-7389566)
chr7 (9-54)||(18207255-18207300)
chr7 (18-111)||(38837302-38837395)
chr7 (38-114)||(32045942-32046018)
chr7 (18-118)||(32564341-32564441)
[»] chr1 (23 HSPs)
chr1 (171-369)||(13061893-13062092)
chr1 (145-346)||(14344068-14344267)
chr1 (230-355)||(3374307-3374432)
chr1 (231-369)||(17114707-17114844)
chr1 (1-115)||(32813315-32813429)
chr1 (224-369)||(50903467-50903612)
chr1 (138-223)||(44163661-44163744)
chr1 (294-367)||(41035080-41035153)
chr1 (5-118)||(45044475-45044588)
chr1 (232-369)||(49491873-49492009)
chr1 (3-111)||(41758875-41758983)
chr1 (3-115)||(51898601-51898713)
chr1 (18-113)||(49811447-49811542)
chr1 (1-111)||(37649266-37649376)
chr1 (18-111)||(27564657-27564750)
chr1 (294-369)||(19394182-19394257)
chr1 (70-117)||(26440861-26440908)
chr1 (18-101)||(38632253-38632336)
chr1 (42-111)||(48716204-48716273)
chr1 (18-111)||(9474798-9474891)
chr1 (19-111)||(3000405-3000497)
chr1 (19-111)||(38595240-38595332)
chr1 (3-111)||(47452242-47452350)
[»] chr3 (32 HSPs)
chr3 (171-354)||(29346803-29346987)
chr3 (12-115)||(25407065-25407168)
chr3 (182-359)||(35526503-35526681)
chr3 (235-369)||(16893067-16893201)
chr3 (1-120)||(26141443-26141564)
chr3 (238-367)||(51524859-51524988)
chr3 (3-124)||(33118759-33118881)
chr3 (8-118)||(47531940-47532050)
chr3 (5-118)||(41189679-41189792)
chr3 (19-119)||(20764829-20764929)
chr3 (3-111)||(49607484-49607592)
chr3 (40-115)||(11347840-11347915)
chr3 (19-118)||(24699870-24699968)
chr3 (294-369)||(31067165-31067241)
chr3 (16-115)||(14623757-14623856)
chr3 (294-369)||(26796875-26796950)
chr3 (18-117)||(51419276-51419375)
chr3 (18-116)||(8076478-8076576)
chr3 (16-118)||(13897970-13898072)
chr3 (16-118)||(43746422-43746524)
chr3 (14-115)||(21746106-21746207)
chr3 (18-111)||(33644285-33644378)
chr3 (17-118)||(35536710-35536811)
chr3 (18-111)||(53982096-53982189)
chr3 (14-118)||(30801648-30801752)
chr3 (40-111)||(36707350-36707421)
chr3 (135-197)||(49106934-49106995)
chr3 (15-119)||(1758373-1758474)
chr3 (18-111)||(9563084-9563177)
chr3 (18-115)||(35965700-35965797)
chr3 (6-50)||(32605897-32605941)
chr3 (19-115)||(35093671-35093767)
[»] chr8 (23 HSPs)
chr8 (235-367)||(27786783-27786915)
chr8 (171-369)||(29369093-29369292)
chr8 (1-116)||(43414498-43414613)
chr8 (297-369)||(399778-399850)
chr8 (3-114)||(5957900-5958011)
chr8 (39-116)||(15048098-15048175)
chr8 (281-369)||(8831264-8831352)
chr8 (3-111)||(9122255-9122363)
chr8 (294-366)||(36206475-36206547)
chr8 (3-115)||(37038549-37038661)
chr8 (18-115)||(4854781-4854878)
chr8 (19-114)||(25838275-25838370)
chr8 (40-111)||(42710216-42710287)
chr8 (18-112)||(40423864-40423958)
chr8 (24-118)||(42354503-42354597)
chr8 (18-115)||(8841350-8841447)
chr8 (18-111)||(14548007-14548100)
chr8 (3-111)||(34012218-34012326)
chr8 (294-369)||(28225768-28225843)
chr8 (14-116)||(42221596-42221698)
chr8 (18-103)||(1179870-1179955)
chr8 (18-115)||(10284549-10284646)
chr8 (18-111)||(12831132-12831225)
[»] scaffold1268 (1 HSPs)
scaffold1268 (3-114)||(848-959)
[»] scaffold1267 (1 HSPs)
scaffold1267 (3-114)||(848-959)
[»] scaffold0531 (1 HSPs)
scaffold0531 (294-369)||(10249-10324)
[»] scaffold0110 (1 HSPs)
scaffold0110 (45-117)||(8779-8851)
[»] scaffold0316 (1 HSPs)
scaffold0316 (40-118)||(17210-17288)


Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 135 - 598
Target Start/End: Complemental strand, 3949558 - 3949074
Alignment:
Q  135 tcaaaagtatgaccattcttggctaaataaagactaaaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgca 233  Q
    ||||||||||||||||||||||| |||||| |||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  3949558 tcaaaagtatgaccattcttggccaaataacgactgaaa-gactactccctctaagaaaatttgaacaaaagtattggtattctcagatattctgttgca 3949460  T
Q  234 attgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcacttt 333  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||| || ||| ||| | ||||||||| |||| ||||||||||| |||||||||||||    
T  3949459 attgaatcaactattctgcatctgtcaaggcggctttggaggtacccttctgaacacgagtcctcattctggctcagttaaaactaaaaagcttcacttt 3949360  T
Q  334 gttcacctgtttcttcttctttctctctgccttagttggactattatcatcatgactattagttttcgctattcctattcaaataacaattcgagtagtt 433  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||||||    
T  3949359 attcacctgtttcttcttctttccctctgccttagttggactattatcatcataactattagttttcgctattcctattcaaatgccaattggagtagtt 3949260  T
Q  434 ---------------------actgcaactgatatatttctgaagttcgcctgcaaaaattgcaattttcaaatatcaacaaccaatgaaaaaagtagga 512  Q
                         ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  3949259 agagaaaagaaaacccccatgactgcaactgatatatttctgaagttcgcctgcaaaaattgcatttttcaaatatcaacaaccaataaaaaaagtagga 3949160  T
Q  513 tcttttttctaatttacacaccaacatgaatagttaagttttgtttattattctttcaattttacatcattgaaacatgatatata 598  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3949159 ttttttttctaatttacacaccaacatgaatagttaagttttgtttactattctttcaattttacatcattgaaacatgatatata 3949074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 135 - 369
Target Start/End: Complemental strand, 25168067 - 25167833
Alignment:
Q  135 tcaaaagtatgaccattcttggctaaataaagactaaaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgca 233  Q
    |||||||||||||||| |||||| ||| || |||||||| ||||||||| |||| |||||||| ||||||||||||||||||| || || ||||||||||    
T  25168067 tcaaaagtatgaccatacttggccaaacaacgactaaaa-gactactctttctatgaaaatttgaacaaaagtattggtattcccatatattctgttgca 25167969  T
Q  234 attgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcacttt 333  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||| ||||| |||  | ||||| ||||||||||||||||||||||| ||||||||||    
T  25167968 attgaaccaactattctgtatctgtcaaggcggctttggaggtacccttttgggcatgagtcctctttccggctgagttaaaactagaaggcttcacttt 25167869  T
Q  334 gttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||||| |||||||||||||||||||||||||||||    
T  25167868 gttcacatgtttcttcttctttctctctgccttagt 25167833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 31976316 - 31976430
Alignment:
Q  1 tggtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtc 100  Q
    |||||||||||| ||| ||||| |||||||| ||||   |||||||||||||||  |||||||||| |||||||| | ||||||  ||||||| | ||||    
T  31976316 tggtcacatgaaccccgcacaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtc 31976415  T
Q  101 tatgtaacattttcc 115  Q
    |||||||||||||||    
T  31976416 tatgtaacattttcc 31976430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 230 - 369
Target Start/End: Complemental strand, 10990153 - 10990014
Alignment:
Q  230 tgcaattgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttca 329  Q
    ||||| ||||||||||||| || |||| | | ||| |||||||| | ||| ||||| |||| | |||||||| ||||| ||||||| |||||| | ||||    
T  10990153 tgcaaatgaaccaactattttgtatctgttagggcagctttggaggaacccttttgtgcacgagtcctcatttcggctaagttaaagctagaaggattca 10990054  T
Q  330 ctttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||||||| | || | ||||||||||||| ||||||||||    
T  10990053 ctttgttctcttgctgcttcttctttctcgctgccttagt 10990014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 230 - 369
Target Start/End: Original strand, 4263360 - 4263496
Alignment:
Q  230 tgcaattgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttca 329  Q
    |||||||||||||||||||| | ||||  |||| |   |||||| | ||| ||||||||||   ||||||||||||||||||||||||||| | ||||||    
T  4263360 tgcaattgaaccaactattccgtatctgccaagacaattttggaggaacccttttgagcacgggtcctcattccggctgagttaaaactagcaggcttca 4263459  T
Q  330 ctttgttcacctgtttcttcttctttctctctgccttagt 369  Q
     |||||| || ||   |||||||||| |||||||||||||    
T  4263460 ttttgtttacatg---cttcttctttttctctgccttagt 4263496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 31110776 - 31110679
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    ||||| |||||||| ||||   ||| |||||||||||  |||||||||| ||||||||   |||||| | ||||||||||||||||||||||||||||    
T  31110776 cacaagcacactttctcttttctctactcttctctcttcctaatgtatggggtgtacaaaggtgtatggaaataaaggatgtctatgtaacattttcc 31110679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 31953047 - 31952944
Alignment:
Q  16 cacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    |||||||||||||||| |||| ||||| |||||||||||  ||| || ||| |||||| | |  |||||  ||||||| | |||||||||||||||||||    
T  31953047 cacacaaacacactttctctttcatcttctcttctctcttcctagtgcatggggtgtagaaggatgtatgagaataaatggtgtctatgtaacattttcc 31952948  T
Q  116 ttta 119  Q
    ||||    
T  31952947 ttta 31952944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 11427688 - 11427796
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||| ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| | ||||||  ||||||||| ||||||    
T  11427688 gtcacgtggatcccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtcta 11427787  T
Q  103 tgtaacatt 111  Q
    |||| ||||    
T  11427788 tgtatcatt 11427796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 32869763 - 32869856
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| |  ||||| |||||||||| |||||||||| ||||    
T  32869763 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcatt 32869856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 17598639 - 17598732
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| | |||||| | |||||| | |||||||||| ||||    
T  17598639 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 17598732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 135 - 369
Target Start/End: Complemental strand, 37050225 - 37049990
Alignment:
Q  135 tcaaaagtatgaccattcttggctaaataaagactaaaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgca 233  Q
    |||||||||||||||| |||||| ||| || |||||||| |||||||||||||| |||||||| ||||||||||||||||||| || || ||||||||||    
T  37050225 tcaaaagtatgaccatacttggccaaacaacgactaaaa-gactactctctctatgaaaatttgaacaaaagtattggtattcccatatattctgttgca 37050127  T
Q  234 attgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaa-gcttcactt 332  Q
    ||||||||||||||| || |||| |||| ||||||||||| ||||| ||||| |||| | |||||||||||||||||||||||||||||| |||||||||    
T  37050126 attgaaccaactattttgtatctctcaaagcggctttggaggtacccttttgggcacgagtcctcattccggctgagttaaaactagaaaggcttcactt 37050027  T
Q  333 tgttcacctgtttcttcttctttctctctgccttagt 369  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  37050026 tgttcacatgtttcttcttctttttctctgccttagt 37049990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 29977966 - 29978065
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatttt 113  Q
    ||||||||| |||||||| |||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||||||||    
T  29977966 cccacacaagcacactttctctttcatcttctcttttctctcactaatgtatggggtgtacaagtgtgtataggaataaaagatatctatgtaacatttt 29978065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 29239967 - 29240072
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatttt 113  Q
    ||||||||| |||||||| |||| | |||||||||||||||  ||| || ||| |||||||| | |||||| |||||||||| |||||||||||||||||    
T  29239967 cccacacaagcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtctatgtaacatttt 29240066  T
Q  114 ccttta 119  Q
    ||||||    
T  29240067 ccttta 29240072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 23608317 - 23608413
Alignment:
Q  15 ccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    |||||||| |||||||| ||||  ||||||||||||||||  |||||| ||||||||||||||  ||||| ||||||||||||||||||||| ||||    
T  23608317 ccacacaagcacactttctcttttatctcctcttctctcttcctaatgcatgaggtgtacagggatgtatgggaataaaggatgtctatgtatcatt 23608413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 56300197 - 56300086
Alignment:
Q  1 tggtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtc 100  Q
    |||||| ||||||||  |||||||||||||| |||| | |||||||||||||||  |||||||||||| |||||| |  |||||  |||||||| |||||    
T  56300197 tggtcatatgaatcctgcacaaacacactttctctttcctctcctcttctctctttctaatgtatgagatgtacaagattgtatgagaataaagaatgtc 56300098  T
Q  101 tatgtaacattt 112  Q
    || |||||||||    
T  56300097 tacgtaacattt 56300086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 182 - 370
Target Start/End: Original strand, 16832082 - 16832271
Alignment:
Q  182 ctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgcaattgaaccaactattctgcatctatcaaggcggctttggaagtacca 280  Q
    ||||||| |||||||| |  |||||||||| |||||  || | ||||| ||||| |||||| |||||| || ||||  |||| | |||||||| | |||     
T  16832082 ctctctatgaaaatttgagtaaaagtattgatattcctagctattctgatgcaaatgaaccgactattatgtatctgccaagacagctttggaggcaccc 16832181  T
Q  281 ttttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagtt 370  Q
    |||||| |||   ||||||||||  ||||||||||  ||| | |||||||||||||||| || ||||| ||| |||||||||||||||||    
T  16832182 ttttgaacacgtgtcctcattccaactgagttaaagttagtaggcttcactttgttcacatgcttcttattccttctctctgccttagtt 16832271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 351
Target Start/End: Original strand, 24239788 - 24239955
Alignment:
Q  185 tctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgcaattgaaccaactattctgcatctatcaaggcggctttggaagtaccattt 283  Q
    |||| |||||||| ||||||||||||| ||||| | | | |||| ||| |||||| ||||||||| || ||||  ||||   ||||| || ||||| |||    
T  24239788 tctatgaaaatttgaacaaaagtattgatattccctgttattcttttgtaattgagccaactattatgtatctgccaagatagcttttgaggtacccttt 24239887  T
Q  284 tgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttctt 351  Q
    || ||||   |||||||||||||||||||||| |||| | |||||||||| |||||||  ||||||||    
T  24239888 tgggcacgggtcctcattccggctgagttaaagctagtaggcttcactttattcacctacttcttctt 24239955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 50052443 - 50052345
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcct 116  Q
    ||||| |||||||| |||| | |||||||||||||||  ||| || || |||||||||   |||||| |||||||||| ||||||||||||||||||||    
T  50052443 cacaagcacactttctctttcctctcctcttctctcttcctagtgcataaggtgtacaaaggtgtatgggaataaagggtgtctatgtaacattttcct 50052345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 19852547 - 19852474
Alignment:
Q  296 ctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||||||||| |||||||||||||| | || ||||||||| ||| || |||||||||||| |||||||||||||    
T  19852547 ctcattccgggtgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgccttagt 19852474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 142 - 309
Target Start/End: Original strand, 18522202 - 18522369
Alignment:
Q  142 tatgaccattcttggctaaataaagactaaaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgcaattgaac 240  Q
    |||||||||||||||| ||| |||  |||| | |||||  ||||||| |||||||| ||||||||||||  ||||| |  || ||||| ||||| |||||    
T  18522202 tatgaccattcttggccaaacaaaagctaata-gactatactctctatgaaaatttgaacaaaagtattcatattcccgaatattctgctgcaactgaac 18522300  T
Q  241 caactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctga 309  Q
    ||||||||||  ||||  |||| || ||||||| | | | ||||||||||  |||||||||||||||||    
T  18522301 caactattctatatctgccaagtcgactttggaggcatccttttgagcacggatcctcattccggctga 18522369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 31910264 - 31910376
Alignment:
Q  5 cacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatg 104  Q
    |||||| | ||| ||||| |||||||| ||||   |||| ||||||||||  |||||||||| | |||||| | |||||| |||||||| | ||||||||    
T  31910264 cacatggaccccgcacaagcacactttctcttttctctcatcttctctcttcctaatgtatgggatgtacaagagtgtatgggaataaatggtgtctatg 31910363  T
Q  105 taacattttcctt 117  Q
    |||||||||||||    
T  31910364 taacattttcctt 31910376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 28480287 - 28480184
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatttt 113  Q
    |||||||||||||||||| || | |||||||||||||||||  ||| || ||||| |||||| |  |||||    ||||||| |||||||||||||||||    
T  28480287 cccacacaaacacactttctccttcatctcctcttctctcttcctagtgcatgagttgtacaaggatgtattcttataaagggtgtctatgtaacatttt 28480188  T
Q  114 cctt 117  Q
    ||||    
T  28480187 cctt 28480184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 28481162 - 28481059
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatttt 113  Q
    |||||||||||||||||| || | |||||||||||||||||  ||| || ||||| |||||| |  |||||    ||||||| |||||||||||||||||    
T  28481162 cccacacaaacacactttctccttcatctcctcttctctcttcctagtgcatgagttgtacaaggatgtattcttataaagggtgtctatgtaacatttt 28481063  T
Q  114 cctt 117  Q
    ||||    
T  28481062 cctt 28481059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 28482037 - 28481934
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatttt 113  Q
    |||||||||||||||||| || | |||||||||||||||||  ||| || ||||| |||||| |  |||||    ||||||| |||||||||||||||||    
T  28482037 cccacacaaacacactttctccttcatctcctcttctctcttcctagtgcatgagttgtacaaggatgtattcttataaagggtgtctatgtaacatttt 28481938  T
Q  114 cctt 117  Q
    ||||    
T  28481937 cctt 28481934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 16593826 - 16593899
Alignment:
Q  296 ctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||||||||||| |||||||||||| | || ||||||||| ||| || |||| ||||||| |||||||||||||    
T  16593826 ctcattccggctaagttaaaactagcaggcctcactttgtgcacgtgcttctacttctttttctctgccttagt 16593899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 41236432 - 41236525
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| | |||||| |||||||||| |||||||||| ||||    
T  41236432 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 41236525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 41823952 - 41824064
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    |||||||| | ||| ||||| |||||||| ||||   |||| ||||||||||  |||||| ||||||||||||   ||||||  ||||||| | ||||||    
T  41823952 gtcacatggaccccgcacaagcacactttctcttttctctcttcttctctcttcctaatgcatgaggtgtacaaaggtgtatgagaataaatggtgtcta 41824051  T
Q  103 tgtaacattttcc 115  Q
    |||||||||||||    
T  41824052 tgtaacattttcc 41824064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 47104625 - 47104685
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtac 74  Q
    |||||||||||||||||| |||| |||||||||||||||||   ||||| |||||||||||    
T  47104625 cccacacaaacacactttctctttcatctcctcttctctcttcttaatgcatgaggtgtac 47104685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 50526164 - 50526088
Alignment:
Q  40 tctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcct 116  Q
    |||||||||||||||  ||| || ||| |||||||| | |||||||| |||||||| ||| ||||||||||||||||    
T  50526164 tctcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacattttcct 50526088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 6034114 - 6034222
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||| ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| | ||||||  ||||||| | ||||||    
T  6034114 gtcacgtggatcccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaaaggtgtcta 6034213  T
Q  103 tgtaacatt 111  Q
    |||| ||||    
T  6034214 tgtatcatt 6034222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 40574852 - 40574959
Alignment:
Q  6 acatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgt 105  Q
    ||||| |||||  |||| |||||||| ||||   |||||||||||||||  ||||| |||| |||||||| | ||||||  ||||||| | ||||||| |    
T  40574852 acatggatcccgaacaagcacactttctcttttctctcctcttctctcttcctaatatatggggtgtacaagggtgtatgagaataaaaggtgtctatct 40574951  T
Q  106 aacatttt 113  Q
    ||||||||    
T  40574952 aacatttt 40574959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 42044382 - 42044289
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| | |||||| | |||||| | |||||||| |||||||||| ||||    
T  42044382 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataaagggtgtctatgtatcatt 42044289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 48183064 - 48182971
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||   ||||| ||| |||||||| | ||||||  ||||||||| |||||||||| ||||    
T  48183064 cacaagcacactttctcttttctctcctcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 48182971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 29589759 - 29589655
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatttt 113  Q
    |||||||||  ||||||| |||| | ||| |||||||||||  |||||  |||||||||||| | ||||||   | |||| | ||||||||||| |||||    
T  29589759 cccacacaagtacactttctctttcttcttctcttctctcttcctaatacatgaggtgtacaagagtgtatgcaattaaaaggtgtctatgtaatatttt 29589660  T
Q  114 ccttt 118  Q
    |||||    
T  29589659 ccttt 29589655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 135 - 369
Target Start/End: Complemental strand, 37344843 - 37344609
Alignment:
Q  135 tcaaaagtatgaccattcttggctaaataaagactaaaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgca 233  Q
    |||| |||||||||||||||||| ||| || ||||| || ||||||||||| ||||||||||| ||||||| ||||||||||| ||||| || || ||||    
T  37344843 tcaagagtatgaccattcttggccaaacaacgactagaa-gactactctctataagaaaatttgaacaaaaatattggtattcccagatattatgctgca 37344745  T
Q  234 attgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcacttt 333  Q
    | |||| |||||||| || || | ||||||||||||||||  |||| ||||| |||| ||||||||||||||||||||||||||||||| | ||||||||    
T  37344744 aatgaatcaactattatgtatatgtcaaggcggctttggagatacccttttgggcacgaatcctcattccggctgagttaaaactagaatgattcacttt 37344645  T
Q  334 gttcacctgtttcttcttctttctctctgccttagt 369  Q
    ||||||||||||||||||||||||||||||||||||    
T  37344644 gttcacctgtttcttcttctttctctctgccttagt 37344609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 171 - 369
Target Start/End: Complemental strand, 31092505 - 31092306
Alignment:
Q  171 aaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgcaattgaaccaactattctgcatctatcaaggcggctt 269  Q
    |||||||||| ||||||| |||||||| |||||||| ||||   ||| | ||| ||||  ||||| || ||||||||||||| ||||  |||| || |||    
T  31092505 aaaagactaccctctctatgaaaatttgaacaaaagcattgacgttcccggatattctaatgcaaatggaccaactattctgtatctggcaagacgactt 31092406  T
Q  270 tggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||| ||||| ||||| |||| | |||||||||||||||||||||| |||||| || ||||||| ||||| || ||||||||||||||||||| ||||||    
T  31092405 tggaggtacccttttgggcacgagtcctcattccggctgagttaaatctagaaggcatcactttattcacgtgattcttcttctttctctctgtcttagt 31092306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 184 - 369
Target Start/End: Original strand, 14296202 - 14296388
Alignment:
Q  184 ctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgcaattgaaccaactattctgcatctatcaaggcggctttggaagtaccatt 282  Q
    ||||| |||||||| ||||||||||||  ||||| ||  | |||| |||||||||||||||||||| || ||||  ||||||  ||||||| ||||| ||    
T  14296202 ctctacgaaaatttgaacaaaagtatttatattcccacttattctattgcaattgaaccaactattatgtatctgccaaggcatctttggaggtaccctt 14296301  T
Q  283 ttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||  ||| | | |||||||||||||||||||| |||| | |||||| |||||||| ||| |||||||||||||||||| |||||||    
T  14296302 ttggacacgagtgctcattccggctgagttaaagctagtaggcttcattttgttcatctgcttcttcttctttctctctaccttagt 14296388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 238 - 367
Target Start/End: Original strand, 18811704 - 18811833
Alignment:
Q  238 aaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttc 337  Q
    |||||||||||||| |||| ||||||  |||||||| |  || ||||| ||||   |||||||||||||||||||||| ||| ||||||||||||| | |    
T  18811704 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaagcttcactttatgc 18811803  T
Q  338 acctgtttcttcttctttctctctgcctta 367  Q
    ||||| ||||||||||||||||||||||||    
T  18811804 acctgcttcttcttctttctctctgcctta 18811833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 2533208 - 2533306
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcct 116  Q
    ||||| |||||||||||||  ||||||||||||||||  | |||||||| |||||||| | |||||| |||||||||| ||| ||| ||||||||||||    
T  2533208 cacaagcacactttttcttttatctcctcttctctcttcccaatgtatggggtgtacaagggtgtatgggaataaagggtgtatatataacattttcct 2533306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 7465754 - 7465657
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||||||| |||||||| ||||  ||||| ||||||||||  |||||| |||||||||||| | |||||| |||||||||| |||||||||| ||||    
T  7465754 cccacacaagcacactttctcttttatctcttcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 7465657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 28863540 - 28863633
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||  ||||||||||||||||  |||||| |||||||||||| | |||||| |||||||||| |||||||||| ||||    
T  28863540 cacaagcacactttctcttttatctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 28863633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 44152003 - 44152108
Alignment:
Q  9 tgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaac 108  Q
    |||||||||||||| |||||||| |||| |||||||||||||||||  |||||| ||||| | |||| | ||||||  ||||||| | ||| ||||||||    
T  44152003 tgaatcccacacaagcacactttctctttcatctcctcttctctcttcctaatgcatgagatatacaagggtgtatgcgaataaaaggtgtttatgtaac 44152102  T
Q  109 attttc 114  Q
    ||||||    
T  44152103 attttc 44152108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 17473090 - 17473198
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||| ||||| |||||||| ||||   |||||||||||||||  |||||| |||||||||||| | |||||| |||||||||| ||||||    
T  17473090 gtcacgtggatcccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtcta 17473189  T
Q  103 tgtaacatt 111  Q
    |||| ||||    
T  17473190 tgtatcatt 17473198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 20700906 - 20700997
Alignment:
Q  24 cacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    |||||||| |||| | |||||||||||||||  ||| || ||| |||||||| | |||||| |||||||||| |||||||||||||||||||    
T  20700906 cacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtaacattttcc 20700997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 42257265 - 42257376
Alignment:
Q  5 cacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatg 104  Q
    |||||| | ||| ||||| |||||||| ||||   ||||||||||| |||  |||||||||| |||||||| | |||||||| |||||||| ||||||||    
T  42257265 cacatggaccccgcacaagcacactttctcttttctctcctcttctttcttcctaatgtatggggtgtacaagagtgtatagaaataaagggtgtctatg 42257364  T
Q  105 taacattttcct 116  Q
    ||| ||||||||    
T  42257365 taatattttcct 42257376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 17823869 - 17823971
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatttt 113  Q
    |||| |||| |||||||| |||| |||||| ||||||||||  | ||| |||| |||||||| | ||||||   ||||||||||||||||||||||||||    
T  17823869 cccatacaagcacactttctctttcatctcatcttctctcttccaaatatatggggtgtacaagggtgtatgtaaataaaggatgtctatgtaacatttt 17823968  T
Q  114 cct 116  Q
    |||    
T  17823969 cct 17823971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 19930835 - 19930742
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    |||||||||||||| ||||   |||||||||||||||  |||||| |||||||||||| | |||||| |||||||| | |||||||||| ||||    
T  19930835 cacaaacacactttctcttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcatt 19930742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 3154211 - 3154303
Alignment:
Q  1 tggtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaa 93  Q
    |||||||||| ||||| | |||||||| ||| |||| ||||||||||| ||||||||||||| | | ||| |||| |||| ||||||||||||    
T  3154211 tggtcacatggatcccgcccaaacacagtttctctttcatctcctcttttctctcactaatgcacggggtatacaagtgtctataggaataaa 3154303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 40613930 - 40613819
Alignment:
Q  5 cacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatg 104  Q
    |||||| | ||| ||||| |||||||| ||||   |||||| |||| |||   ||||||||| |||||||| | |||||| |||||||||| ||||||||    
T  40613930 cacatggaccccgcacaagcacactttctcttttctctcctattctttcttcataatgtatggggtgtacaagggtgtatgggaataaagggtgtctatg 40613831  T
Q  105 taacattttcct 116  Q
    ||||||||||||    
T  40613830 taacattttcct 40613819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 355
Target Start/End: Original strand, 8413844 - 8413933
Alignment:
Q  266 gctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttcttt 355  Q
    |||||||| ||||| ||||||||||   |||||||||||| |||||| || |||| | |||||||||||||| |||| ||||||| ||||    
T  8413844 gctttggaggtacccttttgagcacgggtcctcattccggttgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttt 8413933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 17820023 - 17819962
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtaca 75  Q
    |||||||||||||| ||| |||| |||||||||||||||||  |||||| ||||||||||||    
T  17820023 cccacacaaacacattttctctttcatctcctcttctctcttcctaatgcatgaggtgtaca 17819962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 36168943 - 36169018
Alignment:
Q  40 tctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    |||||| ||||||||  |||||||||| |||||||| | ||||||  ||||||||| ||| |||||||||||||||    
T  36168943 tctcctattctctcttcctaatgtatggggtgtacaagagtgtatgagaataaagggtgtttatgtaacattttcc 36169018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 336
Target Start/End: Complemental strand, 18693230 - 18693124
Alignment:
Q  230 tgcaattgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttca 329  Q
    ||||||||||||||||||| || |||| ||||| |  ||||||| | ||| ||||  |||||  |||||||||||||| ||||||| |||| |  |||||    
T  18693230 tgcaattgaaccaactattttgtatctgtcaagacaactttggaggaacccttttaggcacaggtcctcattccggcttagttaaagctagcagacttca 18693131  T
Q  330 ctttgtt 336  Q
    |||||||    
T  18693130 ctttgtt 18693124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 13438428 - 13438521
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| |  ||||| |||||||||| |||||||||| ||||    
T  13438428 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcatt 13438521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 21301516 - 21301415
Alignment:
Q  17 acacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcct 116  Q
    ||||||||||||||| ||||  |||| ||||||| |||  ||| || |||||||||||| | |||||| | |||||||| ||| ||| ||||||||| ||    
T  21301516 acacaaacacactttctcttttatcttctcttctttcttcctagtgcatgaggtgtacatgagtgtatggaaataaagggtgtgtatctaacatttttct 21301417  T
Q  117 tt 118  Q
    ||    
T  21301416 tt 21301415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 33436115 - 33436029
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatg 104  Q
    ||||| |||||||| |||| | |||| ||||||||||  |||||| |||||||||||| | ||||||  ||||||| | ||||||||    
T  33436115 cacaagcacactttctctttcctctcatcttctctcttcctaatgcatgaggtgtacaagggtgtatgagaataaaaggtgtctatg 33436029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 9058565 - 9058642
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaagg 95  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| | |||||| ||||||||||    
T  9058565 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaagg 9058642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 8e-41; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 135 - 327
Target Start/End: Original strand, 32278607 - 32278794
Alignment:
Q  135 tcaaaagtatgaccattcttggctaaataaagactaaaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgca 233  Q
    ||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||  | |||     |||||||||||| || || |||||||    
T  32278607 tcaaaagtatgaccattcttggccaaacaacgactaaaa-gactactctctctaagaaaattagagcaa-----ttggtattctcatatattttgttgca 32278700  T
Q  234 attgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagctt 327  Q
    |||||||| ||||||||| |||| |||||||||||||||| ||||| ||||| | || |||| |||||||||||||||||||||||||| ||||    
T  32278701 attgaacccactattctgtatctgtcaaggcggctttggaggtacccttttgggaacgaatcttcattccggctgagttaaaactagaaggctt 32278794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 6260033 - 6259914
Alignment:
Q  1 tggtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtc 100  Q
    |||||||||| | | |||| || |||||||| |||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||    
T  6260033 tggtcacatggacctcacagaagcacactttctctttcatctcctcttctctctcactaatgtatgggatgtacaagtgtgtataggaataaaggatatc 6259934  T
Q  101 tatgtaacattttcctttaa 120  Q
    ||||||||||||||||||||    
T  6259933 tatgtaacattttcctttaa 6259914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 192 - 367
Target Start/End: Original strand, 788228 - 788403
Alignment:
Q  192 aaatttcaacaaaagtattggtattctcagat-ttctgttgcaattgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcac 290  Q
    |||||| ||||||||| ||||||||||| ||| |||||||||||||||||||| ||||||  || | |||||||||||||||| | ||| ||||| ||||    
T  788228 aaatttgaacaaaagt-ttggtattctccgatattctgttgcaattgaaccaattattctatatatgtcaaggcggctttggaggaacccttttgggcac 788326  T
Q  291 aaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgcctta 367  Q
     | |||||||  || ||||||||||  ||||| |||||| |||||||| ||| ||||||||||||||||||||||||    
T  788327 gagtcctcatagcgtctgagttaaagttagaaggcttcattttgttcatctgcttcttcttctttctctctgcctta 788403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 184 - 369
Target Start/End: Complemental strand, 35811305 - 35811120
Alignment:
Q  184 ctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgcaattgaaccaactattctgcatctatcaaggcggctttggaagtaccatt 282  Q
    ||||| |||||||| ||||||||||||||||||| || || || |||||||||||||||||||||| |  || | ||||||| ||||||| | |||||||    
T  35811305 ctctatgaaaatttgaacaaaagtattggtattcccaaatattatgttgcaattgaaccaactattttatatttgtcaaggc-gctttggtaataccatt 35811207  T
Q  283 ttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||  ||| | ||||||||||  |||| |||||  |||||  ||| ||||| |||||||| |||||||||| |||||||| ||||||    
T  35811206 ttggacacgagtcctcattccaactgaattaaagttagaacactttactttattcacctgcttcttcttctatctctctgtcttagt 35811120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 226 - 360
Target Start/End: Complemental strand, 36868425 - 36868291
Alignment:
Q  226 ctgttgcaattgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagc 325  Q
    |||||||  |||||||||||||| || |||| ||||||  |||||||| | ||| |||||  |||    ||||||||||||||||||||| |||||| ||    
T  36868425 ctgttgcctttgaaccaactattatgtatctgtcaaggtagctttggaggaacccttttggacacgggccctcattccggctgagttaaagctagaaggc 36868326  T
Q  326 ttcactttgttcacctgtttcttcttctttctctc 360  Q
    |||||||| ||||| || |||||||||||||||||    
T  36868325 ttcactttattcacttgcttcttcttctttctctc 36868291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 230 - 369
Target Start/End: Complemental strand, 19215511 - 19215372
Alignment:
Q  230 tgcaattgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttca 329  Q
    |||||||  ||||||||||||| ||||  |||||| | |||| | ||||| ||||| || |   ||||||||| |||||||||||| |||||  || |||    
T  19215511 tgcaattcgaccaactattctgtatctgccaaggcagttttgaaggtacccttttgggctcgggtcctcattcgggctgagttaaagctagacggcatca 19215412  T
Q  330 ctttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    ||||||||||||| ||||||||| ||||||||| ||||||    
T  19215411 ctttgttcacctgcttcttcttcattctctctgtcttagt 19215372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 6679766 - 6679879
Alignment:
Q  1 tggtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtc 100  Q
    |||||||||| | ||| |||||||||| ||| ||||   |||||||||||||||  |||||||||  |||||||| | ||||||   |||||| ||||||    
T  6679766 tggtcacatggaccccgcacaaacacattttctcttttctctcctcttctctcttcctaatgtatagggtgtacaagggtgtatgacaataaatgatgtc 6679865  T
Q  101 tatgtaacattttc 114  Q
    ||||||||||||||    
T  6679866 tatgtaacattttc 6679879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 26720588 - 26720700
Alignment:
Q  5 cacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatg 104  Q
    |||||| ||||| ||||| |||||||| ||||   ||| |||||||||||  |||||||||| |||||||  | ||||||  ||||||| |||||||||     
T  26720588 cacatggatcccgcacaagcacactttctcttttctcttctcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaatgatgtctata 26720687  T
Q  105 taacattttcctt 117  Q
    |||||||||||||    
T  26720688 taacattttcctt 26720700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 26990337 - 26990449
Alignment:
Q  5 cacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatg 104  Q
    |||||| ||||| ||||| |||||||| ||||   ||| |||||||||||  |||||||||| |||||||  | ||||||  ||||||| |||||||||     
T  26990337 cacatggatcccgcacaagcacactttctcttttctcttctcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaatgatgtctata 26990436  T
Q  105 taacattttcctt 117  Q
    |||||||||||||    
T  26990437 taacattttcctt 26990449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 15409603 - 15409528
Alignment:
Q  40 tctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    |||||||||||||||  |||||||||| |||||||| | ||||||  ||||||||| ||| |||||||||||||||    
T  15409603 tctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgcgaataaagggtgtttatgtaacattttcc 15409528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 18520899 - 18520806
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||  ||||||||||||||||  |||||| |||||||||||| | ||||||   |||||||| |||||||||| ||||    
T  18520899 cacaagcacactttctcttttatctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgaaaataaagggtgtctatgtatcatt 18520806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 36732957 - 36732872
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctat 103  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| |||||||||||| | |||||| |||||||||| |||||||    
T  36732957 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctat 36732872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 31009058 - 31009171
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||| ||||| |||||||| | || | ||| |||||||||||  ||| || ||| ||||||||   ||||||  ||||||||| ||||||    
T  31009058 gtcacgtggatcccgcacaagcacactttctatttcctcttctcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggtgtcta 31009157  T
Q  103 tgtaacattttcct 116  Q
    ||||||||||||||    
T  31009158 tgtaacattttcct 31009171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 35943913 - 35943812
Alignment:
Q  12 atcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||||||||| |||||||| |||| | ||||||||| |||||  ||| || ||| |||||||| | |||||| | ||||||   |||||||||||||||    
T  35943913 atcccacacaagcacactttctctttcctctcctcttttctcttcctagtgcatggggtgtacaagggtgtatggaaataaaatgtgtctatgtaacatt 35943814  T
Q  112 tt 113  Q
    ||    
T  35943813 tt 35943812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 14831884 - 14831992
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||| ||||| |||||||| | ||   |||||||||||||||  |||||| ||| |||||||| |  ||||| |||||||||| ||||||    
T  14831884 gtcacgtggatcccgcacaagcacactttcttttttttctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtcta 14831983  T
Q  103 tgtaacatt 111  Q
    |||| ||||    
T  14831984 tgtatcatt 14831992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 33149668 - 33149560
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||| ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| | |||||   ||||||||| ||||||    
T  33149668 gtcacgtggatcccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaagggtgtcta 33149569  T
Q  103 tgtaacatt 111  Q
    |||| ||||    
T  33149568 tgtatcatt 33149560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 16327984 - 16328041
Alignment:
Q  16 cacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgta 73  Q
    ||||||| ||||||||||||| ||| | |||||||||||| ||||| |||| ||||||    
T  16327984 cacacaagcacactttttctttcattttctcttctctctccctaatatatggggtgta 16328041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 289
Target Start/End: Original strand, 37307134 - 37307251
Alignment:
Q  173 aagactactctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgcaattgaaccaactattctgcatctatcaaggcggctttg 271  Q
    |||||||| ||||||  |||||||| ||||||||||||| ||||  ||| | |||| ||| |||||||||||||||| || ||||  |||| | |||||     
T  37307134 aagactacactctctgtgaaaatttgaacaaaagtattgatatttccagttattcttttgtaattgaaccaactattatgtatctgccaagacagcttta 37307233  T
Q  272 gaagtaccattttgagca 289  Q
     | ||||| |||||||||    
T  37307234 aaggtacccttttgagca 37307251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 40145492 - 40145585
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| | |||||||||| | || |||  ||||||||| |||||||||| ||||    
T  40145492 cacaagcacactttctcttttctctcctcttctctcttcctaatgcacgaggtgtacaagggtatatgagaataaagggtgtctatgtatcatt 40145585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 3921273 - 3921181
Alignment:
Q  25 acactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcctt 117  Q
    ||||||| |||| | ||| |||||||||||  ||||| |||| |||||||| | ||||||   | |||| | |||||||||||||||||||||    
T  3921273 acactttctctttcttcttctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcctt 3921181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 37307257 - 37307297
Alignment:
Q  329 actttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    ||||||||||| || |||||||||||||||||| |||||||    
T  37307257 actttgttcacatgcttcttcttctttctctctaccttagt 37307297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 135 - 300
Target Start/End: Complemental strand, 34548104 - 34547939
Alignment:
Q  135 tcaaaagtatgaccattcttggctaaataaagactaaaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgca 233  Q
    |||||||||||||||||||||||  || || |||||||| |||||||||||||| ||||||||  |||||||||||||||||||||||| ||||||||||    
T  34548104 tcaaaagtatgaccattcttggcctaacaacgactaaaa-gactactctctctatgaaaatttgcacaaaagtattggtattctcagatattctgttgca 34548006  T
Q  234 attgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcat 300  Q
     ||||||||||||||||| |||   ||| | || |||||| ||||| |||||||||||| |||||||    
T  34548005 cttgaaccaactattctgtatcggccaaagaggttttggaggtacccttttgagcacaagtcctcat 34547939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 262 - 354
Target Start/End: Original strand, 19407866 - 19407958
Alignment:
Q  262 ggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctt 354  Q
    |||||||||||| ||||| ||||| ||||   |||||||||||||||||||||| |||||| |  |||||||||||||||| |||||||||||    
T  19407866 ggcggctttggaggtacccttttgggcacgggtcctcattccggctgagttaaagctagaaggaatcactttgttcacctgcttcttcttctt 19407958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 234 - 369
Target Start/End: Original strand, 26449531 - 26449666
Alignment:
Q  234 attgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcacttt 333  Q
    |||||||||||||||  | || | || |||| | |||||| ||||| |||||  ||| | ||||||||||||||||| | || |||| | |||||||| |    
T  26449531 attgaaccaactatttggtatatgtcgaggcagttttggaggtacccttttggacacgagtcctcattccggctgagctgaagctagtaggcttcactct 26449630  T
Q  334 gttcacctgtttcttcttctttctctctgccttagt 369  Q
    ||||||||| ||||||| ||||||||||||||||||    
T  26449631 gttcacctgcttcttctgctttctctctgccttagt 26449666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 31735949 - 31736060
Alignment:
Q  5 cacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatg 104  Q
    |||||| ||||| ||||| |||||||| ||||   |||||||||||||||  |||||||||| |||||||| | |||||| |||||||| | | |||||     
T  31735949 cacatggatcccgcacaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaaaggtatctatc 31736048  T
Q  105 taacattttcct 116  Q
    ||||||||||||    
T  31736049 taacattttcct 31736060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 35522955 - 35523061
Alignment:
Q  12 atcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| ||||| |||||||| ||||   |||| ||||||||||  |||||||||| |||||||| | |||||| |||||||| | ||| |||||||||||    
T  35522955 atcccgcacaagcacactttctcttttctctcttcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtttatgtaacatt 35523054  T
Q  112 ttccttt 118  Q
    |||||||    
T  35523055 ttccttt 35523061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 4999529 - 4999436
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    |||||||||||||| ||||  ||||||||||||||||  |||||| ||| |||||||| | ||||||  ||||||| | |||||||||| ||||    
T  4999529 cacaaacacactttctcttttatctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaaaggtgtctatgtatcatt 4999436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 16374856 - 16374743
Alignment:
Q  1 tggtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtc 100  Q
    ||||||| || ||| ||||||| ||||| || |||| |||||| | ||||||||  ||||||||||  |||||||   ||||||  ||||||||| ||||    
T  16374856 tggtcacgtggatctcacacaagcacacattctctttcatctctttttctctcttcctaatgtatggagtgtacaaaggtgtatgagaataaagggtgtc 16374757  T
Q  101 tatgtaacattttc 114  Q
    ||||||||||||||    
T  16374756 tatgtaacattttc 16374743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 19329927 - 19330020
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| | |||||| |||||||||| |||||||||| ||||    
T  19329927 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 19330020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 46033794 - 46033719
Alignment:
Q  40 tctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    ||||||||||||| |  |||||||||| |||||||| | ||||||  ||||||| | |||||||||||||||||||    
T  46033794 tctcctcttctctattcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttcc 46033719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 46374800 - 46374741
Alignment:
Q  57 ctaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcct 116  Q
    |||||||||| |||||||| | |||||| |||||||| | ||||||||||||||||||||    
T  46374800 ctaatgtatggggtgtacaagggtgtatgggaataaatggtgtctatgtaacattttcct 46374741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 8080398 - 8080305
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  ||| || ||| |||||||| | |||||| |||||||||| |||||||||| ||||    
T  8080398 cacaagcacactttctcttttctctcctcttctctcttcctattgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 8080305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 16099785 - 16099673
Alignment:
Q  135 tcaaaagtatgaccattcttggctaaataaagactaaaaagactactctctctaagaaaatttcaacaaaagtattggtattctc-agatttctgttgca 233  Q
    |||||||||||||| ||||| || ||| || |||||||| ||| |||||||  ||||| |||| ||||||| |||| |||||| | | |||| |||||||    
T  16099785 tcaaaagtatgacctttcttagcaaaacaacgactaaaa-gaccactctct--aagaatatttgaacaaaaatatttgtattccctatattt-tgttgca 16099690  T
Q  234 attgaaccaactattct 250  Q
    |||||||||||||||||    
T  16099689 attgaaccaactattct 16099673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 33191332 - 33191268
Alignment:
Q  305 gctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    ||||||||||| |||| | ||||||||||| |||| |||||||||||| || ||||||| |||||    
T  33191332 gctgagttaaagctagcaggcttcactttgctcacatgtttcttcttcattttctctgctttagt 33191268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 21234473 - 21234584
Alignment:
Q  5 cacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatg 104  Q
    |||||| | ||| ||||| |||| ||| |||| | |||||| | ||||||  |||||||||| ||||||||   ||||||  ||||||| | ||||||||    
T  21234473 cacatgtaccccgcacaagcacattttctcttacctctcctttcctctcttcctaatgtatggggtgtacaatggtgtatgagaataaaaggtgtctatg 21234572  T
Q  105 taacattttcct 116  Q
    ||||||||||||    
T  21234573 taacattttcct 21234584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 26296751 - 26296826
Alignment:
Q  40 tctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    |||||||||||||||   |||||||||||||||||| | |||||| | |||| | | |||||| ||||||||||||    
T  26296751 tctcctcttctctcttcttaatgtatgaggtgtacaagggtgtatggaaatatatggtgtctacgtaacattttcc 26296826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 41423782 - 41423864
Alignment:
Q  33 tcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    |||| |||||||||||||||||  ||| || ||| ||||||||   ||||||  ||||||||| ||| |||||||||||||||    
T  41423782 tctttcatctcctcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggtgtttatgtaacattttcc 41423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 7389474 - 7389566
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   ||||||  |||||||  |||||  ||| |||||||||| |||||| ||||||||||||||||||||| ||||    
T  7389474 cacaagcacactttctcttttctctcctactctctcttcctaatacatggggtgtacagg-gtgtatgggaataaaggatgtctatgtatcatt 7389566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 18207255 - 18207300
Alignment:
Q  9 tgaatcccacacaaacacactttttcttgcatctcctcttctctct 54  Q
    |||| ||||||||| |||||||| |||| |||||||||||||||||    
T  18207255 tgaaccccacacaagcacactttctctttcatctcctcttctctct 18207300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 38837302 - 38837395
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| | |||||| | |||||| | |||||||| |||||||||| ||||    
T  38837302 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataaagggtgtctatgtatcatt 38837395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 32045942 - 32046018
Alignment:
Q  38 catctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttc 114  Q
    |||||| ||||||||||  | ||| |||||| |||||| | ||||||   ||||||| |||||||||||||||||||    
T  32045942 catctcatcttctctctttcaaatatatgagatgtacaagggtgtatgtaaataaagaatgtctatgtaacattttc 32046018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 32564441 - 32564341
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcctt 117  Q
    |||||| ||||||| |||| | ||| |||||||||||  |||||  |||||||||||| | ||||||   | ||||  ||||||||||||||| ||||||    
T  32564441 cacaaatacactttctctttcttcttctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaatatgtctatgtaacatcttcctt 32564342  T
Q  118 t 118  Q
    |    
T  32564341 t 32564341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 171 - 369
Target Start/End: Original strand, 13061893 - 13062092
Alignment:
Q  171 aaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagattt-ctgttgcaattgaaccaactattctgcatctatcaaggcggctt 269  Q
    |||||||||| ||||||| |||||||| ||||||||||||   |||| ||  | | || ||||||||| ||||| ||||||| || | ||||||||||||    
T  13061893 aaaagactaccctctctatgaaaatttgaacaaaagtattaacattcccatctatacttttgcaattggaccaattattctgtatttgtcaaggcggctt 13061992  T
Q  270 tggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||| ||||  |||| |||||   |||||||| ||||||||||||| ||| || || |||||||||||||||| |||||||||||| |||||| ||||||    
T  13061993 tggaggtactcttttcagcacgggtcctcatttcggctgagttaaagctaaaaggcatcactttgttcacctgcttcttcttctttttctctgtcttagt 13062092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 145 - 346
Target Start/End: Complemental strand, 14344267 - 14344068
Alignment:
Q  145 gaccattcttggctaaataaagactaaaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgcaattgaaccaa 243  Q
    ||||||||||||| ||| || |||||||| ||| ||||||||||| |||| || ||||||||||||| ||||| ||||| || | |||||||||| ||||    
T  14344267 gaccattcttggccaaacaacgactaaaa-gaccactctctctaaaaaaaattgaacaaaagtattgatattcccagatattttattgcaattga-ccaa 14344170  T
Q  244 ctattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgt 343  Q
    ||||  || |||| ||||| || ||||||| ||||| |||||  ||| | || ||||||||  |||||||||||||||| ||||||||||||||||||||    
T  14344169 ctata-tgtatctgtcaagtcgactttggaggtacccttttggacacgagtcatcattccgattgagttaaaactagaaggcttcactttgttcacctgt 14344071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 230 - 355
Target Start/End: Complemental strand, 3374432 - 3374307
Alignment:
Q  230 tgcaattgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttca 329  Q
    ||||||| |||||||||||||| | ||  |||||| ||||||||  |||| ||||| |||||  |||||||||||||||||||||| ||||   ||||||    
T  3374432 tgcaattaaaccaactattctgtagcttccaaggcagctttggagctacccttttgggcacatgtcctcattccggctgagttaaatctagccggcttca 3374333  T
Q  330 ctttgttcacctgtttcttcttcttt 355  Q
    |||||||||| || ||||||||||||    
T  3374332 ctttgttcacttgcttcttcttcttt 3374307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 231 - 369
Target Start/End: Original strand, 17114707 - 17114844
Alignment:
Q  231 gcaattgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcac 330  Q
    ||||||||||||||||||||  | ||  |||||| |||||||| ||||| |||||  ||    ||||||||| ||| |||||||| |||| | |||||||    
T  17114707 gcaattgaaccaactattctatagctg-caaggccgctttggaggtacccttttggacatgggtcctcattctggcagagttaaagctagcaggcttcac 17114805  T
Q  331 tttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  17114806 tttgttcacatgtttcttcttctttctctctgtcttagt 17114844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 32813315 - 32813429
Alignment:
Q  1 tggtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtc 100  Q
    |||||||||| | ||| ||||| |||||||| ||||   |||||||||||||||  |||||||||| |||||||| | |||||| |||||||| | ||||    
T  32813315 tggtcacatggaccccgcacaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtc 32813414  T
Q  101 tatgtaacattttcc 115  Q
    |||||||||||||||    
T  32813415 tatgtaacattttcc 32813429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 224 - 369
Target Start/End: Original strand, 50903467 - 50903612
Alignment:
Q  224 ttctgttgcaattgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaa 323  Q
    |||| ||||||| |||||||||| || | || |  |||| |||||||||| |||||  |||| ||||   |||||||| |||||||||| || |||| |     
T  50903467 ttctcttgcaatggaaccaactaatcggtatatgccaagtcggctttggaggtaccgctttgggcacgggtcctcatttcggctgagttgaagctagtag 50903566  T
Q  324 gcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  50903567 gcttcactttgttcacctgcttcttctgctttcactctgccttagt 50903612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 44163661 - 44163744
Alignment:
Q  138 aaagtatgaccattcttggctaaataaagactaaaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagat 223  Q
    |||||||||||||||||||| ||| || |||||||||  ||||||||||||||||||| | | ||||||||||||||||| |||||    
T  44163661 aaagtatgaccattcttggccaaacaacgactaaaaa--ctactctctctaagaaaatatgatcaaaagtattggtattcccagat 44163744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 41035080 - 41035153
Alignment:
Q  294 tcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgcctta 367  Q
    |||||||||||||||||||||| |||||| ||||||   | |||||||| |||||||||||| |||||||||||    
T  41035080 tcctcattccggctgagttaaagctagaaggcttcaaaatattcacctgcttcttcttctttttctctgcctta 41035153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 45044588 - 45044475
Alignment:
Q  5 cacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatg 104  Q
    |||||| | ||| |||||||||| ||| ||||   ||| |||||||||||  |||||||||| |||||||| | ||||||  ||||||| |||||||| |    
T  45044588 cacatggaccccgcacaaacacattttctcttttctcttctcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatgatgtctacg 45044489  T
Q  105 taacattttccttt 118  Q
    ||||||||||||||    
T  45044488 taacattttccttt 45044475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 232 - 369
Target Start/End: Original strand, 49491873 - 49492009
Alignment:
Q  232 caattgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcact 331  Q
    |||||||||||||||||| | ||    ||||||  ||||||| ||||| ||||| ||||   ||||||||||||||||||| || |||| | ||| ||||    
T  49491873 caattgaaccaactattcggtatacgccaaggcaactttggaggtacccttttgggcacgggtcctcattccggctgagttgaagctagtaggct-cact 49491971  T
Q  332 ttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||||||| || ||||||| ||||||| ||||||||||    
T  49491972 ttgttcacatgcttcttctgctttctccctgccttagt 49492009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 41758875 - 41758983
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    |||||||| | ||| |||||||||||||| ||||   |||||||||||||||  |||||| ||| |||||||| | ||||||  ||||||||| ||||||    
T  41758875 gtcacatggaccccgcacaaacacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtcta 41758974  T
Q  103 tgtaacatt 111  Q
    |||| ||||    
T  41758975 tgtatcatt 41758983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 51898713 - 51898601
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||| ||||| |||||||| | || | |||||||||||||||  ||| || ||| |||||||| | |||||||| |||||||| ||| ||    
T  51898713 gtcacgtggatcccgcacaagcacactttctatttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgttta 51898614  T
Q  103 tgtaacattttcc 115  Q
    |||||||||||||    
T  51898613 tgtaacattttcc 51898601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 49811542 - 49811447
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatttt 113  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||||||| |||| ||| | ||||||  ||||||||| |||||||||||||||||    
T  49811542 cacaagcacactttctcttttctctcctcttctctcttcctaatgtatgtggtgcacaagggtgtatgagaataaagggtgtctatgtaacatttt 49811447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37649266 - 37649376
Alignment:
Q  1 tggtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtc 100  Q
    ||||||| ||||| || ||||| ||||||||  |||   |||||||||||||||  |||||| ||| |||||||| | |||||| |||||||||| ||||    
T  37649266 tggtcacgtgaattccgcacaagcacactttcccttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtc 37649365  T
Q  101 tatgtaacatt 111  Q
    |||||| ||||    
T  37649366 tatgtatcatt 37649376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 27564750 - 27564657
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| | |||||| |||||||||| |||||||||| ||||    
T  27564750 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 27564657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 19394182 - 19394257
Alignment:
Q  294 tcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||||||||| ||| ||||||| | |||| ||||||||||| |||| || |||||||||||| ||||||| |||||    
T  19394182 tcctcattccagctaagttaaagcaagaaggcttcactttgctcacatgcttcttcttctttttctctgctttagt 19394257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 26440861 - 26440908
Alignment:
Q  70 tgtacaggtgtgtataggaataaaggatgtctatgtaacattttcctt 117  Q
    |||||| | ||||||||||||||||||||| |||||||||||||||||    
T  26440861 tgtacaagggtgtataggaataaaggatgtttatgtaacattttcctt 26440908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 38632336 - 38632253
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtct 101  Q
    ||||| |||||||||||||   |||||||||||||||  |||||| ||| |||||||| | |||||| |||||||||| |||||    
T  38632336 cacaagcacactttttcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtct 38632253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 48716273 - 48716204
Alignment:
Q  42 tcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    |||||||||||||  |||||| ||| |||||||| | |||||| |||||||||| |||||||||| ||||    
T  48716273 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 48716204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 9474891 - 9474798
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    |||||||||||||| ||||   |||||||||||||||  |||||| ||| | |||||| | ||||||  ||||||||  |||||||||| ||||    
T  9474891 cacaaacacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatgagaataaagagtgtctatgtatcatt 9474798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 3000405 - 3000497
Alignment:
Q  19 acaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    |||| |||||||| ||||   |||| ||||||||||  ||||| |||| |||||||| | |||||| | ||||| ||||||||||||| ||||    
T  3000405 acaagcacactttctcttttctctcatcttctctcttcctaatatatggggtgtacaagggtgtatggaaataatggatgtctatgtatcatt 3000497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 38595240 - 38595332
Alignment:
Q  19 acaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    |||| |||||||| ||||   |||| ||||||||||  ||||| |||| |||||||| | |||||| | ||||| ||||||||||||| ||||    
T  38595240 acaagcacactttctcttttctctcatcttctctcttcctaatatatggggtgtacaagggtgtatggaaataatggatgtctatgtatcatt 38595332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 47452350 - 47452242
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||| ||||| |||||||| ||||   |||||||||||||||  ||| || ||| |||||||| |  ||||| |||||||||  ||||||    
T  47452350 gtcacgtggatcccgcacaagcacactttctcttttctctcctcttctctcttcctattgcatggggtgtacaaggatgtatgggaataaagagtgtcta 47452251  T
Q  103 tgtaacatt 111  Q
    |||| ||||    
T  47452250 tgtatcatt 47452242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 171 - 354
Target Start/End: Complemental strand, 29346987 - 29346803
Alignment:
Q  171 aaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagattt-ctgttgcaattgaaccaactattctgcatctatcaaggcggctt 269  Q
    |||||||| | ||||||| |||||||| |||||||||||||  |||||||  | | || ||||||||| |||||||||| || |||| ||||||||||||    
T  29346987 aaaagactgccctctctatgaaaattttaacaaaagtattgacattctcatctatactcttgcaattggaccaactattatgtatctgtcaaggcggctt 29346888  T
Q  270 tggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctt 354  Q
    |||| ||||  ||||| ||||   |||||||||||||| ||||||| ||| || || |||| ||||||||||| |||||||||||    
T  29346887 tggaggtactcttttgtgcacgggtcctcattccggctaagttaaagctataaggcatcacgttgttcacctgcttcttcttctt 29346803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 25407168 - 25407065
Alignment:
Q  12 atcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |  | | |||| ||||||||| || |||| |||||||    
T  25407168 atcccacacaaacacactttctctttcatctcctcttctctctcactaatgtataaggtgtataaatatatataagaataaagggtgactatataacatt 25407069  T
Q  112 ttcc 115  Q
    ||||    
T  25407068 ttcc 25407065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 182 - 359
Target Start/End: Original strand, 35526503 - 35526681
Alignment:
Q  182 ctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgcaattgaaccaactattctgcatctatcaaggcggctttggaagtacca 280  Q
    ||||||| |||||||| ||||||||||||   |||| ||||| |||| ||||||||| ||||| |||| || ||||  |||| || |||||   |||||     
T  35526503 ctctctatgaaaatttgaacaaaagtattaacattcccagatattctattgcaattgcaccaattattttgaatctgccaagacgtctttgttggtaccc 35526602  T
Q  281 ttttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctct 359  Q
    ||||| ||||   ||||||||||||| |||||||| |||||| || |||||||||||||||| ||||||||||| ||||    
T  35526603 ttttgggcacgggtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttcttcttcttactct 35526681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 235 - 369
Target Start/End: Complemental strand, 16893201 - 16893067
Alignment:
Q  235 ttgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttg 334  Q
    ||||||||||||||| | || |  |||||| |||||||| | ||| ||||||||||   ||||||||||||||||||| || |||| | |||||||||||    
T  16893201 ttgaaccaactattcggtatatggcaaggcagctttggaggcacccttttgagcacgggtcctcattccggctgagttgaacctagtaggcttcactttg 16893102  T
Q  335 ttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||||||| ||||| | |||| | |||||||||||    
T  16893101 ttcacctgcttcttttgctttttatctgccttagt 16893067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 26141564 - 26141443
Alignment:
Q  1 tggtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctca--ctaatgtatgaggtgtacaggtgtgtataggaataaaggatg 98  Q
    |||||||||| | ||||||||| |||||||| ||||   ||||||||||| ||||   |||||||||| |||||||| | |||||| | |||||||| ||    
T  26141564 tggtcacatggaccccacacaagcacactttctcttttctctcctcttctttctcttcctaatgtatggggtgtacaagagtgtatggaaataaagggtg 26141465  T
Q  99 tctatgtaacattttcctttaa 120  Q
    ||||||||||||||||||||||    
T  26141464 tctatgtaacattttcctttaa 26141443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 238 - 367
Target Start/End: Complemental strand, 51524988 - 51524859
Alignment:
Q  238 aaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttc 337  Q
    ||||||||||| ||||||| ||||||  |||||||| |  || ||||| ||||   |||||||||||||||||||||| ||| || || ||||||| | |    
T  51524988 aaccaactattttgcatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 51524889  T
Q  338 acctgtttcttcttctttctctctgcctta 367  Q
    ||||| ||||||||||||||||| ||||||    
T  51524888 acctgcttcttcttctttctctcagcctta 51524859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 33118881 - 33118759
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctc-ttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtct 101  Q
    ||||| || ||||| || ||||||||||| |||| | ||||||| ||||||||| ||| || ||| |||||||| | |||||| | |||||||| |||||    
T  33118881 gtcacgtggatccctcagaaacacactttctctttcctctcctccttctctctccctagtgcatggggtgtacaagggtgtatggaaataaagggtgtct 33118782  T
Q  102 atgtaacattttcctttaattaa 124  Q
    | ||||||||||||| |||||||    
T  33118781 acgtaacattttcctataattaa 33118759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 47531940 - 47532050
Alignment:
Q  8 atgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaa 107  Q
    ||||| ||| ||||| |||||||| ||||   |||||| ||||||||  ||||||||||   |||||| |||||||| |||||||||| ||| |||||||    
T  47531940 atgaaccccgcacaagcacactttctcttttctctcctattctctcttcctaatgtatggaatgtacaagtgtgtatgggaataaagggtgtttatgtaa 47532039  T
Q  108 cattttccttt 118  Q
    |||||||||||    
T  47532040 cattttccttt 47532050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 41189792 - 41189679
Alignment:
Q  5 cacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatg 104  Q
    |||||| | ||| ||||| |||||||| ||||   ||||||||||| |||  ||||||||||  ||||||| | |||||| | |||||||| ||||||||    
T  41189792 cacatggaccccgcacaagcacactttctcttttctctcctcttctttcttcctaatgtatggagtgtacaagagtgtatggaaataaagggtgtctatg 41189693  T
Q  105 taacattttccttt 118  Q
    ||||||||||||||    
T  41189692 taacattttccttt 41189679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 20764929 - 20764829
Alignment:
Q  19 acaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttccttt 118  Q
    |||| |||||||| ||||   |||| ||||||||||  |||||||||| |||||||| | ||||||  ||||||| | ||||||||||||||||||||||    
T  20764929 acaagcacactttctcttttctctcatcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttccttt 20764830  T
Q  119 a 119  Q
    |    
T  20764829 a 20764829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 49607484 - 49607592
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||||||||| |||||||| ||||   ||||||||| |||||  |||||| |||| ||||||| | |||||| |||||||||| ||||||    
T  49607484 gtcacgtggatcccacacaagcacactttctcttttctctcctcttttctcttcctaatgcatgacgtgtacaagggtgtatgggaataaagggtgtcta 49607583  T
Q  103 tgtaacatt 111  Q
    |||| ||||    
T  49607584 tgtatcatt 49607592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 11347915 - 11347840
Alignment:
Q  40 tctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    |||||||||||||||  |||||||||| |||||| | | |||||| |||||||||| |||||||||| ||||||||    
T  11347915 tctcctcttctctcttcctaatgtatggggtgtataagggtgtatgggaataaagggtgtctatgtaccattttcc 11347840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 24699968 - 24699870
Alignment:
Q  19 acaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttccttt 118  Q
    ||||||||||||| |||| | |||||||||||||||  ||| | ||||||||||| | |  |||||  ||||||| ||||||||||||||||||||||||    
T  24699968 acaaacacactttctctttcctctcctcttctctcttcctagtttatgaggtgtataaga-tgtatgagaataaaagatgtctatgtaacattttccttt 24699870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 369
Target Start/End: Complemental strand, 31067241 - 31067165
Alignment:
Q  294 tcctcattccgg-ctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||||||||| | |||||||||| |||| |||| ||||||||| ||| || |||||||||||| |||||||||||||    
T  31067241 tcctcattcccgactgagttaaagctagcaagcctcactttgtgcacatgcttcttcttctttttctctgccttagt 31067165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 14623856 - 14623757
Alignment:
Q  16 cacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    ||||||| |||||||| |||| ||||| |||||||||||  ||| || |||||||||| | |  |||||  ||||||| | |||||||||||||||||||    
T  14623856 cacacaagcacactttctctttcatcttctcttctctctttctagtgcatgaggtgtagaaggatgtatgagaataaatggtgtctatgtaacattttcc 14623757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 26796875 - 26796950
Alignment:
Q  294 tcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||||||| || |||||||||| || | |  |||||||||||| || || ||||||||||||||||||||||||||    
T  26796875 tcctcatttcgactgagttaaagctggtagacttcactttgttaacatgcttcttcttctttctctctgccttagt 26796950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 51419375 - 51419276
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcctt 117  Q
    ||||| |||||||| ||||   |||||| ||||||||  |||||||||| |||||||| | |||||| | |||||| | ||| |||||||||||||||||    
T  51419375 cacaagcacactttctcttttctctcctattctctcttcctaatgtatggggtgtacaagggtgtatggaaataaaaggtgtttatgtaacattttcctt 51419276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 8076478 - 8076576
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcct 116  Q
    ||||| |||||||| |||| | |||||||||||||||  ||| || ||| ||||||||   ||||||  ||||||| | ||||||||||||||||||||    
T  8076478 cacaagcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaaaagtgtatgagaataaatggtgtctatgtaacattttcct 8076576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 13898072 - 13897970
Alignment:
Q  16 cacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    ||||||| |||||||| |||| ||||| |||||||||||| ||| |||||| |||||| |   ||||||  ||||||| | ||||||| ||||||||| |    
T  13898072 cacacaagcacactttctctttcatcttctcttctctctccctagtgtatggggtgtagaaaagtgtatgagaataaatggtgtctatctaacatttttc 13897973  T
Q  116 ttt 118  Q
    |||    
T  13897972 ttt 13897970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 43746422 - 43746524
Alignment:
Q  16 cacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    |||||||||||| ||| |||| ||||||||||||| |||  ||| || |||||||||||| | ||||||   || ||||| ||| ||||||||||||| |    
T  43746422 cacacaaacacaatttctctttcatctcctcttctttcttcctagtgcatgaggtgtacaagggtgtatgacaacaaagggtgtttatgtaacatttttc 43746521  T
Q  116 ttt 118  Q
    |||    
T  43746522 ttt 43746524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 21746207 - 21746106
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatttt 113  Q
    |||| |||| |||||||| |||| |||||| ||||||||||  | ||| ||||||||||||| | ||||||   |||||| |||||| |||||| |||||    
T  21746207 cccatacaagcacactttctctttcatctcatcttctctcttccaaatatatgaggtgtacaagggtgtatgtaaataaatgatgtccatgtaatatttt 21746108  T
Q  114 cc 115  Q
    ||    
T  21746107 cc 21746106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 33644285 - 33644378
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||| | | |||||| |||||||||| |||||||||| ||||    
T  33644285 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtataagggtgtatgggaataaagggtgtctatgtatcatt 33644378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 35536710 - 35536811
Alignment:
Q  17 acacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcct 116  Q
    |||||| |||||||  |||| ||||| |||||||||||  ||| || ||| |||||| | | ||||||  ||||||| | ||||||||||||||||||||    
T  35536710 acacaagcacacttcctctttcatcttctcttctctcttcctagtgcatggggtgtagaagggtgtatgagaataaatggtgtctatgtaacattttcct 35536809  T
Q  117 tt 118  Q
    ||    
T  35536810 tt 35536811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 53982096 - 53982189
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| |  ||||| |||||||||| |||||||||| ||||    
T  53982096 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggttgtatgggaataaagggtgtctatgtatcatt 53982189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 30801752 - 30801648
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatttt 113  Q
    ||||||||| |||| ||| |||| | |||| ||||||||||  ||| |  ||| |||||||| | ||||||  ||||||| | |||||||||||||||||    
T  30801752 cccacacaagcacattttctctttcctctcatcttctctcttcctagtacatggggtgtacaagggtgtatgagaataaaaggtgtctatgtaacatttt 30801653  T
Q  114 ccttt 118  Q
    |||||    
T  30801652 ccttt 30801648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 36707421 - 36707350
Alignment:
Q  40 tctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    |||||||||||||||  |||||| |||||||||||| |  ||||| |||||||| | |||||||||| ||||    
T  36707421 tctcctcttctctcttcctaatgcatgaggtgtacaagaatgtatgggaataaaaggtgtctatgtatcatt 36707350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 49106934 - 49106995
Alignment:
Q  135 tcaaaagtatgaccattcttggctaaataaagactaaaaagactactctctctaagaaaattt 197  Q
    ||||||||||||||||||||||   || || |||||||| |||||||||||||| ||||||||    
T  49106934 tcaaaagtatgaccattcttggtctaacaacgactaaaa-gactactctctctatgaaaattt 49106995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 1758474 - 1758373
Alignment:
Q  15 ccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttc 114  Q
    ||||||||||||| ||| |||| |||||||||||||||||  |||||| ||| ||||||||   ||||||  |||||||   ||| |||||||||||||     
T  1758474 ccacacaaacacattttctctttcatctcctcttctctcttcctaatgcatg-ggtgtacaaaggtgtat--gaataaacagtgtttatgtaacattttt 1758378  T
Q  115 cttta 119  Q
    |||||    
T  1758377 cttta 1758373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 9563084 - 9563177
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    |||||||||||||| |||    |||||||||||||||  |||||| ||||| ||||||   |||||| |||||||||| | |||||||| ||||    
T  9563084 cacaaacacactttctctcttctctcctcttctctcttcctaatgcatgagttgtacaaaggtgtatgggaataaagggtatctatgtatcatt 9563177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 35965797 - 35965700
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    ||||| |||||||| |||| | ||||||||| ||| |   ||||  |||||||||||| | ||||||  ||||||| | |||||||||||||||||||    
T  35965797 cacaagcacactttctctttcctctcctcttttcttttcttaattcatgaggtgtacaagggtgtatgagaataaaaggtgtctatgtaacattttcc 35965700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 32605941 - 32605897
Alignment:
Q  6 acatgaatcccacacaaacacactttttcttgcatctcctcttct 50  Q
    ||||| |||| |||||| ||||||||||||| |||||||||||||    
T  32605941 acatggatccaacacaagcacactttttctttcatctcctcttct 32605897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 35093671 - 35093767
Alignment:
Q  19 acaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    |||| |||||||| ||||||||||  | ||||||||  ||| || ||||| ||||||   ||||||  ||||||| |||||||| ||||||||||||    
T  35093671 acaagcacactttctcttgcatctttttttctctcttcctagtgcatgagatgtacaaaggtgtatgagaataaatgatgtctaggtaacattttcc 35093767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 235 - 367
Target Start/End: Original strand, 27786783 - 27786915
Alignment:
Q  235 ttgaaccaactattctgcatctatcaaggcggctttggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttg 334  Q
    |||||||||||||| || |||| ||||||  |||||||| | ||||||||| ||||   |||||||||||||||||||||| |||||| ||||||||||     
T  27786783 ttgaaccaactattttgtatctgtcaaggtagctttggaggaaccattttgggcacggctcctcattccggctgagttaaagctagaaggcttcacttta 27786882  T
Q  335 ttcacctgtttcttcttctttctctctgcctta 367  Q
    |||| ||| || |||||||||||||| ||||||    
T  27786883 ttcatctgcttattcttctttctctccgcctta 27786915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 171 - 369
Target Start/End: Complemental strand, 29369292 - 29369093
Alignment:
Q  171 aaaagactactctctctaagaaaatttcaacaaaagtattggtattctcagat-ttctgttgcaattgaaccaactattctgcatctatcaaggcggctt 269  Q
    |||||||||| ||||||| |||||||| |||||||| ||||  |||||| ||| ||||  |||||||| ||||||||||||| ||||  |||||||| ||    
T  29369292 aaaagactaccctctctatgaaaatttgaacaaaagcattgacattctcggatattctaatgcaattggaccaactattctgtatctgccaaggcggatt 29369193  T
Q  270 tggaagtaccattttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||| ||| | ||||| ||||   ||||||||| |||| ||||||| || ||| || ||||||| ||||| || |||||||||||| ||| || ||||||    
T  29369192 tggatgtatccttttgggcacgggtcctcattctggctcagttaaagcttgaaggcatcactttattcacgtgcttcttcttctttatctttgtcttagt 29369093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 43414613 - 43414498
Alignment:
Q  1 tggtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtc 100  Q
    |||||||||| ||||| ||||| |||||||| ||||   |||||||||||||||  |||||||||| |||||||| | |||||| | |||||||| ||||    
T  43414613 tggtcacatggatcccgcacaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatggcaataaagggtgtc 43414514  T
Q  101 tatgtaacattttcct 116  Q
    ||||||||||||||||    
T  43414513 tatgtaacattttcct 43414498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 399778 - 399850
Alignment:
Q  297 tcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    |||||||| |||| ||||| |||| || | ||||||||||||| |||||||||||||||||||||||||||||    
T  399778 tcattccgactgaattaaagctagcaaacctcactttgttcacatgtttcttcttctttctctctgccttagt 399850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 5957900 - 5958011
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||| ||||| |||||||| |||| | |||||||||||||||  ||| || |||||||||||| | ||||||  ||||||||| ||| ||    
T  5957900 gtcacgtggatcccgcacaatcacactttctctttcctctcctcttctctcttcctagtgcatgaggtgtacaagggtgtatgagaataaagggtgttta 5957999  T
Q  103 tgtaacattttc 114  Q
    ||||||||||||    
T  5958000 tgtaacattttc 5958011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 15048175 - 15048098
Alignment:
Q  39 atctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcct 116  Q
    ||||||||||||||||  |||||||||| | |||||| | |||||| |||||||||| ||||||| ||||||||||||    
T  15048175 atctcctcttctctcttcctaatgtatgggatgtacaagggtgtatcggaataaagggtgtctatataacattttcct 15048098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 281 - 369
Target Start/End: Original strand, 8831264 - 8831352
Alignment:
Q  281 ttttgagcacaaatcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    ||||||||||   |||||||||||||||||||||| |||| | || ||||||||||||  || |||||||||| | |||||||||||||    
T  8831264 ttttgagcacgggtcctcattccggctgagttaaagctagcaggcctcactttgttcatgtgcttcttcttctctttctctgccttagt 8831352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 9122255 - 9122363
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||| ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| | |||||| ||||||||| |||||||    
T  9122255 gtcacgtggatcccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaagaatgtcta 9122354  T
Q  103 tgtaacatt 111  Q
    |||| ||||    
T  9122355 tgtatcatt 9122363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 294 - 366
Target Start/End: Original strand, 36206475 - 36206547
Alignment:
Q  294 tcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgcctt 366  Q
    ||||||||||| || ||||||| |||||| |||||||||| ||||  || |||||||||||||||||||||||    
T  36206475 tcctcattccgactaagttaaagctagaaggcttcactttattcatttgcttcttcttctttctctctgcctt 36206547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 37038549 - 37038661
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||| ||||| |||||||| | || | |||||||||||||||  ||| || ||| |||||||| | |||||||| |||||||| ||| ||    
T  37038549 gtcacgtggatcccgcacaagcacactttctatttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgttta 37038648  T
Q  103 tgtaacattttcc 115  Q
    |||||||||||||    
T  37038649 tgtaacattttcc 37038661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 4854878 - 4854781
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    ||||| |||||||| ||||   ||||||||||||||| ||||||||||| | |||||| | || |||  ||||||||  |||||||||||||||||||    
T  4854878 cacaagcacactttctcttttctctcctcttctctcttactaatgtatgggatgtacaagggtatatgagaataaagagtgtctatgtaacattttcc 4854781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 25838275 - 25838370
Alignment:
Q  19 acaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttc 114  Q
    |||| |||||||||||||   ||||||||||||| |  |||||||||  |||||||| |  ||||| | |||||||||| ||||||||||||||||    
T  25838275 acaagcacactttttcttttctctcctcttctcttttgctaatgtatagggtgtacaaggttgtatggcaataaaggatatctatgtaacattttc 25838370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 42710287 - 42710216
Alignment:
Q  40 tctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    |||||||||||||||  |||||||||| |||||||| | |||||| |||||||||| ||||| |||| ||||    
T  42710287 tctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaagggtgtctgtgtatcatt 42710216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 40423958 - 40423864
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattt 112  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||  |||||||||||| | |||||| |||||||| | |||||||||| |||||    
T  40423958 cacaagcacactttctcttttctctcctcttctctcttcctaatacatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcattt 40423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 42354597 - 42354503
Alignment:
Q  24 cacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttccttt 118  Q
    |||||||| |||| ||||| |||||||||||  ||| || ||| |||||| | | ||||||  ||||||| | ||||||||||||||||||||||    
T  42354597 cacactttctctttcatcttctcttctctcttcctagtgcatggggtgtagaagggtgtatgagaataaatggtgtctatgtaacattttccttt 42354503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 8841447 - 8841350
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    ||||| |||||||| |||| | ||||||||||||| |  ||| || ||| |||||||| | ||||||  ||||||| | |||||||||||||||||||    
T  8841447 cacaagcacactttctctttcctctcctcttctcttttcctagtgcatggggtgtacaagagtgtatgagaataaatggtgtctatgtaacattttcc 8841350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 14548007 - 14548100
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| |  ||||| |||||||||| |||||||||| ||||    
T  14548007 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcatt 14548100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 34012326 - 34012218
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| || ||||| ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| | |||||   ||||||||| ||||||    
T  34012326 gtcacgtggatcccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaagggtgtcta 34012227  T
Q  103 tgtaacatt 111  Q
    |||| ||||    
T  34012226 tgtatcatt 34012218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 28225768 - 28225843
Alignment:
Q  294 tcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    ||||||||||||||||||||||  ||  || |||||||||| |||| || |||||||| | ||||||| |||||||    
T  28225768 tcctcattccggctgagttaaagttaacaaacttcactttgatcacatgcttcttcttttctctctctaccttagt 28225843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 42221596 - 42221698
Alignment:
Q  14 cccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatttt 113  Q
    |||| |||| |||||||| |||| |||||| ||||||||||  | ||| |||  |||||||| | ||||||   |||||||||||| ||| |||||||||    
T  42221596 cccatacaagcacactttctctttcatctcatcttctctcttccaaatatatagggtgtacaagggtgtatgtaaataaaggatgtttatataacatttt 42221695  T
Q  114 cct 116  Q
    |||    
T  42221696 cct 42221698  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 1179955 - 1179870
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctat 103  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| |  | ||| ||||||||||||||||||    
T  1179955 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatatatgggaataaaggatgtctat 1179870  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 10284646 - 10284549
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcc 115  Q
    ||||| |||||||| |||| | | || ||||||||||  ||| || ||| |||||||| |  |||||| ||||||| | |||||||||||||||||||    
T  10284646 cacaagcacactttctctttcctttcatcttctctcttcctagtgcatggggtgtacaaggttgtataagaataaaaggtgtctatgtaacattttcc 10284549  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 12831132 - 12831225
Alignment:
Q  18 cacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacatt 111  Q
    ||||| |||||||| ||||   |||||||||||||||  |||||| ||| |||||||| | ||||||  ||||||| | |||||||||| ||||    
T  12831132 cacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaatggtgtctatgtatcatt 12831225  T

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Target: scaffold1268 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 959 - 848
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| |||||||| ||||| |||||||| |||| | |||||||||||||||  ||| || ||| |||||||| | |||||| |||||||||| ||| ||    
T  959 gtcacgtgaatcccgcacaagcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgttta 860  T
Q  103 tgtaacattttc 114  Q
    ||||||||||||    
T  859 tgtaacattttc 848  T

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Target: scaffold1267 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 959 - 848
Alignment:
Q  3 gtcacatgaatcccacacaaacacactttttcttgcatctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtcta 102  Q
    ||||| |||||||| ||||| |||||||| |||| | |||||||||||||||  ||| || ||| |||||||| | |||||| |||||||||| ||| ||    
T  959 gtcacgtgaatcccgcacaagcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgttta 860  T
Q  103 tgtaacattttc 114  Q
    ||||||||||||    
T  859 tgtaacattttc 848  T

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Target: scaffold0531 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 294 - 369
Target Start/End: Complemental strand, 10324 - 10249
Alignment:
Q  294 tcctcattccggctgagttaaaactagaaagcttcactttgttcacctgtttcttcttctttctctctgccttagt 369  Q
    ||||||||||||||||||||||||||| | || ||||||||| ||| || |||||||||||| |||||||||||||    
T  10324 tcctcattccggctgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgccttagt 10249  T

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Target: scaffold0110 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 8851 - 8779
Alignment:
Q  45 tcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttcctt 117  Q
    ||||||||||  ||||| |||| |||||||| | ||||||| ||||||| | |||||||||||||||||||||    
T  8851 tcttctctcttcctaatatatggggtgtacaagggtgtataagaataaaaggtgtctatgtaacattttcctt 8779  T

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Target: scaffold0316 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 17210 - 17288
Alignment:
Q  40 tctcctcttctctctcactaatgtatgaggtgtacaggtgtgtataggaataaaggatgtctatgtaacattttccttt 118  Q
    |||||||||||||||  |||   ||| |||||||||   |||||| | |||||||| ||||||||||||||||||||||    
T  17210 tctcctcttctctcttcctagaatataaggtgtacaaaggtgtatggaaataaagggtgtctatgtaacattttccttt 17288  T

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