View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20287_high_24 (Length: 214)
Name: NF20287_high_24
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 21509453 - 21509647
Alignment:
| Q |
11 |
cagagaagatgcaaatataagagataccatgagcagtgaaaagcatattaagattttatatttacatatactaccactgtctacactacaggtactaaa- |
109 |
Q |
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| T |
21509453 |
cagaaaagatgcaaatataagtgataccatgagtagtgaaaagcatattaagattttatatttacatatactactactgtctacactacaggtactaaac |
21509552 |
T |
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| Q |
110 |
agcctcaa---atatcacataatgcaaccatgttgatcaacactagtttctgatgcttctggcactagataagtagtactaagtactgactatat |
201 |
Q |
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|||||||| || |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21509553 |
agcctcaaatcatgtcacataatgcaactatgatgatcaacactagtttctgacgcttctggcactagataagtagtactaagtactgactatat |
21509647 |
T |
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