View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20287_low_11 (Length: 444)
Name: NF20287_low_11
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 4933414 - 4932997
Alignment:
| Q |
13 |
aatatgactttgtcttctcaacatataccatagacacagattctacgttattcctttggttcttttcttccaatagcttcactttttcttgaagctgttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4933414 |
aatatgactttgtcttctcaacatataccatagacacagattctacgttattcttttggttcttttcttccaatagcttcactttttcttgaagctgttt |
4933315 |
T |
|
| Q |
113 |
cacatggtttatagcatcccctaatacagaagccttatccatctacatccaaatgattaatgagtaaccattaatttgtttaacaaatcaacaataaaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4933314 |
cacatggtttatagcatcccctaatacagaagccttatccatctacatccaaatgattaatgagtaaccattaatttgtttaacaaatcaacaataaaat |
4933215 |
T |
|
| Q |
213 |
taataatattgagta--tataaactatacctttttcaagtctggaagcagtgctgaaagagctataaacttttgactaattttttgtcttctctttctct |
310 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
4933214 |
taataatattgagtatatataaactatacctttttcaagtctggaaggagtgctgaaagagctataaacttttgactaattttttctcttctcttcctct |
4933115 |
T |
|
| Q |
311 |
cagcaattatgtgatcttgagcatttctagcagctgaatcagtcttcttgctctcttgaatattgcgttttggtccccttttttggttttctaaggaccc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4933114 |
cagcaattatgtgatcttgagcatttctagcagctgaatcagtcttcttgctctcttgaatattgcgttttggtccctttttttggttttctaaggaccc |
4933015 |
T |
|
| Q |
411 |
ttttgaggttaaagattt |
428 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
4933014 |
ttttgaggctaaagattt |
4932997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University