View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20287_low_13 (Length: 388)
Name: NF20287_low_13
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 5366109 - 5365741
Alignment:
| Q |
1 |
acagctgatttcaccttcgaattaaccggaaagtgggccaacaacatcctcctcgaaacagcacgagccatagcagnnnnnnncagcactcgtttacaac |
100 |
Q |
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| T |
5366109 |
acagctgatttcaccttcgaattaaccggaaggtgggccaacaacatcctcctcgaaacagcacgagccatagcagaaaaaaacagcactcgtttacaac |
5366010 |
T |
|
| Q |
101 |
aactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaactagctgcatattttctccaagccttattctctcgaatgaccga |
200 |
Q |
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| T |
5366009 |
aactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaactagctgcatattttctccaagccttattctctcgaatgaccga |
5365910 |
T |
|
| Q |
201 |
agccggtacccgaaccttccgaaccctagcttcagcatcagaaaaaacttgctctttcgaatcaacaagaaaaacggttctaaaattccaagaagttagt |
300 |
Q |
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| T |
5365909 |
agccggtacccgaaccttccgaaccctagcttcagcatcagaaaaaacttgctctttcgaatcaacaagaaaaacggttctaaaattccaagaagttagt |
5365810 |
T |
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| Q |
301 |
ccgtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaag |
369 |
Q |
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| T |
5365809 |
ccgtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaag |
5365741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 39987321 - 39987382
Alignment:
| Q |
97 |
caacaactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaact |
158 |
Q |
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| T |
39987321 |
caacaactcatgtggatgctaaacgagcttagtaccccatatggtgacacagatcaaaaact |
39987382 |
T |
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