View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20287_low_15 (Length: 325)
Name: NF20287_low_15
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 27411788 - 27412080
Alignment:
| Q |
16 |
atagtgtatatatagttgctagcatatacaaaccaattaatcaatgagctgtgatatggcccagtgagtgacatgggatcacatggaattgttttcaagg |
115 |
Q |
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| T |
27411788 |
atagtgtatatatagttgctagcatatacaaaccaattaatcaatgagctgtgatatggcccagtgagtgacatgggatcacatggaattgttttcaagg |
27411887 |
T |
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| Q |
116 |
attaggaagataaatggaagaaaatgcacataccctactttgaaaaataatgtccaacatataacccacttaaaatttgagacaatgcaatggtgaatgg |
215 |
Q |
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| T |
27411888 |
attaggaagataaatggaagaaaatgcacataccctactttgaaaaataatgtccaacatataacccacttaaaatttgagacaatgcaatggtgaatgg |
27411987 |
T |
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| Q |
216 |
aacctgatgttttttcttgtattttgggtgggtatagctaatccaatggtagacatgctttagacatctcacatcttagatttatgtgcaact |
308 |
Q |
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| T |
27411988 |
aacctgatgttttttcttgcattttgggtgggtatagctaatccaatggtagacatgctttagacatctcacatcttagatttatgtgcaact |
27412080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 107 - 289
Target Start/End: Original strand, 27419554 - 27419732
Alignment:
| Q |
107 |
ttttcaaggattaggaagataaatggaagaaaatgcacataccctactttgaaaaataatgtccaacatataaccc-acttaaaatttgagacaatgcaa |
205 |
Q |
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| T |
27419554 |
ttttcaaggattaggaagcttaatggaagagcatgcacataccccacattgtgagataatggccaacaaataaccctacttgaagtttgagacaatgcaa |
27419653 |
T |
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| Q |
206 |
tggtgaatggaacctgatgttttttcttgtattttgggtgggtatagctaatccaatggtagacatgctttagacatctcacat |
289 |
Q |
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| T |
27419654 |
tggtgaaagaaacctgatgttttttcttgcattt-----gggtatagataatccaattgtagacatgctttagacatctcacat |
27419732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 27425105 - 27425151
Alignment:
| Q |
246 |
ggtatagctaatccaatggtagacatgctttagacatctcacatctt |
292 |
Q |
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| T |
27425105 |
ggtatagctaatgcaatggtagacatggtttagacatctcacatctt |
27425151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 27566791 - 27566754
Alignment:
| Q |
248 |
tatagctaatccaatggtagacatgctttagacatctc |
285 |
Q |
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| T |
27566791 |
tatagctaatccaatggtagacatgctttagacatctc |
27566754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 27566913 - 27566861
Alignment:
| Q |
107 |
ttttcaaggattag--gaagataaatggaagaaaatgcacataccctactttg |
157 |
Q |
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| T |
27566913 |
ttttcaagcattagatgaagataaatggaagaacatgcacataccccactttg |
27566861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 27570922 - 27570881
Alignment:
| Q |
248 |
tatagctaatccaatggtagacatgctttagacatctcacat |
289 |
Q |
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| T |
27570922 |
tataactaatccaatggtagacatgctctcgacatctcacat |
27570881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 27414698 - 27414746
Alignment:
| Q |
59 |
atgagctgtgatatggcccagtgagtgacatgggatcacatggaattgt |
107 |
Q |
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| T |
27414698 |
atgagctgtgatagggcctagtgagggacaagggatcacatggtattgt |
27414746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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