View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20287_low_17 (Length: 285)
Name: NF20287_low_17
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 31952334 - 31952587
Alignment:
| Q |
14 |
agagtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaaatggtttgg |
112 |
Q |
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| T |
31952334 |
agagtggagagtccaacgatgggaatcatcttcccagcatgttgtcatccatccaatatttggaagttttcatggaaatcctgatattcaaatggtttgg |
31952433 |
T |
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| Q |
113 |
gagtccaaagtggacattagtatttcgacaacagacgataagtcaaaggggatccatttcaatcgttttaattttctgatagatcttgggaccctcgcac |
212 |
Q |
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| T |
31952434 |
gagtccaaagtggacattagtattccggcaacaaacgataagtcaaaagagatccatttcaatcgttttaattttctgatagatcttgggaccctcgcac |
31952533 |
T |
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| Q |
213 |
gagttgtttactcagctcaaggaggtgaaattgtcgttgcttttctttacggtg |
266 |
Q |
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| T |
31952534 |
gagttgtttactcagctcaaggtggtgaaattgtcgttgcttttctttacggtg |
31952587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 31950256 - 31950013
Alignment:
| Q |
17 |
gtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaaatggtttgggag |
115 |
Q |
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| T |
31950256 |
gtggagagtccaatgatgggaatcatctttccaacatgttgtcctccatccaatatttggaagttttcatggaaagcctcctatgtgaatggtttaggag |
31950157 |
T |
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| Q |
116 |
tccaaagtggacattagtatttcgacaacagacgataagtcaaaggggatccatttcaatcgttttaattttctgatagatcttgggaccctcgcacgag |
215 |
Q |
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| T |
31950156 |
tccaaagtggacattagtattccggcaacacatgataagtcaaaaaggatccatttcaatcattttgatcttccaatagatcttgggaccctcgcacgag |
31950057 |
T |
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| Q |
216 |
ttgtttactcagctcaaggaggtgaaattgtcgttgcttttctt |
259 |
Q |
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| T |
31950056 |
ttgtttactcagctcaagatggtgaaattgtcgttgcttttctt |
31950013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 3497798 - 3497558
Alignment:
| Q |
17 |
gtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaaatggtttgggag |
115 |
Q |
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| T |
3497798 |
gtggagagtccaacgatgggaatcatctttccagcctgttgtcctcaatccaatatttggaagtatggatggaaatcctcctatgcgtacggtttgggag |
3497699 |
T |
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| Q |
116 |
tccaaagtggacattagtatttcgacaacagacgataagtcaaaggggatccatttcaatcgttttaattttctgatagatcttgggaccctcgcacgag |
215 |
Q |
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| T |
3497698 |
tccaaagtggacattagtataccagcaacagacgataagtcaaaagggatccatttcaatccttttgatcttccaaaatatcttgggaccctcgcacgag |
3497599 |
T |
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| Q |
216 |
ttgtttactcagctcaaggaggtgaaattgtcgttgctttt |
256 |
Q |
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| T |
3497598 |
ttgttttctcagctcaaggtggtgaaattgccgttgctttt |
3497558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 43236817 - 43236946
Alignment:
| Q |
17 |
gtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaaatggtttgggag |
115 |
Q |
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||||||| |||||| | | ||||||| |||||||| |||||||||||||||||| ||| |||||||||| | ||| | | ||| | || |||||||| | |
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| T |
43236817 |
gtggagaatccaacaatgagaatcatttttccagcttgttgtcctccatccaatattttgaagttttcacgtaaagcctcctatgcgaacggtttggggg |
43236916 |
T |
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| Q |
116 |
tccaaagtggacattagtatttcgacaaca |
145 |
Q |
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| T |
43236917 |
tccaaagtggacattagcattccggcaaca |
43236946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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