View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20287_low_18 (Length: 250)
Name: NF20287_low_18
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_low_18 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 40962167 - 40961933
Alignment:
| Q |
16 |
ctgtgagggaattggagttgttagaatgagaaagtgttggtttgttggagtgttgtttgtggtggcatatggaagcttgttggtagaagggtacccaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40962167 |
ctgtgagggaattggagttgttagaatgagaaagtgttggtttgttggagtgttgtttgtggtggcatatggaagcttgttggtagaagggtacccaatt |
40962068 |
T |
|
| Q |
116 |
gaagatctagttgtgaagctaccaggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaacatgggaggagtctcttct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40962067 |
gaagatctagttgtgaagctaccaggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaacatgggaggagtctcttct |
40961968 |
T |
|
| Q |
216 |
attattttgttgaggctgaccatctccctcacaaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
40961967 |
attattttgttgaggctgaccatctccctcacaaa |
40961933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 40971646 - 40971799
Alignment:
| Q |
97 |
ggtagaagggtacccaattgaagatctagttgtgaagctaccaggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaa |
196 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| | ||||||||||| || ||| |||||| ||||||||||| ||| ||||||||||| ||| |
|
|
| T |
40971646 |
ggtagaagggtacccaattgaagatttcattgtgaagttgccaggccaacctaaggttgaattcaaacaatatgctggctatattgatatagatgtaagg |
40971745 |
T |
|
| Q |
197 |
catgggaggagtctcttctattattttgttgaggctgaccatctccctcacaaa |
250 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
40971746 |
catgggagaagcctcttctattattttgttgaggctgatcatgaccctcacaaa |
40971799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 30907045 - 30906912
Alignment:
| Q |
101 |
gaagggtacccaattgaagatctagttgtgaagctaccaggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaacatg |
200 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| | || ||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
30907045 |
gaagggtaccctattgaggatctggttgttagtcttccaggtcaacctaaagttgaattcagtcaatatgctggttatgttgatattgatgtaaaacatg |
30906946 |
T |
|
| Q |
201 |
ggaggagtctcttctattattttgttgaggctga |
234 |
Q |
| |
|
| || || | || |||||||||||||| ||||| |
|
|
| T |
30906945 |
gtagaagcttgttttattattttgttgaagctga |
30906912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University