View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20287_low_19 (Length: 239)

Name: NF20287_low_19
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20287_low_19
NF20287_low_19
[»] chr6 (11 HSPs)
chr6 (19-220)||(29842387-29842588)
chr6 (19-158)||(29828939-29829078)
chr6 (156-220)||(29827572-29827636)
chr6 (160-220)||(2186400-2186460)
chr6 (156-220)||(28150758-28150822)
chr6 (160-220)||(26850307-26850367)
chr6 (158-220)||(28096986-28097048)
chr6 (160-220)||(25075462-25075522)
chr6 (180-220)||(28141121-28141161)
chr6 (159-223)||(28327061-28327125)
chr6 (159-223)||(28504697-28504761)
[»] chr1 (2 HSPs)
chr1 (160-217)||(5922014-5922071)
chr1 (159-220)||(26137465-26137526)
[»] chr4 (2 HSPs)
chr4 (160-220)||(18678101-18678161)
chr4 (160-220)||(18688158-18688218)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 29842387 - 29842588
Alignment:
Q  19 actcagcacctccatactcatgtagttcctatcggccataaataatttacaagttcaatttagcaagaaaaattacactatactatgaaatatgtagtaa 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29842387 actcagcacctccatactcatgtagttcctatcggccattaataatttacaagttcaatttagcaagaaaaattacactatactatgaaatatgtagtaa 29842486  T
Q  119 tattatcacagaaaaaggaatacaaaacctgcttcagtagaaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttcttta 218  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29842487 tattatcacagaaaaaggaaatcaaaacctgcttcagtagaaccacaacctactatgctttccaggctctttcgttgattctggtcgtacaatttcttta 29842586  T
Q  219 cc 220  Q
    ||    
T  29842587 cc 29842588  T

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Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 29829078 - 29828939
Alignment:
Q  19 actcagcacctccatactcatgtagttcctatcggccataaataatttacaagttcaatttagcaagaaaaattacactatactatgaaatatgtagtaa 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  29829078 actcagcacctccatactcatgtagttcctatcggccattaataatttacaagttcaatttaggaagacaaattacactatactatgaaatatgtagtaa 29828979  T
Q  119 tattatcacagaaaaaggaatacaaaacctgcttcagtag 158  Q
    ||||| |||| ||||| |||  ||||||||| ||||||||    
T  29828978 tattaacacacaaaaaagaaatcaaaacctgattcagtag 29828939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 29827636 - 29827572
Alignment:
Q  156 tagaaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 220  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  29827636 tagaaccacaacctactacgctttccaggctctttcggtgattcttgtcgtacaatttctttacc 29827572  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 2186460 - 2186400
Alignment:
Q  160 accacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 220  Q
    |||||||||||||| | |||||||||||||| | ||||||||||||||| |||||||||||    
T  2186460 accacaacctactacgttttccaggctcttttggtgattcttgtcgtacgatttctttacc 2186400  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 28150822 - 28150758
Alignment:
Q  156 tagaaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 220  Q
    ||||||||||||||  |  |||| ||||||||||| | |||||||||||||||||||||||||||    
T  28150822 tagaaccacaacctgttgcgcttcccaggctcttttggtgattcttgtcgtacaatttctttacc 28150758  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 26850367 - 26850307
Alignment:
Q  160 accacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 220  Q
    |||||||||||||  || |||||||||||||  ||||||||||||| || |||||||||||    
T  26850367 accacaacctactgcgccttccaggctctttaattgattcttgtcggacgatttctttacc 26850307  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 28096986 - 28097048
Alignment:
Q  158 gaaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 220  Q
    |||| ||||||| ||| | |||||||| ||||| | ||||||||||| |||||||||||||||    
T  28096986 gaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacc 28097048  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 25075522 - 25075462
Alignment:
Q  160 accacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 220  Q
    |||||||||||||| | | ||||||||||||  ||||||| ||||| || |||||||||||    
T  25075522 accacaacctactacgttctccaggctctttaattgattcatgtcggacgatttctttacc 25075462  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 28141161 - 28141121
Alignment:
Q  180 ccaggctctttcgttgattcttgtcgtacaatttctttacc 220  Q
    ||||||||||| | |||||||||||| ||||||||||||||    
T  28141161 ccaggctcttttggtgattcttgtcgaacaatttctttacc 28141121  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 28327125 - 28327061
Alignment:
Q  159 aaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacctat 223  Q
    |||||||||||||||   |||||||| |||||    ||||||||||| |||||||||||||||||    
T  28327125 aaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctat 28327061  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 28504761 - 28504697
Alignment:
Q  159 aaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacctat 223  Q
    |||||||||||||||   |||||||| |||||    ||||||||||| |||||||||||||||||    
T  28504761 aaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctat 28504697  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 5922014 - 5922071
Alignment:
Q  160 accacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttcttt 217  Q
    |||| ||||||||  |||||||||||||||||| |||||||||||  |||||||||||    
T  5922014 accataacctactgcgctttccaggctctttcggtgattcttgtctaacaatttcttt 5922071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 26137526 - 26137465
Alignment:
Q  159 aaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 220  Q
    ||||||||||||||  | |||||||| ||||| | |||||||||||| ||||||||||||||    
T  26137526 aaccacaacctactgcgttttccaggttctttgggtgattcttgtcggacaatttctttacc 26137465  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 18678101 - 18678161
Alignment:
Q  160 accacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 220  Q
    |||||||||||||| ||||| |||||||||| | ||||||||  || || |||||||||||    
T  18678101 accacaacctactacgcttttcaggctctttgggtgattctttccggacgatttctttacc 18678161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 18688158 - 18688218
Alignment:
Q  160 accacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 220  Q
    ||||||||| |||| ||||| |||||||||| | ||||||||  || ||||||||||||||    
T  18688158 accacaaccgactacgcttttcaggctctttaggtgattctttccggacaatttctttacc 18688218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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