View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20287_low_25 (Length: 214)

Name: NF20287_low_25
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20287_low_25
NF20287_low_25
[»] chr1 (4 HSPs)
chr1 (18-115)||(31186903-31187000)
chr1 (115-196)||(31187107-31187188)
chr1 (18-104)||(31009130-31009216)
chr1 (151-196)||(31009317-31009362)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 31186903 - 31187000
Alignment:
Q  18 atgtcaatacttcatttgatttgctgctactaaatgattggaacctaacaatgttcgttaagctttgtactaaatttgaggagcattttgacgagctt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31186903 atgtcaatacttcatttgatttgctgctactaaatgattggaacctaacaatgttcgttaagctttgtactaaatttgaggagcattttgacgagctt 31187000  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 31187107 - 31187188
Alignment:
Q  115 tctcatatgataagcacttaggaataagtgcttaacaagtgcttaactaaggtttatacataagctcttacccaaccgcccc 196  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31187107 tctcatatgataagcaattaggaataagtgcttaacaagtgcttaactaaggtttatacataagctcttacccaaccacccc 31187188  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 31009130 - 31009216
Alignment:
Q  18 atgtcaatacttcatttgatttgctgctactaaatgattggaacctaacaatgttcgttaagctttgtactaaatttgaggagcatt 104  Q
    ||||||||| || |||||||||| |  ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  31009130 atgtcaatatttgatttgatttggtcttactaaatgatcggaacctaacaattttcattaagctttgtactaaatttgaggagcatt 31009216  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 31009317 - 31009362
Alignment:
Q  151 aagtgcttaactaaggtttatacataagctcttacccaaccgcccc 196  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||    
T  31009317 aagtacttaactaaggtttatacacaagctcttacccaaccgcccc 31009362  T

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