View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20287_low_3 (Length: 601)

Name: NF20287_low_3
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20287_low_3
NF20287_low_3
[»] chr5 (2 HSPs)
chr5 (12-594)||(23009550-23010129)
chr5 (12-460)||(24666817-24667264)
[»] chr3 (2 HSPs)
chr3 (47-425)||(13015804-13016182)
chr3 (514-567)||(13015641-13015694)
[»] chr8 (1 HSPs)
chr8 (44-448)||(22711858-22712259)
[»] scaffold0039 (1 HSPs)
scaffold0039 (44-460)||(48423-48836)
[»] chr7 (1 HSPs)
chr7 (122-421)||(13271960-13272257)
[»] chr6 (2 HSPs)
chr6 (114-323)||(20081355-20081565)
chr6 (44-151)||(16163082-16163188)
[»] chr1 (3 HSPs)
chr1 (356-425)||(20862022-20862091)
chr1 (345-425)||(22617760-22617840)
chr1 (39-76)||(22802036-22802073)
[»] chr4 (1 HSPs)
chr4 (361-419)||(14929431-14929489)
[»] scaffold0142 (1 HSPs)
scaffold0142 (354-425)||(14695-14766)
[»] scaffold0013 (1 HSPs)
scaffold0013 (39-76)||(112367-112404)


Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 12 - 594
Target Start/End: Complemental strand, 23010129 - 23009550
Alignment:
Q  12 acaaatttctaatataaaatcattagcttttcctccaataatgaggctgaatatgaagccttaatagtgggattatagatgctgctaggactgagggcaa 111  Q
    ||||||||| | |||||||||||| ||| ||||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  23010129 acaaatttcaagtataaaatcattggctgttccttcaataatgaggctgaatatgaagccttaat---gggattatagatgctgctaggactgagggcaa 23010033  T
Q  112 ataatgttgtgataaatggagattcagaattggtggtgaaacaactaacaaagaaatacaaatgcataagtgagaatttgatttcttattttgtttctgc 211  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||    
T  23010032 agaatgttgtgataaagggagattcagaattggtggtgaaacaactaacaaaggaatacaagtgcataagtgagaatttgattttttattttgtttctgc 23009933  T
Q  212 taatgctctgttaaataattttgaatctgtcaatattcaacatgtgccaagaattgagaatcaagtggcaaatgatttggcacgagttgctttatgatat 311  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  23009932 taatgctttgttaaataattttgaatctgtcaatattcaacatgtgccacaaattgagaatcaagtggcaaatgatttggcacaagtagcttcatgatat 23009833  T
Q  312 aaagtttctaagtagaaactacatgaattgattgagattaaggataaactggttcctattgaatgcccttcgacaaaattgtcaatgccaaaacttgtgg 411  Q
    ||||||| ||| |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23009832 aaagtttataaatagaaacttcaggaattgattgagattaaggataaattggttcctattgaatgcccttcgacaaaattgtcaatgccaaaacttgtgg 23009733  T
Q  412 gggaagaaggagaagaattagattctaatgagccatattcttatcctgaaatttttgaaattttcgccattaacaatttgtcaaagcgatttgatttcga 511  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23009732 gggcagaaggagaagaattagattctaatgagccatattcttatcctgaaatttttgaaattttcgccattaacaatttgtcaaagcgatttgatttcga 23009633  T
Q  512 caatagagtatttaaattaaaaggcaaatatttggaaaagtataagcctgttgtgcggaaggttataatggcacgagaataat 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23009632 caatagagtatttaaattaaaaggcaaatatttggaaaagtataagcctgttgtgcggaaggttataatggcacgagaataat 23009550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 12 - 460
Target Start/End: Complemental strand, 24667264 - 24666817
Alignment:
Q  12 acaaatttctaatataaaatcattagcttttcctccaataatgaggctgaatatgaagccttaatagtgggattatagatgctgctaggactgagggcaa 111  Q
    ||||| || ||||||||||||| | | | || ||||||||||||||||||||| ||||| |||||||| |||||| |||| || ||    ||  ||||||    
T  24667264 acaaaattttaatataaaatcaatggatcttgctccaataatgaggctgaatacgaagcattaatagttggattagagatactacttt--ctaggggcaa 24667167  T
Q  112 ataatgttgtgataaatggagattcagaattggtggtgaaacaactaacaaagaaatacaaatgcataagtgagaatttgatttcttattttgtttctgc 211  Q
    | |||||||||||||| ||| ||| | |||||||||||||||||||||||||| | || |||| |||||||||||||||| |||||||||||||||||||    
T  24667166 agaatgttgtgataaaaggaaattgaaaattggtggtgaaacaactaacaaaggagtataaatccataagtgagaatttgttttcttattttgtttctgc 24667067  T
Q  212 taatgctctgttaaataattttgaatctgtcaatattcaacatgtgccaagaattgagaatcaagtggcaaatgatttggcacgagttgctttatgatat 311  Q
    |||| || |||||||||||||| ||| ||| ||||||||||||||||  ||||||||||||||||||| ||||||||| | || |||| ||| | | |||    
T  24667066 taattctttgttaaataattttcaatatgtaaatattcaacatgtgcatagaattgagaatcaagtggtaaatgatttaggacaagtttcttcaggttat 24666967  T
Q  312 aaagtttctaagtagaaactacatgaattgattgagattaaggataaactggttcctattgaatg----cccttcgacaaaattgtcaatgccaaaactt 407  Q
    || ||||||||  | ||| |||| ||||||||||| || ||||||||| | |||| ||||||||     ||||||||||||||||||||| |||||||||    
T  24666966 aaggtttctaaacataaattacaggaattgattgaaatcaaggataaattagttcatattgaattaattcccttcgacaaaattgtcaattccaaaactt 24666867  T
Q  408 gtgggggaagaaggagaagaattagattctaatgagccatattcttatcctga 460  Q
    || |||| ||||||   ||||| ||| ||||  ||| ||||||||||||||||    
T  24666866 gtaggggcagaagg---agaataagactctagcgagtcatattcttatcctga 24666817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 47 - 425
Target Start/End: Complemental strand, 13016182 - 13015804
Alignment:
Q  47 caataatgaggctgaatatgaagccttaatagtgggattatagatgctgctaggactgagggcaaataatgttgtgataaatggagattcagaattggtg 146  Q
    ||||||||||||||||||  |||| ||||||||| ||||| |||| || ||  | ||| ||||||| |||||||||||||| |||||||| |||||||||    
T  13016182 caataatgaggctgaatacaaagctttaatagtgagattagagatactccttcggctgcgggcaaagaatgttgtgataaagggagattcggaattggtg 13016083  T
Q  147 gtgaaacaactaacaaagaaatacaaatgcataagtgagaatttgatttcttattttgtttctgctaatgctctgttaaataattttgaatctgtcaata 246  Q
    ||||| |||||||||||| | |||||||| |||| |||||||||| ||||||||||||||||||||  | || |||||||||||||||||||| || |||    
T  13016082 gtgaagcaactaacaaaggagtacaaatgaataaatgagaatttgttttcttattttgtttctgctgtttctttgttaaataattttgaatctatcgata 13015983  T
Q  247 ttcaacatgtgccaagaattgagaatcaagtggcaaatgatttggcacgagttgctttatgatataaagtttctaagtagaaactacatgaattgattga 346  Q
    || | ||||||| |||||| ||||||||||||||||||||||| |||| ||||| || | ||||||| |||||||| |||||| || | |||||||| ||    
T  13015982 tttagcatgtgcaaagaatcgagaatcaagtggcaaatgatttagcacaagttgtttcaggatataaggtttctaaatagaaattaaaggaattgataga 13015883  T
Q  347 gattaaggataaactggttcctattgaatgcccttcgacaaaattgtcaatgccaaaacttgtgggggaagaaggagaa 425  Q
     || ||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  13015882 aatcaaggataaattggttcctactgaatgtccttctacaaaattgtcaatgccaaaacttgtgggggcagaaggagaa 13015804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 567
Target Start/End: Complemental strand, 13015694 - 13015641
Alignment:
Q  514 atagagtatttaaattaaaaggcaaatatttggaaaagtataagcctgttgtgc 567  Q
    ||||||| | |||| |||| ||||||||||||||||| ||||||| ||||||||    
T  13015694 atagagtgtgtaaaataaatggcaaatatttggaaaaatataagcttgttgtgc 13015641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 44 - 448
Target Start/End: Original strand, 22711858 - 22712259
Alignment:
Q  44 ctccaataatgaggctgaatatgaagccttaatagtgggattatagatgctgctaggactgagggcaaataatgttgtgataaatggagattcagaattg 143  Q
    ||||||||||||||| || || |||||||||||| |||||||| | || ||||| |||||  ||||||| |||||||||||||| | ||  |||||||||    
T  22711858 ctccaataatgaggccgagtacgaagccttaataatgggattagatatactgcttggactcggggcaaagaatgttgtgataaaggaagcatcagaattg 22711957  T
Q  144 gtggtgaaacaactaacaaagaaatacaaatgcataagtgagaatttgatttcttattttgtttctgctaatgctctgttaaataattttgaatctgtca 243  Q
    |||||||| || |||| |||| |||||||||||||||||||||||||  |||||||||| |||||||||||| || ||||| |||||||||||||| ||     
T  22711958 gtggtgaagcagctaaaaaaggaatacaaatgcataagtgagaatttattttcttatttcgtttctgctaattctttgttatataattttgaatctatcg 22712057  T
Q  244 atattcaacatgtgccaagaattgagaatcaagtggcaaatgatttggcacgagttgctttatgatataaagtttctaagtagaaactacatgaattgat 343  Q
    ||||||||||| | ||||||||| |||||||| ||||||||||||| |||  |||||||| | |||||||| ||||||| | |||| |||| ||||||||    
T  22712058 atattcaacattttccaagaatttagaatcaactggcaaatgatttagcataagttgcttcaggatataaaatttctaaatggaaattacaggaattgat 22712157  T
Q  344 tgagattaaggataaactggttcctattgaatgcccttcgacaaaattgtcaatgccaaaacttgtgggggaagaaggagaagaattagattctaatgag 443  Q
     || |||||||||||| |||||||||||||||||| ||||| |||| ||||||||||||||||| | ||||||||| |   ||||| |||||||| ||||    
T  22712158 agaaattaaggataaattggttcctattgaatgcctttcgataaaaatgtcaatgccaaaactttttggggaagaaag---agaatcagattctagtgag 22712254  T
Q  444 ccata 448  Q
    |||||    
T  22712255 ccata 22712259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 175; Significance: 6e-94; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 44 - 460
Target Start/End: Original strand, 48423 - 48836
Alignment:
Q  44 ctccaataatgaggctgaatatgaagccttaatagtgggattatagatgctgctaggactgagggcaaataatgttgtgataaatggagattcagaattg 143  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||| ||||| |||||  ||||||  |||||| ||||||| || |||| |||||||    
T  48423 ctccaataatgaagctgaatacgaagccttaatagtgggattagagatactgcttggacttggggcaaggaatgttttgataaagggcgatttagaattg 48522  T
Q  144 gtggtgaaacaactaacaaagaaatacaaatgcataagtgagaatttgatttcttattttgtttctgctaatgctctgttaaataattttgaatctgtca 243  Q
    | ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| |||| ||| | || | | |||||||||||| |||||||    
T  48523 ggggtgaaacaactaacaaaggagtacaaatgcataagtgagaatttgttttcttattttgattctactagttctttttaaaataattttgagtctgtca 48622  T
Q  244 atattcaacatgtgccaagaattgagaatcaagtggcaaatgatttggcacgagttgctttatgatataaagtttctaagtagaaactacatgaattgat 343  Q
    |||||||||||||| ||||||||||||||||||||||||||||| | |||| |  ||||| | ||||||| ||||||||  ||||| |||||||||| ||    
T  48623 atattcaacatgtgtcaagaattgagaatcaagtggcaaatgatctagcacaacctgcttcaggatataaggtttctaaacagaaattacatgaattaat 48722  T
Q  344 tgagattaaggataaactggttcctattgaatgcccttcgacaaaattgtcaatgccaaaacttgtgggggaagaaggagaagaattagattctaatgag 443  Q
      | || ||||||||| | || ||||||||||| | | ||| | ||||||||||| |||||||| |||||| ||||||   |||||| || |||||||||    
T  48723 ataaatcaaggataaattagtccctattgaatgtcatacgatagaattgtcaatgtcaaaacttttgggggcagaagg---agaatttgactctaatgag 48819  T
Q  444 ccatattcttatcctga 460  Q
    |||| ||||||| ||||    
T  48820 ccatgttcttatgctga 48836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 122 - 421
Target Start/End: Complemental strand, 13272257 - 13271960
Alignment:
Q  122 gataaatggagattcagaattggtggtgaaacaactaacaaagaaatacaaatgcataagtgagaatttgatttcttattttgtttctgctaatgctctg 221  Q
    |||||||||||||||| ||||||| || ||    ||||||||| |||||||||||||||||||||||||  |||||||||  || ||||||||| || ||    
T  13272257 gataaatggagattcaaaattggtcgtaaagtggctaacaaaggaatacaaatgcataagtgagaatttattttcttatt--gtatctgctaattctttg 13272160  T
Q  222 ttaaataattttgaatctgtcaatattcaacatgtgccaagaattgagaatcaagtggcaaatgatttggcacgagttgctttatgatataaagtttcta 321  Q
    |||||||||||||||| | || |||| ||| ||||||||||||||| ||||||||| ||||||||||| |||| ||| |||| | |||||||| ||||||    
T  13272159 ttaaataattttgaatttttcgatatgcaatatgtgccaagaattgtgaatcaagttgcaaatgatttagcacaagtagcttcaggatataaaatttcta 13272060  T
Q  322 agtagaaactacatgaattgattgagattaaggataaactggttcctattgaatgcccttcgacaaaattgtcaatgccaaaacttgtgggggaagaagg 421  Q
    |  | ||| ||||||| ||||| || || || |||||| ||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  13272059 aacataaattacatgagttgatagaaatcaatgataaattggttcccactgaatgcccttcgacaaaattgtcaatgccaaaacctgtgggagaagaagg 13271960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 114 - 323
Target Start/End: Original strand, 20081355 - 20081565
Alignment:
Q  114 aatgttgtgataaatggagattcagaattggtggtgaaacaactaacaaagaaatacaaatgcataagtgagaatttgatttcttattttgtttctgcta 213  Q
    |||||||  ||||| || |||||||  ||| ||||||||||| ||| |||  ||||||||||||||||||| ||||||| | | | || ||||| ||| |    
T  20081355 aatgttgaaataaaaggggattcagtgttgatggtgaaacaattaataaaagaatacaaatgcataagtgaaaatttgaatacgtgttctgtttatgcca 20081454  T
Q  214 atgctctgttaaataattttgaatctgtcaatattcaacatgtgcc--aagaattgagaatcaagtggcaaatgatttggcacgagttgctttatgatat 311  Q
    || || |||| || ||| |||||||||| |||||||||||||||||  || |||| | ||||||||||||||||||||||||| ||||  || | |||||    
T  20081455 attctttgttgaa-aatgttgaatctgttaatattcaacatgtgcctcaaaaattaaaaatcaagtggcaaatgatttggcacaagttatttcaggatat 20081553  T
Q  312 aaagtttctaag 323  Q
    ||||||||||||    
T  20081554 aaagtttctaag 20081565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 16163188 - 16163082
Alignment:
Q  44 ctccaataatgaggctgaatatgaagccttaatagtgggattatagatgctgctaggactgagggcaaataatgttgtgataaatggagattcagaattg 143  Q
    |||||||||||||| ||||||  ||||||||||||| |||||| |||| |||||  ||||| ||| |||||||| ||||||||| | ||||||| |||||    
T  16163188 ctccaataatgaggttgaatacaaagccttaatagtcggattagagatactgcttcgactg-gggaaaataatgatgtgataaaggaagattcataattg 16163090  T
Q  144 gtggtgaa 151  Q
     |||||||    
T  16163089 atggtgaa 16163082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 20862091 - 20862022
Alignment:
Q  356 taaactggttcctattgaatgcccttcgacaaaattgtcaatgccaaaacttgtgggggaagaaggagaa 425  Q
    |||| ||| ||||| ||||||||||||| ||||||||| |||||||||||||||||||| |||| |||||    
T  20862091 taaattgggtcctactgaatgcccttcggcaaaattgttaatgccaaaacttgtgggggcagaaagagaa 20862022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 22617760 - 22617840
Alignment:
Q  345 gagattaaggataaactggttcctattgaatgcccttcgacaaaattgtcaatgccaaaacttgtgggggaagaaggagaa 425  Q
    ||||| || |||||| ||||||||| |  ||||||||||||||||| || ||| |||||||||||||||| | ||||||||    
T  22617760 gagatcaaagataaattggttcctactagatgcccttcgacaaaatggttaataccaaaacttgtgggggcaaaaggagaa 22617840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 22802073 - 22802036
Alignment:
Q  39 ttttcctccaataatgaggctgaatatgaagccttaat 76  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  22802073 ttttgctctaataatgaggctgaatatgaagccttaat 22802036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 14929489 - 14929431
Alignment:
Q  361 tggttcctattgaatgcccttcgacaaaattgtcaatgccaaaacttgtgggggaagaa 419  Q
    |||||||||||| ||||||||||||| ||| || ||||| |||||||||||||| ||||    
T  14929489 tggttcctattggatgcccttcgacataatagttaatgcaaaaacttgtgggggcagaa 14929431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 425
Target Start/End: Complemental strand, 14766 - 14695
Alignment:
Q  354 gataaactggttcctattgaatgcccttcgacaaaattgtcaatgccaaaacttgtgggggaagaaggagaa 425  Q
    |||||| || |||||| |||||||||||||||| | | || |||||||||||||||| || || ||||||||    
T  14766 gataaattgattcctactgaatgcccttcgacatagtggttaatgccaaaacttgtgtggaaacaaggagaa 14695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 112367 - 112404
Alignment:
Q  39 ttttcctccaataatgaggctgaatatgaagccttaat 76  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  112367 ttttgctctaataatgaggctgaatatgaagccttaat 112404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University