View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20287_low_4 (Length: 592)
Name: NF20287_low_4
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 14 - 576
Target Start/End: Original strand, 39934694 - 39935256
Alignment:
| Q |
14 |
gacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctca |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934694 |
gacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctcc |
39934793 |
T |
|
| Q |
114 |
tattcgctggagcggcataagtgattttccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaag |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39934794 |
tattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaag |
39934893 |
T |
|
| Q |
214 |
acaataacagcaacagaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaaccaagctactttggattgcta |
313 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39934894 |
acaataacagaaacaaaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaaccaagctactttggattgcta |
39934993 |
T |
|
| Q |
314 |
ttggagttgataggaatatacttgaagaccaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934994 |
ttggagttgataggaatatacttgaagaccaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcat |
39935093 |
T |
|
| Q |
414 |
gtgatggatgaatcattgatacatggatgaggctttaaagaattgattattgctgtcaaaaacaaaataattgtgccctgcatgtgcaaaggtaaaaaat |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39935094 |
gtgatggatgaatcattgatacatggatgaggctttaaagaattgattattgctgtcaaaaacaaaataattgtgccctgcatgtgcaaaggtaaaaaat |
39935193 |
T |
|
| Q |
514 |
taaaagagaattgttactagacgaataagtgtgtgtatagttccacttttcgatgcgacaatt |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39935194 |
taaaagagaattgttactagacgaataagtgtgtgtatagttccacttttcgatgcgacaatt |
39935256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 39695419 - 39695091
Alignment:
| Q |
14 |
gacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctca |
113 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39695419 |
gacatggaaacattat--gcacatgtactaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctcc |
39695322 |
T |
|
| Q |
114 |
tattcgctggagcggcataagtgattttcc-ggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaa |
212 |
Q |
| |
|
|||||| |||||||||||| | ||||||| ||||| ||||||||||| ||| || ||||| ||||||||||| ||||| ||||||||||||||||| || |
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|
| T |
39695321 |
tattcgttggagcggcataggc-attttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatatcaa |
39695223 |
T |
|
| Q |
213 |
gacaataacagcaacagaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaaccaagctactttggattgct |
312 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
39695222 |
gactataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaaccaagcaactttggattgct |
39695123 |
T |
|
| Q |
313 |
attggagttgataggaatatacttgaagacca |
344 |
Q |
| |
|
|||||||||| || |||||||||||||||||| |
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|
| T |
39695122 |
attggagttgctaagaatatacttgaagacca |
39695091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 39704317 - 39704008
Alignment:
| Q |
30 |
atgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctcatattcgctggagcggc |
129 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || || ||| |
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|
| T |
39704317 |
atgcacatgtaccaatttgagcctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattcgttgaagtggc |
39704218 |
T |
|
| Q |
130 |
ataagtgattttccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaagacaataacagcaacag |
229 |
Q |
| |
|
||| | | |||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||| || |||||||| ||| ||||||| ||||| |
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|
| T |
39704217 |
ataggcgtttttccagtaatcttatgccaacatggcaatagcactctgtcaagaaaggtgaggaaaatggatgttgatattatgactataacagaaacag |
39704118 |
T |
|
| Q |
230 |
aactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaaccaagctactttggattgctattggagttgataggaa |
329 |
Q |
| |
|
||| |||||| ||||| |||||||||||||| || ||||||||| |||||||||||||||| || ||||||||||||||||||||||||| || ||| |
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|
| T |
39704117 |
aaccagctggaattttgaaatggggtcctaatgagcgatccatggctaaagcttgaagtaccgtcacactactttggattgctattggagttgctaagaa |
39704018 |
T |
|
| Q |
330 |
tatacttgaa |
339 |
Q |
| |
|
|||||||||| |
|
|
| T |
39704017 |
tatacttgaa |
39704008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 39929063 - 39929368
Alignment:
| Q |
35 |
catgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctcatattcgctggagcggcataag |
134 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||| ||| |||| | |||||| || || | |
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|
| T |
39929063 |
catgcgctaatttgagtctcttcgattcaacaagagcagagaccaccatgccaagaacattgaacacatgtcctactcctatttgatggagcagcttagg |
39929162 |
T |
|
| Q |
135 |
tgattttccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaagacaataacagcaacagaacta |
234 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || ||||| | |
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|
| T |
39929163 |
agattttctggtaaccttatgccaacttggcaatagcaccctgtcaagaaaagtgaggaaaatgggtgctgatattaagactataacagaaatagaacca |
39929262 |
T |
|
| Q |
235 |
gctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaaccaagctactttggattgctattggagttgataggaatatac |
334 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| || ||| |||| ||| |||||||| |||||||||||| || |
|
|
| T |
39929263 |
gctgggatttcaaaatggtatcctaaagaacgatccatgactaaagcttgaagtataatgaagtccatttgcattactattggaattgataggaatagac |
39929362 |
T |
|
| Q |
335 |
ttgaag |
340 |
Q |
| |
|
|||||| |
|
|
| T |
39929363 |
ttgaag |
39929368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 341 - 522
Target Start/End: Original strand, 39930479 - 39930660
Alignment:
| Q |
341 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatggatgaatcattgatacatgga |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| | |||||| |
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|
| T |
39930479 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtagtagatgaatctttgctgcatgga |
39930578 |
T |
|
| Q |
441 |
tgaggctttaaagaattgattattgctgtcaaaaacaaaataattgtgccctgcatgtgcaaaggtaaaaaattaaaagaga |
522 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||| || | |||||||||||||| |||||||| | ||| |||||||||| |
|
|
| T |
39930579 |
tgaggctttaatgaattgattgtttctgtcaaaaataatagaattgtgccctgcaagtgcaaagttgaaagtttaaaagaga |
39930660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 341 - 522
Target Start/End: Complemental strand, 39692847 - 39692666
Alignment:
| Q |
341 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatggatgaatcattgatacatgga |
440 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
39692847 |
accaaaaccaattgatattaacactatgcttatgtataaaactgtatattggattcctgttggtggtttgcatgtgattgatgaatcattgctacatgga |
39692748 |
T |
|
| Q |
441 |
tgaggctttaaagaattgattattgctgtcaaaaacaaaataattgtgccctgcatgtgcaaaggtaaaaaattaaaagaga |
522 |
Q |
| |
|
|||||||||| ||||| || |||| ||||| || || | |||||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
39692747 |
tgaggctttagtgaattaatagttgccgtcaagaataatagaattgtgccctgcaagtgcaaaggtgaaagtttaaaagaga |
39692666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 341 - 495
Target Start/End: Complemental strand, 39702820 - 39702666
Alignment:
| Q |
341 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatggatgaatcattgatacatgga |
440 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||| |
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|
| T |
39702820 |
accaaaaccaattgatattaggactatgcttatgtataaaactgtatattggattcctgttggtggtatgcatgtgatggatgaatcattgctgcatgga |
39702721 |
T |
|
| Q |
441 |
tgaggctttaaagaattgattattgctgtcaaaaacaaaataattgtgccctgca |
495 |
Q |
| |
|
||||||||||| ||||||||| ||||||| || |||| |||||||||||||| |
|
|
| T |
39702720 |
tgaggctttaatgaattgattgttgctgttaaggttaaaagaattgtgccctgca |
39702666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 34 - 292
Target Start/End: Original strand, 38061739 - 38062001
Alignment:
| Q |
34 |
acatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctcatattcgctggagcggcataa |
133 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| ||||||||||| || |||| |||||||||| ||| ||| |||||| |||||||||||| |
|
|
| T |
38061739 |
acatgtgctaatttgagtctttttgtctcaacaagagcggagacaaccatacccagaatggtcaacacatagcctactcctattcgttggagcggcatag |
38061838 |
T |
|
| Q |
134 |
g-tgattttccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaagac---aataacagcaacag |
229 |
Q |
| |
|
| | |||| |||| ||| ||| ||||| |||||| | ||| ||||||||||| ||||| ||||| | || ||||||||| || |||||||| ||||| |
|
|
| T |
38061839 |
gcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgaggaaaatagatgttgatattaacactataataacagaaacag |
38061938 |
T |
|
| Q |
230 |
aactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaa |
292 |
Q |
| |
|
||| |||||||||||||||||| | ||||| ||| |||||||||| |||| |||||||||||| |
|
|
| T |
38061939 |
aaccagctgggattttaaaatgagatcctacagaacgatccatgattaaatcttgaagtacaa |
38062001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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