View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20287_low_5 (Length: 568)
Name: NF20287_low_5
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 8005194 - 8005682
Alignment:
| Q |
1 |
ccataaagttcttgcagagctgtttcttgatcagtggtaaacccctagacaatatatatttcagaacacaaatcaatgttttctctcattcaaacattat |
100 |
Q |
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| T |
8005194 |
ccataaagttcttgcagagctgtttcttgatcagtgataaacccctagacaatatatatttcagaacacaaatcaatgttttctctcattcaaacattat |
8005293 |
T |
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| Q |
101 |
gtaaaaaggtcaaggtgattctttccttaaaatgaatacaaaaacaagtgtaactatgtttgaagcagagtagcttcttaatacaatgacatttataaaa |
200 |
Q |
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| T |
8005294 |
gtaaaaaggtcaaggtgattctttccttaaaattaatacaaaaacaagtgtaactatgtttgaagcagagtagcttcttaa--------catttataaaa |
8005385 |
T |
|
| Q |
201 |
gatggatagttaattttcgatatcacatcgcatgatatccaagggttttaggagaaacatgtgctcagagttttagttttggtaaaagaatgtgcaacaa |
300 |
Q |
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| T |
8005386 |
gatggatagttaattttcgatatcacatcgcatgatatccaagggttttaggagaaacatgtgctcagagttttagttttggtaaaagaatgtgcaaaaa |
8005485 |
T |
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| Q |
301 |
ttcttttaccaccagctagaaacaaatttgcatgattggctaaggtcattaaggaatagatactttctcacttattcagcctatctaattattgttcaaa |
400 |
Q |
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| T |
8005486 |
ttcttttaccaccagctagaaacaaatttgcatgattggctaaggtcattaaggaatagatactttctcacttattcagcctatctaattattgttcaaa |
8005585 |
T |
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| Q |
401 |
acaaacctttgattctttatattaatcagttatgtgccaaactaagtaaagataatcattacatgataaaagctaacaaatatatttttcatacagg |
497 |
Q |
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| T |
8005586 |
acaaacctttgattctttatattaatcagttatgtgccaaactaagtaaagataatcattacatgataaaagctaacaaatatatttttcatacagg |
8005682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 49772152 - 49771885
Alignment:
| Q |
4 |
taaagttcttgcagagctgtttcttgatcagtggtaaacccctagacaatatatatttcagaacacaaatcaatgttttctctcattcaaacattatgta |
103 |
Q |
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| T |
49772152 |
taaagttcttgcagagctgtttcttgatcagtgataaacccctagacaatatatatttcagaacacaaatcaatgttttttctcattcaaacattatgta |
49772053 |
T |
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| Q |
104 |
aaaaggtcaaggtgattctttcctt-aaaatgaatacaaaaacaagtgtaactatgtttgaagcagagtagcttcttaatacaatgacatttataaaaga |
202 |
Q |
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| T |
49772052 |
aaaaggtcaaggtgattctttgcttaaaaattagtacaaaaataagtgtaaccatacttgaagcagagtagcttcttaatacaatggcattcacaaaaga |
49771953 |
T |
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| Q |
203 |
tggatagttaattttcgatatcacatcgcatgatatccaagggttttaggagaaacatgtgctcagag |
270 |
Q |
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| T |
49771952 |
tggatagttaattttggatatcactttgcatgatatccaagggttttaggagaaacatgtgctaagag |
49771885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 515 - 553
Target Start/End: Original strand, 8005701 - 8005739
Alignment:
| Q |
515 |
gcagttatagctgtttattgcatgctcaaacagtataat |
553 |
Q |
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| T |
8005701 |
gcagttatagctgtttattgcatgctcaaacagtataat |
8005739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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