View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20287_low_6 (Length: 548)
Name: NF20287_low_6
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 11 - 526
Target Start/End: Complemental strand, 2782064 - 2781549
Alignment:
| Q |
11 |
ttatactggtgcttataaatcattgcgccgtggttctgctaatatggatgtgctgatagcactgggaacaaatgcagcttatttctactctgtttattct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2782064 |
ttatactggtgcttataaatcattgcgccgtggttctgctaatatggatgtgctgatagcactgggaacaaatgcagcttatttctattctgtttattct |
2781965 |
T |
|
| Q |
111 |
gttttgagagctgctacttctaaggtttttgaaggtactgatttctttgagactagtgcgatgcttatttcgtttattctattaggaaagtatcttgagg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2781964 |
gttttgagagctgctacttctaaggtttttgaaggtactgatttctttgagactagtgcgatgcttatttcgtttattctattaggaaagtatcttgagg |
2781865 |
T |
|
| Q |
211 |
ttttagctaaggggaaaacatcaaatgcaattgcaaagttaatgaatttgacacctgatactgctatattgttgagtttggatggtgaagggaatgttgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2781864 |
ttttagctaaggggaaaacatcaaatgcaattgcaaagttaatgaatttgacacctgatactgctatattgttgagtttggatggtgaagggaatgttgt |
2781765 |
T |
|
| Q |
311 |
tggggaggaagaaattgatagtaggttggttcagaagaatgatgtgattaagattattccgggtgcaaaagttgcttctgatgggctcgttgtttggggg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2781764 |
tggggaggaagaaattgatagtaggttggttcagaagaatgatgtgattaagattattccgggtgcaaaagttgcttctgatgggctcgttgtttggggg |
2781665 |
T |
|
| Q |
411 |
cagagtcatgtgaatgagagtatgataacaggtgaggcacgtcccgtgtctaagaggaaagatgatactgttattggtggaactttgaatgaaaatggtg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2781664 |
cagagtcatgtgaatgagagtatgataacaggtgaggcacgtcccgtgtctaagaggaaagatgatactgttattggtggaactttgaatgaaaatggtg |
2781565 |
T |
|
| Q |
511 |
tcttgcatgtaaaggc |
526 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2781564 |
tcttgcatgtaaaggc |
2781549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 320 - 525
Target Start/End: Original strand, 33918560 - 33918765
Alignment:
| Q |
320 |
agaaattgatagtaggttggttcagaagaatgatgtgattaagattattccgggtgcaaaagttgcttctgatgggctcgttgtttgggggcagagtcat |
419 |
Q |
| |
|
|||||||||||| |||||| | ||||||||||||||||| || || | ||||| || ||||| || || ||||| | ||||||||||| || |||||| |
|
|
| T |
33918560 |
agaaattgatagcaggttgatacagaagaatgatgtgatcaaagttgtgccgggcgcgaaagtagcatcagatggttttgttgtttggggacaaagtcat |
33918659 |
T |
|
| Q |
420 |
gtgaatgagagtatgataacaggtgaggcacgtcccgtgtctaagaggaaagatgatactgttattggtggaactttgaatgaaaatggtgtcttgcatg |
519 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| || || |||||| ||| | ||||| || |||||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
33918660 |
gtaaatgagagtatgataactggtgaggcaaagcctgttgctaagatgaagggtgatatggtgattggtggtactgtgaatgaaaatggtgttttgcatg |
33918759 |
T |
|
| Q |
520 |
taaagg |
525 |
Q |
| |
|
| |||| |
|
|
| T |
33918760 |
ttaagg |
33918765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 320 - 525
Target Start/End: Original strand, 33901034 - 33901239
Alignment:
| Q |
320 |
agaaattgatagtaggttggttcagaagaatgatgtgattaagattattccgggtgcaaaagttgcttctgatgggctcgttgtttgggggcagagtcat |
419 |
Q |
| |
|
|||||||||||| |||||| | ||||||||||||||||| || || | ||||| | ||||| || || ||||| | ||||||||||| || |||||| |
|
|
| T |
33901034 |
agaaattgatagcaggttgatacagaagaatgatgtgatcaaagttgtgccgggcacgaaagtagcatcggatggttttgttgtttggggacaaagtcat |
33901133 |
T |
|
| Q |
420 |
gtgaatgagagtatgataacaggtgaggcacgtcccgtgtctaagaggaaagatgatactgttattggtggaactttgaatgaaaatggtgtcttgcatg |
519 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| || || |||||| ||| | ||||| || |||||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
33901134 |
gtaaatgagagtatgataactggtgaggcaaagcctgttgctaagatgaagggtgatatggtgattggtggtactgtgaatgaaaatggtgttttgcatg |
33901233 |
T |
|
| Q |
520 |
taaagg |
525 |
Q |
| |
|
| |||| |
|
|
| T |
33901234 |
ttaagg |
33901239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 33900765 - 33900818
Alignment:
| Q |
54 |
atggatgtgctgatagcactgggaacaaatgcagcttatttctactctgtttat |
107 |
Q |
| |
|
|||||| || |||||||| | ||||||||||||||||||||||| ||||||||| |
|
|
| T |
33900765 |
atggatttgttgatagcattaggaacaaatgcagcttatttctattctgtttat |
33900818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University