View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20287_low_7 (Length: 512)

Name: NF20287_low_7
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20287_low_7
NF20287_low_7
[»] chr1 (14 HSPs)
chr1 (33-273)||(27787117-27787357)
chr1 (40-273)||(10494322-10494557)
chr1 (45-273)||(25537238-25537467)
chr1 (33-269)||(29099070-29099305)
chr1 (33-273)||(15495511-15495739)
chr1 (33-269)||(2077804-2078047)
chr1 (97-269)||(47896356-47896529)
chr1 (100-273)||(8038867-8039040)
chr1 (99-273)||(14351674-14351850)
chr1 (147-276)||(11814172-11814302)
chr1 (191-273)||(26842704-26842785)
chr1 (131-273)||(4654144-4654286)
chr1 (186-273)||(40581081-40581168)
chr1 (62-141)||(26842335-26842414)
[»] chr7 (8 HSPs)
chr7 (40-276)||(21590920-21591155)
chr7 (33-269)||(32978752-32978986)
chr7 (33-269)||(43048074-43048312)
chr7 (97-273)||(34293848-34294022)
chr7 (33-273)||(24717541-24717773)
chr7 (97-273)||(10365421-10365597)
chr7 (66-273)||(31038623-31038832)
chr7 (60-237)||(7437029-7437207)
[»] chr5 (16 HSPs)
chr5 (33-269)||(26331795-26332032)
chr5 (33-242)||(26331454-26331662)
chr5 (40-273)||(40600273-40600508)
chr5 (33-269)||(40680514-40680736)
chr5 (33-273)||(42269187-42269429)
chr5 (24-273)||(11470351-11470606)
chr5 (141-269)||(24867553-24867682)
chr5 (25-210)||(30248226-30248408)
chr5 (33-273)||(42220948-42221182)
chr5 (66-213)||(34574554-34574700)
chr5 (99-273)||(12155743-12155919)
chr5 (441-494)||(10000550-10000603)
chr5 (68-161)||(23247146-23247238)
chr5 (66-138)||(39938472-39938544)
chr5 (33-119)||(24867464-24867550)
chr5 (201-276)||(1377540-1377616)
[»] chr2 (13 HSPs)
chr2 (33-269)||(40899757-40899994)
chr2 (33-273)||(6705144-6705371)
chr2 (33-269)||(27888306-27888542)
chr2 (33-242)||(9910133-9910343)
chr2 (33-269)||(1532833-1533068)
chr2 (43-269)||(33543934-33544158)
chr2 (99-198)||(14951331-14951430)
chr2 (97-262)||(38531850-38532017)
chr2 (124-269)||(28165372-28165518)
chr2 (102-273)||(6186758-6186930)
chr2 (34-125)||(38531756-38531847)
chr2 (63-130)||(14951265-14951331)
chr2 (184-276)||(17374628-17374721)
[»] chr3 (7 HSPs)
chr3 (33-269)||(46743263-46743500)
chr3 (40-273)||(52991683-52991916)
chr3 (60-269)||(3460843-3461052)
chr3 (100-269)||(31625487-31625658)
chr3 (99-269)||(52984784-52984956)
chr3 (33-170)||(31698825-31698963)
chr3 (188-242)||(54594295-54594349)
[»] chr4 (11 HSPs)
chr4 (33-273)||(12130144-12130384)
chr4 (45-273)||(56092694-56092921)
chr4 (33-273)||(14440738-14440969)
chr4 (33-276)||(45872649-45872891)
chr4 (44-269)||(42677988-42678211)
chr4 (105-213)||(44496494-44496600)
chr4 (99-269)||(52635142-52635314)
chr4 (102-270)||(55728145-55728316)
chr4 (61-232)||(19676057-19676229)
chr4 (60-135)||(7971686-7971761)
chr4 (40-130)||(55728319-55728409)
[»] chr8 (7 HSPs)
chr8 (45-273)||(15050426-15050655)
chr8 (40-273)||(10181590-10181823)
chr8 (33-187)||(39580428-39580582)
chr8 (33-269)||(5514810-5515047)
chr8 (97-269)||(38498873-38499043)
chr8 (66-273)||(25142527-25142736)
chr8 (40-163)||(3763380-3763503)
[»] scaffold0083 (1 HSPs)
scaffold0083 (33-270)||(2671-2912)
[»] scaffold0974 (1 HSPs)
scaffold0974 (40-269)||(2796-3023)
[»] chr6 (13 HSPs)
chr6 (33-269)||(31026659-31026885)
chr6 (97-269)||(11366395-11366565)
chr6 (40-269)||(10772391-10772614)
chr6 (34-130)||(24842817-24842913)
chr6 (141-263)||(10670483-10670604)
chr6 (158-273)||(78409-78525)
chr6 (97-269)||(9566477-9566642)
chr6 (158-267)||(30844920-30845030)
chr6 (99-189)||(24350678-24350768)
chr6 (114-269)||(32747997-32748153)
chr6 (40-120)||(24350591-24350671)
chr6 (154-213)||(24842714-24842774)
chr6 (33-84)||(30845097-30845149)
[»] scaffold0027 (1 HSPs)
scaffold0027 (43-276)||(2420-2652)
[»] scaffold0005 (1 HSPs)
scaffold0005 (97-269)||(269597-269762)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 33 - 273
Target Start/End: Original strand, 27787117 - 27787357
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  27787117 tttggtttttggagatgacttcttggtttggtgtttagtttttattggtttcgagggccctcagtggagggtgtttttgatttgcttgtagaagtttgta 27787216  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    ||||||||||||  |||||||||||||||||||||||||| |  ||| ||||| ||| ||||||| | ||||||||||||| | || |||||||| ||||    
T  27787217 tttgatacatggctgtttgtttgggtgttccgcatatatatg-gacacttttcgtttgtatgttgttctttaagtctcctagcttagcattccttgtgct 27787315  T
Q  233 tgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  27787316 tgctaagattctttgtgctttaaataaatttcattttagctt 27787357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 40 - 273
Target Start/End: Complemental strand, 10494557 - 10494322
Alignment:
Q  40 tttggagatgactttttggattggt-gtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgat 138  Q
    |||||||||||||||| || || || |||||||||||||| |||||| | |||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  10494557 tttggagatgacttttgggttttgttgtttagtttttattggtttcgggagcccttagtggagggtatttttggtttgtttgtagaagtttgtatttgat 10494458  T
Q  139 acatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaa 238  Q
      ||| | |||||||||||||||| |||||||||| ||||| ||||||||| ||||||||| ||||||||||||| ||  ||||||||| |||||||||     
T  10494457 gtatgagtgtttgtttgggtgttctgcatatatacaacacacttttcctttgtatgttgctatttaagtctcctagccagacattccttgtgcttgctag 10494358  T
Q  239 gatt-tttgtgttttaaataaatttcattttagctt 273  Q
    |||| |||| ||||| ||||||||||||||||||||    
T  10494357 gattctttgcgttttgaataaatttcattttagctt 10494322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 45 - 273
Target Start/End: Complemental strand, 25537467 - 25537238
Alignment:
Q  45 agatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgg 144  Q
    |||||| || |||| |||||||||||| | |||| ||||||||| ||||  ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  25537467 agatgatttcttggtttggtgtttagtctctatt-gtttcgaggaccctccgtggaaggtgtttttggtttgtttgtagaagtttgtatttgatacatgg 25537369  T
Q  145 gggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttg-ctttttaagtctcctaacctaacattccttatgcttgctaagatt- 242  Q
    | ||||||||| ||||||||||||||||||||||| ||||||| | |||||||  ||||||||||||||| |||| ||||| || ||||||||| ||||     
T  25537368 gtgtttgtttgtgtgttccgcatatatacgacacacttttcctgtgtatgttgtttttttaagtctcctagcctagcattctttgtgcttgctaggattc 25537269  T
Q  243 tttgtgttttaaataaatttcattttagctt 273  Q
    ||||  | |||||||||| ||||||||||||    
T  25537268 tttgcatgttaaataaatatcattttagctt 25537238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 29099305 - 29099070
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| |||||||||||||| ||||   |||||||||| | |||| ||||||||||||||  |||||||||||||||| |||||| |||||||||||||    
T  29099305 tttggtttttggagatgacttcttggtgcggtgtttagtctctattggtttcgagggccctcagtggagggtgtttttggtttgttcgtagaagtttgta 29099206  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    ||||||||||| | ||||||||   ||||||||||||||||| |||| |||   | | ||||||| ||||||||||||||| |||| | |||||| ||||    
T  29099205 tttgatacatgagtgtttgtttatatgttccgcatatatacggcacacttt--gtgtgtatgttgttttttaagtctcctagcctagcgttccttgtgct 29099108  T
Q  233 tgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  29099107 tgctaggattctttgtgttttaaataaatttcatttta 29099070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 33 - 273
Target Start/End: Complemental strand, 15495739 - 15495511
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| ||||| |||||||| |||| |||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||||||||||| |    
T  15495739 tttggtttttggtgatgacttcttggtttggtgtttagtttttattgctttcgagggccctcagtggagggtgtttttgatttgtttgtagaagtttgca 15495640  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    |||| ||||||||            ||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||| |||| |||| ||| |||     
T  15495639 tttg-tacatggg------------tgttccgcatatataaggcacacttttcctttgtatgttgctttttaagtctcctagcctagcatttcttgtgca 15495553  T
Q  233 tgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    ||||| |||| || ||||||||||||||||||||||||||||    
T  15495552 tgctatgattcttagtgttttaaataaatttcattttagctt 15495511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 33 - 269
Target Start/End: Original strand, 2077804 - 2078047
Alignment:
Q  33 tttggtctttggagatgactttttggatt-ggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagttt-- 129  Q
    |||||| ||||||||||||||||||| || ||||||||||||||||| |||||  |||||||| ||| |||||||||||| |||||||||||||||||      
T  2077804 tttggtttttggagatgactttttggttttggtgtttagtttttattggtttcaggggcccttagtgaagggtgtttttggtttgtttgtagaagtttaa 2077903  T
Q  130 ---gtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattcct 226  Q
       |||||||||  ||||| |||||||||||| |||||||||||||||||||| |||||||||  ||||| ||  |||||||||||| || | |||||||    
T  2077904 tttgtatttgatgaatgggtgtttgtttgggttttccgcatatatacgacacagttttcctttgcatgttcctacttaagtctcctagccaagcattcct 2078003  T
Q  227 tatgcttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    |||| |||||| |||| ||||  |||| |||||| |||||||||    
T  2078004 tatgtttgctaggattctttgcattttgaataaacttcatttta 2078047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 47896529 - 47896356
Alignment:
Q  97 tggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgtt 196  Q
    ||||||||||||||| |||| | ||| |||||| ||||||||||||||| |||||||||| |||||||||||||||||  ||| |||| |||| ||||||    
T  47896529 tggagggtgtttttggtttgctcgtaaaagtttatatttgatacatgggtgtttgtttggatgttccgcatatatacg-gacactttttctttgtatgtt 47896431  T
Q  197 gct-ttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    ||| |||||||||| ||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  47896430 gctcttttaagtcttctaacttaacattccttatgcttgctaggattctttgtattttaaataaatttcatttta 47896356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 100 - 273
Target Start/End: Complemental strand, 8039040 - 8038867
Alignment:
Q  100 agggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgct 199  Q
    |||||||||||| | || | ||| |||||| |||||||| |||| | ||||||||||||||||||||||||||| | ||| |||||||||||||| || |    
T  8039040 agggtgtttttggtctgctcgtaaaagtttatatttgatgcatgagtgtttgtttgggtgttccgcatatatac-atacacttttcctttatatggtgtt 8038942  T
Q  200 ttttaagtctcctaacctaacattccttatgcttgctaaga-tttttgtgttttaaataaatttcattttagctt 273  Q
     ||||||||| ||| | || |||||||| ||||||||| || |||||||||||||||||||||||||||||||||    
T  8038941 ctttaagtcttctagcttagcattccttgtgcttgctaggattttttgtgttttaaataaatttcattttagctt 8038867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 14351674 - 14351850
Alignment:
Q  99 gagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgc 198  Q
    |||||| |||||  ||||||||||||||||| ||||||||  ||||  ||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  14351674 gagggtatttttagtttgtttgtagaagtttatatttgatgtatggttgtttgtttgggtgttccgcatatatacgacacacttttcctttgtatgttgc 14351773  T
Q  199 t-ttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    |  ||||||  |||||  ||| |||||||| |||| |||| |||| ||||  |||| ||||||||||||||||||||    
T  14351774 tactttaagattcctagtctagcattccttgtgctcgctaggattctttgcattttgaataaatttcattttagctt 14351850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 147 - 276
Target Start/End: Complemental strand, 11814302 - 11814172
Alignment:
Q  147 gtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagatt-ttt 245  Q
    ||||||||||||||| |||||||||| | |||| | ||||||| ||||||||| ||||||||||||| || | | |||||| |||||| || |||| |||    
T  11814302 gtttgtttgggtgtttcgcatatataaggcacaatgttcctttgtatgttgctatttaagtctcctagccaagctttccttctgcttgttaggattcttt 11814203  T
Q  246 gtgttttaaataaatttcattttagcttttt 276  Q
    | ||||| |||||||||||||||||||||||    
T  11814202 gcgttttgaataaatttcattttagcttttt 11814172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 191 - 273
Target Start/End: Complemental strand, 26842785 - 26842704
Alignment:
Q  191 tatgttgctttttaagtctcctaacctaacattccttatgcttgctaagatttttgtgttttaaataaatttcattttagctt 273  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||| || || |||||||||||||||||||||||||||||    
T  26842785 tatgttgctttttaagtctcctaacctagcattccttgtgcttgctagga-ttctgtgttttaaataaatttcattttagctt 26842704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 131 - 273
Target Start/End: Original strand, 4654144 - 4654286
Alignment:
Q  131 tatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatg 230  Q
    ||||||||||||| | |||| |||| ||||||| |||||||| || ||| ||| ||||| ||||||||| ||||||||| ||| | || |||||| | ||    
T  4654144 tatttgatacatgagtgtttatttgagtgttccacatatata-gagacactttccctttgtatgttgctctttaagtcttctagcttagcattccctgtg 4654242  T
Q  231 cttgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    ||||||| |||| |||||||||||||||| ||||||||||||||    
T  4654243 cttgctaggattctttgtgttttaaataattttcattttagctt 4654286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 40581081 - 40581168
Alignment:
Q  186 ctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    |||| |||||||||||| |||||| ||| | || |||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  40581081 ctttgtatgttgctttt-aagtcttctagcttagcattccttgtgcttgctaagattctttgtgttttaaataaatttcattttagctt 40581168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 26842335 - 26842414
Alignment:
Q  62 ggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgataca 141  Q
    |||||||||| | |||| ||||||||||||||  || ||||||||||||| ||||||||||||||||| |||||||||||    
T  26842335 ggtgtttagtctgtattggtttcgagggccctctgtagagggtgtttttggtttgtttgtagaagtttatatttgataca 26842414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 40 - 276
Target Start/End: Original strand, 21590920 - 21591155
Alignment:
Q  40 tttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgata 139  Q
    |||||||||||||| |||  |||||||||| |||||||| |||||||||||  | ||||||||||||||||| |||||||||| ||||||||||||||||    
T  21590920 tttggagatgacttcttgatttggtgtttaatttttattggtttcgagggctttcggtggagggtgtttttggtttgtttgtaaaagtttgtatttgata 21591019  T
Q  140 catgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaag 239  Q
    ||||| ||||||||||||||||| |||||||||||||||| |||||  || ||||||  ||||||||||||||||| || |||||||| |||||||||      
T  21591020 catggaggtttgtttgggtgttctgcatatatacgacacacttttctcttgtatgtt--tttttaagtctcctaacttagcattccttgtgcttgctaga 21591117  T
Q  240 att-tttgtgttttaaataaatttcattttagcttttt 276  Q
    ||| ||||||||||||||||||||||||||| ||||||    
T  21591118 attctttgtgttttaaataaatttcattttaacttttt 21591155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 32978986 - 32978752
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| |||||||||||||| |||| || ||||||||||||||||  |||| ||||| ||  ||||||||||||||| ||||| ||||||||||||||     
T  32978986 tttggtttttggagatgacttcttggtttagtgtttagtttttattgatttcaagggcgctcagtggagggtgttttttatttgcttgtagaagtttgtt 32978887  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    ||||||||||| | |||||||||| || |||||||||| || | ||| ||||| |||||||||| || |||||||||| || | ||| ||||||||||||    
T  32978886 tttgatacatgagtgtttgtttggatgatccgcatataaac-agacacttttcttttatatgttactctttaagtctcatagcttaatattccttatgct 32978788  T
Q  233 tgctaagatttttgtgttttaaataaatttcatttta 269  Q
    ||||| || || |||||||||| ||||||||||||||    
T  32978787 tgctagga-ttctgtgttttaattaaatttcatttta 32978752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 33 - 269
Target Start/End: Original strand, 43048074 - 43048312
Alignment:
Q  33 tttggtctttggagatgactttttggat-tggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgt 131  Q
    |||||| ||||||||||||||||| | | | |||||||||||||||| |||||| |||||||  || ||||||||||||| |||||||||||||||||||    
T  43048074 tttggtttttggagatgacttttttgttctagtgtttagtttttattggtttcgggggccctcagtagagggtgtttttggtttgtttgtagaagtttgt 43048173  T
Q  132 atttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgc 231  Q
    ||||||| ||||   ||||||||| ||||||  ||||||||||||||||||||||||| |||||| ||  ||||||||||||||| | |||||||| ||     
T  43048174 atttgatgcatgattgtttgtttgagtgttctacatatatacgacacatttttcctttgtatgttcctacttaagtctcctaaccaagcattccttgtgt 43048273  T
Q  232 ttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    ||| || |||| ||| | |||| |||||| |||||||||    
T  43048274 ttgttaggattctttatattttgaataaacttcatttta 43048312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 97 - 273
Target Start/End: Original strand, 34293848 - 34294022
Alignment:
Q  97 tggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgtt 196  Q
    ||||||||||||||| |||  ||||| |||||| ||||||||||||||| ||||||||| || |||||||||||||||  ||| ||||||||| |||| |    
T  34293848 tggagggtgtttttggtttacttgtaaaagtttatatttgatacatgggtgtttgtttgagtattccgcatatatacg-gacacttttcctttgtatggt 34293946  T
Q  197 gctttttaagtctcctaacctaacattccttatgcttgctaagatttttgtgttttaaataaatttcattttagctt 273  Q
    ||| ||| ||||| ||| | |||||||  || ||||||||| || || |||||||||||||||||||||||||||||    
T  34293947 gctctttcagtcttctagcttaacattttttgtgcttgctagga-ttctgtgttttaaataaatttcattttagctt 34294022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 33 - 273
Target Start/End: Complemental strand, 24717773 - 24717541
Alignment:
Q  33 tttggtctttggagatgactttttggat-tggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgt 131  Q
    |||||| ||||||||||||||||||| | |||||||||||||||||| |||| | |||||||  || ||||||||||||| ||||||||||             
T  24717773 tttggtttttggagatgactttttggttatggtgtttagtttttattggtttggtgggccctcagtagagggtgtttttggtttgtttgta--------- 24717683  T
Q  132 atttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgc 231  Q
     |||||| ||||   |||||||||||||||||||||||||||  |||| |||| |||| ||| || ||  ||||||||| || |  | |||||||| |||    
T  24717682 -tttgatgcatgaatgtttgtttgggtgttccgcatatatacatcacactttttctttgtatcttcctacttaagtctcatagctaagcattccttgtgc 24717584  T
Q  232 ttgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    ||||||||||| |||| ||||| |||||| |||||||||||||    
T  24717583 ttgctaagattctttgcgttttgaataaacttcattttagctt 24717541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 97 - 273
Target Start/End: Complemental strand, 10365597 - 10365421
Alignment:
Q  97 tggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgtt 196  Q
    ||||||||||||||| |||| | ||| |||||| ||||||||||||| | |||||||||| |||| | ||||||||| |  || |||||| || |||| |    
T  10365597 tggagggtgtttttggtttgctcgtaaaagtttatatttgatacatgagtgtttgtttggctgttgcacatatatac-agtcacttttcccttctatggt 10365499  T
Q  197 gctttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    ||| ||||||||| ||| | || ||||| || ||||||||| |||| |||||||||||||||||||||||||||||||    
T  10365498 gctctttaagtcttctagcttagcattctttgtgcttgctaggattctttgtgttttaaataaatttcattttagctt 10365421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 273
Target Start/End: Complemental strand, 31038832 - 31038623
Alignment:
Q  66 tttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgt----agaagtttgtatttgatacatgggggtttgtttgggtgtt 161  Q
    |||||||| ||||||||||| ||||| |  ||||||| |||||||  |||||||||    | ||||||| |||||||  ||| | ||||||||| |||||    
T  31038832 tttagtttatatttgtttcgggggcc-tcagtggaggttgttttt--tttgtttgttcttataagtttgcatttgatgtatgagtgtttgtttgagtgtt 31038736  T
Q  162 ccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaat 260  Q
    |||  ||||||||||||| ||||||||| ||||||||| ||||||| || || |||| |||||||| |||| | ||||||| |||  |||||||||||||    
T  31038735 ccgtgtatatacgacacacttttcctttgtatgttgctatttaagtatcttagcctagcattccttgtgctagataagattctttacgttttaaataaat 31038636  T
Q  261 ttcattttagctt 273  Q
    |||||||||||||    
T  31038635 ttcattttagctt 31038623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 237
Target Start/End: Complemental strand, 7437207 - 7437029
Alignment:
Q  60 ttggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgt-atttgatacatgggggtttgtttgggt 158  Q
    ||||||||||||||||||| ||||||||  ||||   ||||||||||| ||  ||||||||||||||||| | |||||||    ||  |  |||||  ||    
T  7437207 ttggtgtttagtttttattggtttcgagtaccctcaatggagggtgttgttagtttgtttgtagaagttttttatttgatgttcggatgcgtgtttcagt 7437108  T
Q  159 gttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgcta 237  Q
    ||||||||||||||||  ||| |||| |||| ||||||||| ||||||||||||| |||| || |||| ||||| ||||    
T  7437107 gttccgcatatatacggtacactttttctttgtatgttgctatttaagtctcctagcctagcaatcctcatgctagcta 7437029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 1e-67; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 33 - 269
Target Start/End: Original strand, 26331795 - 26332032
Alignment:
Q  33 tttggtctttggagatgacttt-ttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgt 131  Q
    |||||| ||||||||||||||| |||| ||||||| ||||||||||| |||||||||||| | ||||| |||||||||||||| ||||||||||| ||||    
T  26331795 tttggtttttggagatgactttattggtttggtgtctagtttttattggtttcgagggcc-tcggtggtgggtgtttttgattcgtttgtagaagattgt 26331893  T
Q  132 atttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgc 231  Q
    |||||||||||| | |||||||||| |||||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||| |||| |||||||| |||    
T  26331894 atttgatacatgagtgtttgtttggatgttccgcatatatacgaaacacttttcctttgtatgttgctttttaaatctcctagcctagcattccttgtgc 26331993  T
Q  232 ttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    |||||| |||| | | |||||||||||||||||||||||    
T  26331994 ttgctaggattctatttgttttaaataaatttcatttta 26332032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 33 - 242
Target Start/End: Original strand, 26331454 - 26331662
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| |||||||||||||| |||| ||||||| ||||||||||| |||||||||||| | ||||| || ||||||||||| ||||||||||| |||||    
T  26331454 tttggtttttggagatgacttattggtttggtgtctagtttttattggtttcgagggcc-tcggtggtggatgtttttgattcgtttgtagaagattgta 26331552  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    ||||||||||| | |||||||||| |||||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||| |||| |||||||| ||||    
T  26331553 tttgatacatgagtgtttgtttggatgttccgcatatatacgaaacacttttcctttgtatgttgctttttaaatctcctagcctagcattccttgtgct 26331652  T
Q  233 tgctaagatt 242  Q
    ||||| ||||    
T  26331653 tgctaggatt 26331662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 40 - 273
Target Start/End: Original strand, 40600273 - 40600508
Alignment:
Q  40 tttggagatgactttttggat-tggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgat 138  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||  ||||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  40600273 tttggagatgactttttggttctggtgtttagtttttattggtttcaggggccctcggtggagggtgtttttggtttgtttgttgaagtttgtatttgat 40600372  T
Q  139 acatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaa 238  Q
     |||| | ||||||||||||||||| |||||| ||  |||| ||||||||| ||| || ||  ||||||||||||||| ||||||||||||| ||||||     
T  40600373 gcatgagtgtttgtttgggtgttccacatatacacaccacacttttcctttgtatattcctacttaagtctcctaaccaaacattccttatgtttgctag 40600472  T
Q  239 gatt-tttgtgttttaaataaatttcattttagctt 273  Q
    |||| |||| ||||| |||||| || ||||||||||    
T  40600473 gattctttgcgttttgaataaactttattttagctt 40600508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 40680736 - 40680514
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| ||||| ||||||| || || ||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  40680736 tttggtttttggtgatgactctt-ggtttggtgtttagtttttattggtttcgagggccctcagtggagggtgtttttggtttgtttgtagaagtttgta 40680638  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    |||| ||||||||            ||||||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||||| |||||||| ||||    
T  40680637 tttg-tacatggg------------tgttccgcatatatacggcacacttttcctttgtatgttgctttttaagtctcttaacctagcattccttgtgct 40680551  T
Q  233 tgctaagatttttgtgttttaaataaatttcatttta 269  Q
    |||||  || || ||||||||||||||||||||||||    
T  40680550 tgctagaatcttagtgttttaaataaatttcatttta 40680514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 33 - 273
Target Start/End: Original strand, 42269187 - 42269429
Alignment:
Q  33 tttggtctttggagatgactttttggatt-ggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgt 131  Q
    |||||| ||||||||||||||||||| |  |||||| |||||||||| |||| | |||| ||   ||||||||||||||| |||||||||||||||||||    
T  42269187 tttggtttttggagatgactttttggttacggtgttcagtttttattggtttggggggctctcaatggagggtgtttttggtttgtttgtagaagtttgt 42269286  T
Q  132 atttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgc 231  Q
    ||||||| ||||   ||||||||| ||||||||||||||||| ||||| |||| || | |||||| ||  |||||||||||| |  | ||||||||||||    
T  42269287 atttgatgcatgaatgtttgtttgagtgttccgcatatatacaacacactttttctctgtatgttcctacttaagtctcctagctaagcattccttatgc 42269386  T
Q  232 ttgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    ||||||||||| |||| ||||| |||||| |||||||||||||    
T  42269387 ttgctaagattctttgcgttttgaataaacttcattttagctt 42269429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 24 - 273
Target Start/End: Complemental strand, 11470606 - 11470351
Alignment:
Q  24 agtttagcgtttggtctttggagatgactttttggattgg-tgtttagtttttatttgtttcgag--ggcccttggtggagggtgtttttgatttgtttg 120  Q
    |||||||  |||||| ||| ||||||| ||| ||| || | ||||| ||||||||| ||||| ||  |||| ||||||||||||||||||| ||||||||    
T  11470606 agtttagattttggttttttgagatgattttatggttttgatgttttgtttttattggtttcaagtgggccattggtggagggtgtttttggtttgtttg 11470507  T
Q  121 tagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgct-ttttaagtctcctaacctaa 219  Q
    ||||||||||||||| |||  | |  |||||||| | || || | |||||||||||||| ||||||||| ||||||||| ||||||| |||||| | ||     
T  11470506 tagaagtttgtatttaatatttagatgtttgtttagatgctctgtatatatacgacacacttttcctttgtatgttgctattttaagactcctagcttag 11470407  T
Q  220 cattccttatgcttgct--aagatttttgtgttttaaataaatttcattttagctt 273  Q
    |||| |||||||| | |  ||  |||||||||||||||||||||||||||||||||    
T  11470406 catttcttatgctcgttggaatttttttgtgttttaaataaatttcattttagctt 11470351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 141 - 269
Target Start/End: Original strand, 24867553 - 24867682
Alignment:
Q  141 atgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaaga 240  Q
    ||||| |||||||||| ||||||||||||| ||||||||||||| |||| || | |||||||||||||| |||||||| |||||||| |||||||||  |    
T  24867553 atgggtgtttgtttggatgttccgcatatacacgacacattttttctttgtacgctgctttttaagtcttctaacctatcattccttgtgcttgctagta 24867652  T
Q  241 tt-tttgtgttttaaataaatttcatttta 269  Q
    || |||||||||||||||||||||||||||    
T  24867653 ttctttgtgttttaaataaatttcatttta 24867682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 30248408 - 30248226
Alignment:
Q  25 gtttagcgtttggtctttggagatgactttttggatt-ggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtag 123  Q
    |||||| ||||| | || |||||||||||| ||| || ||||||||||||||||| ||||||  ||||||| |||||||||||||||| |||||||||||    
T  30248408 gtttagagtttgtttttgggagatgactttatggttttggtgtttagtttttattggtttcggaggcccttagtggagggtgtttttggtttgtttgtag 30248309  T
Q  124 aagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctc 210  Q
    | |||||||||||||| ||| | ||||||||| ||||| ||| |||    | |||| |||| |||| ||||||||| ||||||||||    
T  30248308 acgtttgtatttgatatatgagtgtttgtttgagtgtttcgcgtat----ggcacactttttctttgtatgttgctatttaagtctc 30248226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 33 - 273
Target Start/End: Complemental strand, 42221182 - 42220948
Alignment:
Q  33 tttggtctttggagatgactttttggatt-ggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgt 131  Q
    |||||| || |||||||||||| ||| || ||||||||||||||||| |||||| |||||||   ||||||||||||||        |||| |||||| |    
T  42221182 tttggttttgggagatgactttgtggttttggtgtttagtttttattggtttcgggggccctcaatggagggtgttttt--------tgtaaaagttttt 42221091  T
Q  132 atttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgc 231  Q
    |||||||  ||| | ||||||||  |||||||||||| ||| |  ||||||||||||| ||||||||| ||||||||||||| |||| | |||||  |||    
T  42221090 atttgatgtatgagtgtttgttttagtgttccgcatacatatggtacatttttcctttgtatgttgctatttaagtctcctagcctagccttcctcgtgc 42220991  T
Q  232 ttgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    | |||| |||| |||| ||||| ||| ||||||||||||||||    
T  42220990 tagctaggattctttgcgttttgaattaatttcattttagctt 42220948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 213
Target Start/End: Original strand, 34574554 - 34574700
Alignment:
Q  66 tttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgc 165  Q
    ||||||||||||| ||||| ||||||||  ||||||| |||||||| ||||||| |||||||||| |||||||  ||| | ||||| ||| ||||||||     
T  34574554 tttagtttttattggtttc-agggccctcagtggaggttgtttttggtttgtttttagaagtttgcatttgatgtatgagtgtttgcttgagtgttccgt 34574652  T
Q  166 atatatacgacacatttttcctttatatgttgctttttaagtctccta 213  Q
     ||||||||||||| |||| |||| ||||||||| ||||||| |||||    
T  34574653 gtatatacgacacactttttctttgtatgttgctatttaagtatccta 34574700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 99 - 273
Target Start/End: Complemental strand, 12155919 - 12155743
Alignment:
Q  99 gagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgc 198  Q
    |||||| |||||| ||||||||||||||||| ||||||||  |||   ||||||||| |||||||||||| ||||| | || |||| |||| ||||||||    
T  12155919 gagggtatttttggtttgtttgtagaagtttatatttgatgtatgattgtttgtttgagtgttccgcatacatacggcgcactttttctttgtatgttgc 12155820  T
Q  199 t-ttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    |  ||||||  |||||  ||| |||||||| || | |||| |||| ||||  |||| ||||||||||||||||||||    
T  12155819 tactttaagattcctagtctagcattccttgtgatcgctaggattctttgcattttgaataaatttcattttagctt 12155743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 441 - 494
Target Start/End: Original strand, 10000550 - 10000603
Alignment:
Q  441 tctcggctgtcaaaggtgggaggtaacattctccactttctacatttgtcacat 494  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  10000550 tctcggttgtcaaaggtgggaggtaacattctccactttctgcatttgtcacat 10000603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 23247146 - 23247238
Alignment:
Q  68 tagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgtt 161  Q
    ||||||||||| ||||  |||||||| |||||||| |||||||| |||||||||||| |||||||||||||  ||| | ||||||||| |||||    
T  23247146 tagtttttattggtttt-agggccctcggtggaggatgtttttggtttgtttgtagacgtttgtatttgatgtatgagtgtttgtttgagtgtt 23247238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 39938544 - 39938472
Alignment:
Q  66 tttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgat 138  Q
    ||||||||||||| ||||||||||||||   |||||| |||||||| ||||||| ||||| |||| |||||||    
T  39938544 tttagtttttattggtttcgagggccctcaatggaggttgtttttggtttgtttttagaaatttgcatttgat 39938472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 24867464 - 24867550
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgttt 119  Q
    |||||| |||||||||||||| || | |||  |||||||||||||| |||||||||||||     |||||||||||||| |||||||    
T  24867464 tttggtttttggagatgacttctttgtttgacgtttagtttttattggtttcgagggcccgcataggagggtgtttttggtttgttt 24867550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 1377616 - 1377540
Alignment:
Q  201 tttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcattttagcttttt 276  Q
    |||||| |||||||||||||||||||| |||| | |||||||  ||| | ||| |||||||||||||||| ||||||    
T  1377616 tttaagactcctaacctaacattccttgtgctggttaagattaattgcgatttgaataaatttcattttaacttttt 1377540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 40899994 - 40899757
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| |||||||||| ||| |||| ||| ||||||||||||||| || |||||||||||  ||||||| |||||||| ||||||||||||||||||||    
T  40899994 tttggtttttggagatggcttcttggtttgatgtttagtttttattggtctcgagggccctcagtggaggatgtttttggtttgtttgtagaagtttgta 40899895  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||| ||||||||| || ||  ||| |||||||| ||||    
T  40899894 tttgatacatgggggtttgtttgagtgttctgcatatatacgacacacttttcctttgtatgttgttttttaagtatcatagtctagcattccttgtgct 40899795  T
Q  233 tgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    ||||| | || |||||||||||||||||||| ||||||    
T  40899794 tgctagggttctttgtgttttaaataaattttatttta 40899757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 33 - 273
Target Start/End: Complemental strand, 6705371 - 6705144
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| ||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  6705371 tttggtttttggtgatgacttcttggtttggtgtttagtttttattggtttcgagggccctcagtggagggtgtttttggtttgtttgtagaagtttgta 6705272  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    |||| ||||||||            |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| |||| |||||||||||||    
T  6705271 tttg-tacatggg------------tgttccgcatatatacgacacacttttcctttgtatgttgttttttaagtctcctagcctagcattccttatgct 6705185  T
Q  233 tgctaagatttttgtgttttaaataaatttcattttagctt 273  Q
    ||||  ||| || ||||||||||||||||||||||||||||    
T  6705184 tgctgggatcttagtgttttaaataaatttcattttagctt 6705144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 27888542 - 27888306
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| |||||||||||||| |||| ||| ||||||||||||||| ||||||||||||||   ||| |||||||||| ||||| |||| ||||||||||    
T  27888542 tttggtttttggagatgacttcttggtttgatgtttagtttttattggtttcgagggccctcaatggtgggtgttttttatttgcttgtggaagtttgta 27888443  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    ||||||||||| | ||||||||||||||||||||||||||||  ||| ||||||||| ||||||||| ||||| |||||||   || ||||| || ||||    
T  27888442 tttgatacatgagtgtttgtttgggtgttccgcatatatacg-gacacttttcctttgtatgttgctctttaattctcctagtttagcattcgttgtgct 27888344  T
Q  233 tgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    ||||| |||| ||| |||||||||||||||||||||||    
T  27888343 tgctaggattctttatgttttaaataaatttcatttta 27888306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 9910343 - 9910133
Alignment:
Q  33 tttggtctttggagatgactttttggat-tggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgt 131  Q
    |||||| ||||||||||||||||||| | |||||||||||||||||| |||| | ||||| |  |||||||||||||||| ||||| ||||||||||| |    
T  9910343 tttggtttttggagatgactttttggttatggtgtttagtttttattagtttggggggccttcagtggagggtgtttttggtttgtatgtagaagtttat 9910244  T
Q  132 atttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgc 231  Q
    ||||||  |||||| |||||||||| |||||||||||||||||||||| ||||||||| |||||| ||  ||||||||| || || |||||||||| |||    
T  9910243 atttgaatcatgggtgtttgtttggatgttccgcatatatacgacacacttttcctttgtatgttcctacttaagtctcatagccaaacattccttgtgc 9910144  T
Q  232 ttgctaagatt 242  Q
    |||||| ||||    
T  9910143 ttgctacgatt 9910133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 1533068 - 1532833
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| |||||||||||||| |||| ||||||||||| ||||||| |||| |||||||||| |||||||||||||||| |||  |||||||||||||||    
T  1533068 tttggtttttggagatgacttcttggtttggtgtttagcttttattggttttgagggcccttagtggagggtgtttttggtttacttgtagaagtttgta 1532969  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    ||||||||||||  | |||||||| |||||||||||||||  | ||| ||||| ||| ||||||||| ||||| ||||||||| ||  ||||||| | ||    
T  1532968 tttgatacatggatgattgtttggatgttccgcatatatat-agacacttttcgtttgtatgttgctctttaaatctcctaacttag-attccttgtact 1532871  T
Q  233 tgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    |  || |||| ||||||||| |||||||||||||||||    
T  1532870 tattaggattctttgtgtttgaaataaatttcatttta 1532833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 43 - 269
Target Start/End: Complemental strand, 33544158 - 33543934
Alignment:
Q  43 ggagatgactttttggatt-ggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgataca 141  Q
    |||||||||||| ||| || ||||||||||||||||| |||| | |||||||  |||||||||||||||| |||||||||||| |||||||||||||  |    
T  33544158 ggagatgactttgtggctttggtgtttagtttttattggttttgggggccctcagtggagggtgtttttggtttgtttgtagacgtttgtatttgatgta 33544059  T
Q  142 tgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagat 241  Q
    |||| ||||||||| |||||||||     ||||||||| ||||| ||| ||||||| | ||||||||||||||| ||  ||| || ||||| | || |||    
T  33544058 tgggtgtttgtttgagtgttccgc----gtacgacacacttttcttttgtatgttgttatttaagtctcctaacttagtatttctcatgctagttaggat 33543963  T
Q  242 t-tttgtgttttaaataaatttcatttta 269  Q
    | ||| |||||| ||||||||||||||||    
T  33543962 tctttctgttttgaataaatttcatttta 33543934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 14951331 - 14951430
Alignment:
Q  99 gagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgc 198  Q
    ||||||||||| | |||||| |||||||||| ||||||||  ||||  ||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  14951331 gagggtgttttcggtttgttcgtagaagtttatatttgatgtatggttgtttgtttgggtgttccgcatatatacgacacacttttcctttgtatgttgc 14951430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 38531850 - 38532017
Alignment:
Q  97 tggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgtt 196  Q
    ||||||||||||||| ||| | ||||||||||||||||||||  ||| | |||||||||| ||||||| |||||||| ||||| |||| |||| ||||||    
T  38531850 tggagggtgtttttggtttatatgtagaagtttgtatttgatgtatgagtgtttgtttggatgttccgtatatatacaacacactttttctttgtatgtt 38531949  T
Q  197 gct-ttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaattt 262  Q
    |||  |||||| ||||||  ||| | |||||| |||| |||| |||| |||| ||||| |||||||||    
T  38531950 gctactttaagactcctagtctagcgttccttgtgctcgctaggattatttgcgttttgaataaattt 38532017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 28165372 - 28165518
Alignment:
Q  124 aagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacatt 223  Q
    ||||||| |||||||  ||| | ||||||||| ||||||||  ||||||||||||| ||||||||||||||||||| ||||||| || || |||| ||||    
T  28165372 aagtttgcatttgatgtatgagtgtttgtttgagtgttccgtgtatatacgacacacttttcctttatatgttgctatttaagtatcttagcctagcatt 28165471  T
Q  224 ccttatgcttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    |||| |||| | ||||||| |||  ||||| |||||||| |||||||    
T  28165472 ccttgtgctagataagattatttacgttttgaataaattccatttta 28165518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 102 - 273
Target Start/End: Original strand, 6186758 - 6186930
Alignment:
Q  102 ggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgct-t 200  Q
    |||||||||| ||||||||||||||||| ||||||||  |||   ||||||||||||| ||||||||||||  ||||| ||||| ||| |||||| ||      
T  6186758 ggtgtttttggtttgtttgtagaagtttatatttgatgaatgattgtttgtttgggtgctccgcatatata-tacacacttttcatttgtatgtttctac 6186856  T
Q  201 tttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    ||||||  |||||  ||| |||| ||| |||| |||| |||| ||||  |||| ||||||||||||||||||||    
T  6186857 tttaagattcctagtctagcattgcttgtgctcgctaggattctttgcattttgaataaatttcattttagctt 6186930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 38531756 - 38531847
Alignment:
Q  34 ttggtctttggagatgactttttggatt-ggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaa 125  Q
    ||||| ||||||||||||||||||| || ||||||||||||||||| |||||| ||| |||  || || |||||||||| |||||||||||||    
T  38531756 ttggtttttggagatgactttttggttttggtgtttagtttttattggtttcg-ggggcctcagtagatggtgtttttggtttgtttgtagaa 38531847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 14951265 - 14951331
Alignment:
Q  63 gtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttg 130  Q
    |||||||||||||||| ||||| |||| |||  || ||||||||||||| ||||||||| ||||||||    
T  14951265 gtgtttagtttttattggtttc-aggggcctcagtagagggtgtttttggtttgtttgtggaagtttg 14951331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 17374721 - 17374628
Alignment:
Q  184 tcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagattt-ttgtgttttaaataaatttcattttagcttttt 276  Q
    |||||| ||| ||||| |||||| |||||| | ||||| ||||| |||| | |||||||  ||||| ||| ||||||||||||||||| |||||    
T  17374721 tcctttgtatattgctctttaagactcctagcttaacactccttgtgctggttaagattcattgtgattttaataaatttcattttagtttttt 17374628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 9e-65; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 33 - 269
Target Start/End: Original strand, 46743263 - 46743500
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| ||| |||||||||| |||| ||| ||||||||||||||| ||||||||||||||  ||||| |||||||||| |||| |||||||||||||||    
T  46743263 tttggtttttagagatgacttcttggtttgatgtttagtttttattggtttcgagggccctcagtggatggtgtttttggtttgcttgtagaagtttgta 46743362  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    ||||||||||||| | |||||||| ||||||||| |||||||| ||| ||||  ||| ||||||||| ||||| ||||||||| || |||||||| ||||    
T  46743363 tttgatacatgggtgattgtttggatgttccgcacatatacgaaacactttttgtttgtatgttgctctttaaatctcctaacttagcattccttgtgct 46743462  T
Q  233 tgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  46743463 tgctaggattctttgtgttttaaataaatttcatttta 46743500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 40 - 273
Target Start/End: Original strand, 52991683 - 52991916
Alignment:
Q  40 tttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgata 139  Q
    |||||||||||||| |||| |||||||||||| | |||| |||||||| |||||| | |||||||||||||| ||| ||||||||||||| |||||||||    
T  52991683 tttggagatgacttcttggtttggtgtttagtctctattggtttcgagagcccttcgaggagggtgtttttggtttatttgtagaagtttatatttgata 52991782  T
Q  140 catgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaag 239  Q
    ||  || ||||||||| || ||||| |||||||||||||| ||||| | | ||||||| |||||||||||||||||||| |||| ||| || |||||| |    
T  52991783 ca-aggtgtttgtttgtgtattccgtatatatacgacacaattttcatgtgtatgttgttttttaagtctcctaacctagcatttcttgtgtttgctagg 52991881  T
Q  240 att-tttgtgttttaaataaatttcattttagctt 273  Q
    ||| |||||||||||||||||||||||||||||||    
T  52991882 attctttgtgttttaaataaatttcattttagctt 52991916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 60 - 269
Target Start/End: Original strand, 3460843 - 3461052
Alignment:
Q  60 ttggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtg 159  Q
    ||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||||| |||| ||| ||||||||  ||||| ||||||||  |||    
T  3460843 ttggtgtttagtttttattggtttcgagggcc-tccgtggagggtgtttttggtttgtttgaagaaatttttatttgatgtatgggtgtttgtttcagtg 3460941  T
Q  160 ttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataa 258  Q
    |||||| ||||||||  ||| ||||||||| ||||||||| ||||||||| ||| |||| |||||||  |||| | || |||| |||  ||||| |||||    
T  3460942 ttccgcgtatatacggtacacttttcctttgtatgttgctatttaagtcttctagcctagcattcctcgtgctagttaggattctttacgttttgaataa 3461041  T
Q  259 atttcatttta 269  Q
    |||||||||||    
T  3461042 atttcatttta 3461052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 100 - 269
Target Start/End: Complemental strand, 31625658 - 31625487
Alignment:
Q  100 agggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgct 199  Q
    |||||||||||| |||||| |||||||||||||||||||   |||| ||||||||||||||||| ||||||||||||||| ||||||||| |||||||||    
T  31625658 agggtgtttttggtttgttggtagaagtttgtatttgatgtttgggtgtttgtttgggtgttccacatatatacgacacacttttcctttgtatgttgct 31625559  T
Q  200 -ttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
     | ||||  ||||||  |||  ||||||| |||| |||| |||| |||| ||||| ||||||||||||||||    
T  31625558 atattaaaactcctagtctagtattccttgtgctcgctatgattctttgcgttttgaataaatttcatttta 31625487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 99 - 269
Target Start/End: Original strand, 52984784 - 52984956
Alignment:
Q  99 gagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgc 198  Q
    ||||||||||||| |||||| |||||||||| ||||||||  ||    ||||||||||||||| |||||||| |||||||| |||| |||| |||||||     
T  52984784 gagggtgtttttggtttgttagtagaagtttatatttgatgtatcattgtttgtttgggtgtttcgcatatacacgacacactttttctttgtatgttgt 52984883  T
Q  199 t-ttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    |  ||||||  |||||| ||| ||||||||||||| | ||| ||| |||  ||||| ||||||||||||||||    
T  52984884 tactttaagattcctaatctagcattccttatgctcgttaaaattctttacgttttgaataaatttcatttta 52984956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 31698963 - 31698825
Alignment:
Q  33 tttggtctttggagatgactttttggat-tggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgt 131  Q
    |||||| ||||||||| ||||||||| | |||  | | |||||||||  ||| | ||| |||| ||| |||||||||||| |||||||||||||||||||    
T  31698963 tttggtttttggagattactttttggttatggcatattgtttttattgatttggggggtccttagtgaagggtgtttttggtttgtttgtagaagtttgt 31698864  T
Q  132 atttgatacatgggggtttgtttgggtgttccgcatata 170  Q
    |||||||  ||| | |||| |||||||||||| ||||||    
T  31698863 atttgatgtatgagtgtttatttgggtgttccacatata 31698825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 54594295 - 54594349
Alignment:
Q  188 ttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagatt 242  Q
    ||||||||||||||||||||||||||  ||| |||||||||| ||||||| ||||    
T  54594295 ttatatgttgctttttaagtctcctagtctagcattccttattcttgctaggatt 54594349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 33 - 273
Target Start/End: Complemental strand, 12130384 - 12130144
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||  |||||| ||||||||| |||||||||| |||||| ||    
T  12130384 tttggtttttggagatgacttattggtttggtgtttagtttttattggtttcgagggctctcagtggagagtgtttttggtttgtttgtaaaagtttcta 12130285  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    |||| |||||||| |||||||||||||||||||||||||||  |||| ||||| | | |||| |||||||||||||||||| |||| |||||||| |||     
T  12130284 tttg-tacatgggtgtttgtttgggtgttccgcatatatacatcacacttttcttctgtatgatgctttttaagtctcctagcctagcattccttctgca 12130186  T
Q  233 tgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    ||||| |||| || |||||||||||| |||||||||||||||    
T  12130185 tgctaggattcttagtgttttaaatagatttcattttagctt 12130144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 45 - 273
Target Start/End: Original strand, 56092694 - 56092921
Alignment:
Q  45 agatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgg 144  Q
    |||||| || |||| |||||||||||| | |||| ||||||||| ||||  |  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  56092694 agatgatttcttggtttggtgtttagtctctattggtttcgaggaccctccg--gagggtgtttttggtttgtttgtagaagtttgtatttgatacatgg 56092791  T
Q  145 gggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagatt-t 243  Q
      ||||||||| ||||||||||||||||||||||| ||||||| | ||| ||| ||||||| ||||||| |||| |||||||| ||||||||| |||| |    
T  56092792 atgtttgtttgtgtgttccgcatatatacgacacacttttcctgtgtatattgttttttaattctcctagcctagcattccttgtgcttgctaggattct 56092891  T
Q  244 ttgtgttttaaataaatttcattttagctt 273  Q
    |||  | |||||||||||||||||||||||    
T  56092892 ttgcatgttaaataaatttcattttagctt 56092921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 33 - 273
Target Start/End: Complemental strand, 14440969 - 14440738
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| |||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||   ||||||||||||||| ||||||||||||||||||||    
T  14440969 tttggtttttgaagatgacttcttggtttggtgtttagtttttattggtttcgagggccctccatggagggtgtttttggtttgtttgtagaagtttgta 14440870  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    |||     ||     |||||||||||||||||||||||||||||| | ||||||||  ||| ||| |||||||||||||||  |||||||| ||| ||||    
T  14440869 ttt-----at-----tttgtttgggtgttccgcatatatacgacaaacttttccttagtatattgttttttaagtctcctagtctaacatttcttgtgct 14440780  T
Q  233 tgctaagatt-tttgtgttttaaataaatttcattttagctt 273  Q
    || || |||| || ||||||||||||||||||||||||||||    
T  14440779 tgttaggattcttagtgttttaaataaatttcattttagctt 14440738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 33 - 276
Target Start/End: Complemental strand, 45872891 - 45872649
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| |||||||||||||| | || ||||||| ||||||||||| |||||||||||| |  |||| | || |||||| ||| ||||||||||||||||    
T  45872891 tttggtttttggagatgacttatgggtttggtgtctagtttttattggtttcgagggcc-tcagtggtgagtatttttggttt-tttgtagaagtttgta 45872794  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    |||||||  || | ||||||||||||||||||||||||||||  ||| |||| |||| ||||||| |||||||||||| || ||||  ||||||| ||||    
T  45872793 tttgatatgtgagtgtttgtttgggtgttccgcatatatacggaacactttttctttgtatgttgttttttaagtctcatagcctagtattccttgtgct 45872694  T
Q  233 tgctaagatt-tttgtgttttaaataaatttcattttagcttttt 276  Q
    ||||| |||| | ||||||||||||||||||||||||| ||||||    
T  45872693 tgctaggattatatgtgttttaaataaatttcattttaacttttt 45872649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 44 - 269
Target Start/End: Original strand, 42677988 - 42678211
Alignment:
Q  44 gagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgatacatg 143  Q
    |||||||||| |||| ||| |||||| |||||||| | |||||||| | |  |||| | ||||||||| |||||||||||||||||||||||||| ||||    
T  42677988 gagatgacttcttggtttgatgtttaatttttattggcttcgagggtcatcagtggtgtgtgtttttggtttgtttgtagaagtttgtatttgatgcatg 42678087  T
Q  144 ggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagattt 243  Q
      | |||||||||||||||| ||||||||||| ||| ||||||||| |||||| |||||||||||||||| |||| |||| ||  ||||||||| || ||    
T  42678088 atg-tttgtttgggtgttccacatatatacgagacacttttcctttttatgttactttttaagtctcctagcctagcatttctcgtgcttgctagga-tt 42678185  T
Q  244 ttgtgttttaaataaatttcatttta 269  Q
     | ||||||||| ||||| |||||||    
T  42678186 ctctgttttaaacaaattccatttta 42678211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 44496600 - 44496494
Alignment:
Q  105 gtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgcttttta 204  Q
    |||||||||||||||||| |||||||||||||||| ||||| || |||||| |||||||||   ||||||||||| |||| |||| ||||||||| ||||    
T  44496600 gtttttgatttgtttgtaaaagtttgtatttgatatatgggtgtctgtttgagtgttccgc--gtatacgacacactttttctttgtatgttgctattta 44496503  T
Q  205 agtctccta 213  Q
    |||||||||    
T  44496502 agtctccta 44496494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 99 - 269
Target Start/End: Complemental strand, 52635314 - 52635142
Alignment:
Q  99 gagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgc 198  Q
    ||||||||||||| ||||||| ||||||||| ||||||||  ||||  |||||||||||||||||||||||| |||||||| |||| |||| ||||||      
T  52635314 gagggtgtttttggtttgtttctagaagtttatatttgatgtatggttgtttgtttgggtgttccgcatatacacgacacactttttctttgtatgttat 52635215  T
Q  199 t-ttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    |  ||||||  | |||  ||| ||||||||||||| |||| | || |||| ||||| ||||||||||||||||    
T  52635214 tactttaagatttctagtctagcattccttatgctcgctagggttctttgcgttttgaataaatttcatttta 52635142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 270
Target Start/End: Complemental strand, 55728316 - 55728145
Alignment:
Q  102 ggtgtttttgatttgtttgtagaagtttgtatttgatacatgggg-gtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgct- 199  Q
    |||||||||  ||||||||||||||||| ||||||||  |||||  ||||||||||| |||||||||||| |||| |||  |||||||| |||||||||     
T  55728316 ggtgtttttagtttgtttgtagaagtttatatttgatgtatgggttgtttgtttgggcgttccgcatatacacgatacacctttcctttgtatgttgcta 55728217  T
Q  200 ttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcattttag 270  Q
     |||||   |||||| ||| |||||||  | || |||| |||| |||| ||||| |||||||||||||||||    
T  55728216 ctttaatattcctaatctagcattcctcgtcctcgctaggattctttgcgttttgaataaatttcattttag 55728145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 19676057 - 19676229
Alignment:
Q  61 tggtgtttagtttttatttgtttcgagggcccttggtggagggtgttttt-gatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtg 159  Q
    |||| |||||||||||||  ||||  ||| |||| ||||||| ||||||| | ||||||| || ||||||| |||||||  ||| | ||||||||| |||    
T  19676057 tggtttttagtttttattgatttctgggggccttagtggaggttgttttttggtttgtttttacaagtttgcatttgatgtatgagtgtttgtttgagtg 19676156  T
Q  160 ttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgct 232  Q
    |||||  ||||| || |||| ||||  ||| ||||||||| ||||||| |  || ||||||||||||| ||||    
T  19676157 ttccgtgtatattcggcacactttttttttgtatgttgctatttaagtattttagcctaacattccttgtgct 19676229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 7971686 - 7971761
Alignment:
Q  60 ttggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtattt 135  Q
    ||||||||||||||||||| ||||||  | | ||| ||||| |||||||||| |||||||||||| ||||||||||    
T  7971686 ttggtgtttagtttttattggtttcggagactcttagtggatggtgtttttggtttgtttgtagacgtttgtattt 7971761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 55728409 - 55728319
Alignment:
Q  40 tttggagatgactttttggatt-ggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttg 130  Q
    |||||||||||||| |||| || ||||||||||||||||| ||||| |||| |||  || ||||||||||||  ||| ||||| ||||||||    
T  55728409 tttggagatgacttcttggttttggtgtttagtttttattggtttc-aggggcctcagtagagggtgttttttgtttatttgttgaagtttg 55728319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 45 - 273
Target Start/End: Original strand, 15050426 - 15050655
Alignment:
Q  45 agatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgg 144  Q
    |||||| || |||| |||||||||||| | |||| ||||||||| ||||  ||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  15050426 agatgatttcttggtttggtgtttagtctctattggtttcgaggaccctccgtgaagggtgtttttggtttgtttgtagaagtttgtatttgatacatgg 15050525  T
Q  145 gggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagatt-t 243  Q
    | ||||||||| |||||||||||||||||| |||| ||||||| | ||||||| ||||||| ||||||| |||| |||||||| |||||||||  ||| |    
T  15050526 gtgtttgtttgtgtgttccgcatatatacggcacacttttcctgtgtatgttgttttttaattctcctagcctagcattccttgtgcttgctagaattct 15050625  T
Q  244 ttgtgttttaaataaatttcattttagctt 273  Q
    |||  | |||||||||||||||||||||||    
T  15050626 ttgcatgttaaataaatttcattttagctt 15050655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 40 - 273
Target Start/End: Complemental strand, 10181823 - 10181590
Alignment:
Q  40 tttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgata 139  Q
    |||||||||||||| |||| |||  |||||||||||||| |||| ||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||    
T  10181823 tttggagatgacttcttggtttgaagtttagtttttattggttttgagggccctcggtggagggtgtttttggtttgcttgtagaagtttgtttttgata 10181724  T
Q  140 catgggggtttg-tttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaa 238  Q
    |||  | ||||| ||||| |||||||||||||||| | ||| || |||||| |||||||| ||||||||||| || | ||||||| ||||| |||| ||     
T  10181723 catatgtgtttgttttggatgttccgcatatatac-agacacttctcctttgtatgttgc-ttttaagtctcttagcttaacatttcttatacttgttag 10181626  T
Q  239 gatt-tttgtgttttaaataaatttcattttagctt 273  Q
    |||| |||||||||| ||||||||||||||||||||    
T  10181625 gattctttgtgttttcaataaatttcattttagctt 10181590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 33 - 187
Target Start/End: Original strand, 39580428 - 39580582
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| |||||||||||||| |||| || ||||||||||| |||| |||| |||||||||| ||||||| | |||||| |||||| |||||||||||||    
T  39580428 tttggtttttggagatgacttcttggtttagtgtttagtttatattggttttgagggcccttcgtggaggctatttttggtttgttagtagaagtttgta 39580527  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcct 187  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||    
T  39580528 tttgatacatgagtgtttgtttgtgtgttccgcatatatacgacacacttttcct 39580582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 5515047 - 5514810
Alignment:
Q  33 tttggtctttggagatgactttttggattgg-tgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgt 131  Q
    |||||| ||||||||||||||||||| |  | |||||| |||||||| |||| | |||||||  |||||||||||||||| ||| |||||||||||||||    
T  5515047 tttggtttttggagatgactttttggttacgatgtttaatttttattggtttggggggccctcagtggagggtgtttttggtttatttgtagaagtttgt 5514948  T
Q  132 atttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgc 231  Q
     |||||  |||||   |||||||||||||||||||||||||||||||| | || |||| |||||| ||  ||||||||||||    | ||||| || |||    
T  5514947 -tttgacgcatggatctttgtttgggtgttccgcatatatacgacacactctttctttgtatgttcctacttaagtctcctagttaagcattctttgtgc 5514849  T
Q  232 ttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    ||||| ||||| |||| ||||| |||||| |||||||||    
T  5514848 ttgcttagattctttgcgttttgaataaacttcatttta 5514810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 38499043 - 38498873
Alignment:
Q  97 tggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgtt 196  Q
    ||||||||||||||| |||  |  || |||||| |||| |||||||||| |||||||||||||||||||||||    |||||  ||||||||| ||||||    
T  38499043 tggagggtgtttttggtttactcataaaagtttatattcgatacatgggtgtttgtttgggtgttccgcatatgcg-gacac--ttttcctttgtatgtt 38498947  T
Q  197 gctttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    ||| |||||||||  |  | ||||||||| | ||||||||| |||| |||||||||||||||||||||||||||    
T  38498946 gctctttaagtcttatggcttaacattccctgtgcttgctaggattctttgtgttttaaataaatttcatttta 38498873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 66 - 273
Target Start/End: Complemental strand, 25142736 - 25142527
Alignment:
Q  66 tttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgt----agaagtttgtatttgatacatgggggtttgtttgggtgtt 161  Q
    ||||||||||||| ||||| |||||| |  ||||||| |||||||  |||||||||    | ||||||| |||| ||  ||| | ||||||||| |||||    
T  25142736 tttagtttttattggtttcaagggcc-tcagtggaggttgttttt--tttgtttgttcttataagtttgcatttaatgtatgagtgtttgtttgagtgtt 25142640  T
Q  162 ccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaat 260  Q
    |||   |||||||||||| ||||||||| | ||||| | ||||||| || ||  ||| ||||||||||||| | ||||||| ||| |||||| |||||||    
T  25142639 ccgtggatatacgacacacttttcctttgtttgttgttatttaagtatcttagtctagcattccttatgctagataagattctttatgttttgaataaat 25142540  T
Q  261 ttcattttagctt 273  Q
    |||||||||||||    
T  25142539 ttcattttagctt 25142527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 3763380 - 3763503
Alignment:
Q  40 tttggagatgactttttggattgg-tgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgat 138  Q
    ||||||||||||||||||| |  | ||||||||||||||| |||| | |||| ||  |||||||||||||||| ||| | |||||||||||| |||||||    
T  3763380 tttggagatgactttttggttaagatgtttagtttttattggtttgg-gggctctctgtggagggtgtttttggtttatatgtagaagtttgaatttgat 3763478  T
Q  139 acatgggggtttgtttgggtgttcc 163  Q
    | ||  | |||||||||||||||||    
T  3763479 atataagtgtttgtttgggtgttcc 3763503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 33 - 270
Target Start/End: Complemental strand, 2912 - 2671
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgttt---gtagaagttt 129  Q
    |||||| ||||||||||| |||||||  ||||||||| |||||||| ||||||||||| ||| || ||||||||||||  ||| |||   ||||||||||    
T  2912 tttggtttttggagatgaatttttggtatggtgtttaatttttattagtttcgagggctcttagtagagggtgttttttgttttttttttgtagaagttt 2813  T
Q  130 gtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttat 229  Q
    |||||||||||| |||  ||||||||| ||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||||  ||| |||||||| |    
T  2812 gtatttgatacaagggtctttgtttggatgttccgcatatatacggcacacttttcctttgtatgttgcttgttaagtctcctagtctagcattccttgt 2713  T
Q  230 gcttgctaagatt-tttgtgttttaaataaatttcattttag 270  Q
    |||||||| |||| |||| ||||| ||||| |||||||||||    
T  2712 gcttgctaggattctttgcgttttgaataagtttcattttag 2671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 40 - 269
Target Start/End: Original strand, 2796 - 3023
Alignment:
Q  40 tttggagatgactttttggat-tggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgat 138  Q
    ||||||||||| ||||||| | | ||||||||||||||||  ||| | ||| |||| |||||||||||||| | ||||||||||||||||||||||||||    
T  2796 tttggagatgaatttttggttatagtgtttagtttttattgatttgggggggccttagtggagggtgttttaggtttgtttgtagaagtttgtatttgat 2895  T
Q  139 acatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaa 238  Q
     |||| |    |||||||||||||| ||||||||||||||| ||||| |||||||||| ||  |||||||||||| || |||||||||| |||||||||     
T  2896 gcatgag----tgtttgggtgttccacatatatacgacacacttttcttttatatgttcctacttaagtctcctagccaaacattccttgtgcttgctag 2991  T
Q  239 gatt-tttgtgttttaaataaatttcatttta 269  Q
    |||| ||||| |||||||||||  ||||||||    
T  2992 gattctttgtcttttaaataaacctcatttta 3023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 33 - 269
Target Start/End: Original strand, 31026659 - 31026885
Alignment:
Q  33 tttggtctttggagatgactttttggattggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgta 132  Q
    |||||| |||||||| ||||| |||| |||||  |||||||||||| |||| |||||||||  |||||||||||||||| ||||||||||| ||||||||    
T  31026659 tttggtttttggagacgacttattggtttggttattagtttttattggttttgagggccctcagtggagggtgtttttggtttgtttgtaggagtttgta 31026758  T
Q  133 tttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttata--tgttgctttttaagtctcctaacctaacattccttatg 230  Q
    |||| ||||||||            ||||| ||||||||||| |||| ||||||||| ||  ||||||||||||||||| ||| ||||||||| ||||||    
T  31026759 tttg-tacatggg------------tgttctgcatatatacggcacacttttcctttgtaaatgttgctttttaagtcttctagcctaacatttcttatg 31026845  T
Q  231 cttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    ||||||| |||| || ||||||||||||||||||||||||    
T  31026846 cttgctaggattcttagtgttttaaataaatttcatttta 31026885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 11366565 - 11366395
Alignment:
Q  97 tggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgtt 196  Q
    |||||||||||||||||||| | ||| |||||| | ||||||||||| | ||||||||||||||||||||||||||||  ||| ||||||||| ||||||    
T  11366565 tggagggtgtttttgatttgctcgtaaaagtttatgtttgatacatgagtgtttgtttgggtgttccgcatatatacg-gacacttttcctttgtatgtt 11366467  T
Q  197 gctttttaagtctcctaacctaacattccttatgcttgctaagatttttgtgttttaaataaatttcatttta 269  Q
    ||| |||||||||  ||   || ||||||||||||||||||| | || |||||||||||||||||||||||||    
T  11366466 gctctttaagtcttttaggttagcattccttatgcttgctaa-aattctgtgttttaaataaatttcatttta 11366395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 40 - 269
Target Start/End: Complemental strand, 10772614 - 10772391
Alignment:
Q  40 tttggagatgactttttggat-tggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgat 138  Q
    ||||||||||||||||||| | |||||||||||||||||| |||| |||| ||||  |||||||||||||||| ||| |||||||||||||||||||| |    
T  10772614 tttggagatgactttttggttctggtgtttagtttttattggttttgagg-ccctcagtggagggtgtttttggtttatttgtagaagtttgtatttgct 10772516  T
Q  139 acatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaa 238  Q
     |||| | |||||  || |||||||||||||||||| |||| ||||||||| || ||| ||     ||||||||| || | |||||||| ||||||| |     
T  10772515 gcatgagtgtttg--tgtgtgttccgcatatatacggcacacttttcctttgtacgttcct-----agtctcctagccaagcattccttgtgcttgcaag 10772423  T
Q  239 gat-ttttgtgttttaaataaatttcatttta 269  Q
    ||| ||||| ||||| ||| || |||||||||    
T  10772422 gatattttgcgttttgaattaacttcatttta 10772391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 24842913 - 24842817
Alignment:
Q  34 ttggtctttggagatgactttttggatt-ggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttg 130  Q
    ||||| ||||||| ||||||||||| || ||||||||||||||||| |||||| |||||||| || ||||||||||||| ||||||||||||||||||    
T  24842913 ttggtttttggagctgactttttggttttggtgtttagtttttattggtttcg-gggcccttagtagagggtgtttttggtttgtttgtagaagtttg 24842817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 10670483 - 10670604
Alignment:
Q  141 atgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaaga 240  Q
    ||||| |||||||||| ||||| |||||||||||||| | ||||||||| ||||||| ||||||||||||||||| || |||| ||| |||||  | |||    
T  10670483 atgggtgtttgtttggatgttctgcatatatacgacaaacttttcctttgtatgttgttttttaagtctcctaacttagcattacttgtgctt-attaga 10670581  T
Q  241 tttttgtgttttaaataaatttc 263  Q
     || || ||||||||||||||||    
T  10670582 attctgggttttaaataaatttc 10670604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 158 - 273
Target Start/End: Complemental strand, 78525 - 78409
Alignment:
Q  158 tgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaat 256  Q
    ||||||||||||||||| | || ||||||||| |||||| || ||||||||||||| || | |||| ||| ||||||||| |||| |||| ||||| |||    
T  78525 tgttccgcatatatacggctcacttttcctttgtatgttcctatttaagtctcctagccaagcatttcttgtgcttgctaggattctttgcgttttgaat 78426  T
Q  257 aaatttcattttagctt 273  Q
    ||| |||||||||||||    
T  78425 aaacttcattttagctt 78409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 9566642 - 9566477
Alignment:
Q  97 tggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgtt 196  Q
    ||||||||||||||| |||  ||||| |||||| ||||||||| ||| | ||||||||| || |||||||||||||||  ||| |||||||||  ||| |    
T  9566642 tggagggtgtttttggtttacttgtaaaagtttatatttgatagatgagtgtttgtttgagtattccgcatatatacg-gacacttttcctttgcatggt 9566544  T
Q  197 gctttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    |||||| |  ||||        ||||||||| ||||||||| |||| |||||||||||||||||||||||||||    
T  9566543 gcttttaagttctc-------tacattccttgtgcttgctaggattctttgtgttttaaataaatttcatttta 9566477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 30845030 - 30844920
Alignment:
Q  158 tgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaat 256  Q
    |||||| ||||||||||| | ||||||||||||||||||||| ||||| ||| |||   || |||||||| |||||| ||||||| ||||  |||| |||    
T  30845030 tgttccacatatatacgatatatttttcctttatatgttgctatttaaatcttctattgtagcattccttgtgcttgttaagattctttgcattttgaat 30844931  T
Q  257 aaatttcattt 267  Q
    |||||||||||    
T  30844930 aaatttcattt 30844920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 24350678 - 24350768
Alignment:
Q  99 gagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttccttt 189  Q
    ||||||||||| | ||||||||||||| ||| ||||||||  || |   ||||||||||||||||||||||| ||| |||| |||||||||    
T  24350678 gagggtgttttcggtttgtttgtagaaatttatatttgatgtatagttatttgtttgggtgttccgcatatacacggcacacttttccttt 24350768  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 32747997 - 32748153
Alignment:
Q  114 ttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctccta 213  Q
    |||||| || ||||||| |||||||  | ||| ||||||||| ||||||||  |||| ||| |||| | ||||||| ||||||||| ||||||| || ||    
T  32747997 ttgtttttataagtttgcatttgatgtacgggtgtttgtttgagtgttccgtgtatacacggcacactattcctttgtatgttgctatttaagtatctta 32748096  T
Q  214 acctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
     |||| |||||||| |||| | || |||| |||   |||| ||||||||||||||||    
T  32748097 gcctagcattccttgtgctagatatgattctttacattttgaataaatttcatttta 32748153  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 24350591 - 24350671
Alignment:
Q  40 tttggagatgactttttggatt-ggtgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttg 120  Q
    |||||||||||||| |||| || ||||||||||||| ||| ||||| |||||| |  || ||||||||||||||||||||||    
T  24350591 tttggagatgacttcttggttttggtgtttagttttgattggtttcaagggcc-tcagtagagggtgtttttgatttgtttg 24350671  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 24842774 - 24842714
Alignment:
Q  154 tgggtgttccgcatatatacgacacatttttcctttatatgttgct-ttttaagtctccta 213  Q
    ||||||||||| |||||||||||||| || |||||| ||||||||| ||||||| ||||||    
T  24842774 tgggtgttccgtatatatacgacacacttctcctttgtatgttgctattttaagactccta 24842714  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 30845149 - 30845097
Alignment:
Q  33 tttggtctttggagatgactttttggatt-ggtgtttagtttttatttgtttc 84  Q
    |||||| |||| |||||||||||||| || ||||||||||||||||| |||||    
T  30845149 tttggtttttgaagatgactttttggttttggtgtttagtttttattggtttc 30845097  T

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Target: scaffold0027 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 276
Target Start/End: Complemental strand, 2652 - 2420
Alignment:
Q  43 ggagatgactttttggattgg-tgtttagtttttatttgtttcgagggcccttggtggagggtgtttttgatttgtttgtagaagtttgtatttgataca 141  Q
    |||||||||||| ||| || | ||||||| |||||||  |||||| ||||||   ||||||||||||||| ||||||||||||  ||||||||||||  |    
T  2652 ggagatgactttgtggttttgatgtttagattttattgatttcgaaggccctcaatggagggtgtttttggtttgtttgtagacatttgtatttgatgta 2553  T
Q  142 tgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgttgctttttaagtctcctaacctaacattccttatgcttgctaagat 241  Q
         ||||||||| |||| |||||||||||   |||  ||||||||| ||||||||| ||||||||||||||| ||  |||  |  |||| ||||||||    
T  2552 caaatgtttgtttgagtgtcccgcatatatagcgcac--ttttcctttgtatgttgctatttaagtctcctaacttagtatttttcttgctagctaagat 2455  T
Q  242 ttttgtgttttaaataaatttcattttagcttttt 276  Q
    ||||| ||||| |||| ||||||||||| ||||||    
T  2454 ttttgcgttttgaatacatttcattttaacttttt 2420  T

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Target: scaffold0005 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 269762 - 269597
Alignment:
Q  97 tggagggtgtttttgatttgtttgtagaagtttgtatttgatacatgggggtttgtttgggtgttccgcatatatacgacacatttttcctttatatgtt 196  Q
    |||||||| |||||| |||| | ||| |||||| ||||||||||||||| |||||||| |||||||||||||| ||||  ||| ||||||        ||    
T  269762 tggagggtatttttggtttgctcgtaaaagtttatatttgatacatgggtgtttgtttaggtgttccgcatatgtacg-gacacttttcc--------tt 269672  T
Q  197 gct-ttttaagtctcctaacctaacattccttatgcttgctaagatt-tttgtgttttaaataaatttcatttta 269  Q
    ||| |||||||||| ||| | || |||| |||||||||||||| ||| | || ||||||||||||||||||||||    
T  269671 gctcttttaagtcttctagcttagcatttcttatgcttgctaaaattctctgagttttaaataaatttcatttta 269597  T

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