View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20287_low_8 (Length: 490)
Name: NF20287_low_8
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 26471341 - 26471813
Alignment:
| Q |
1 |
ggtcaaaatcaaaattcaacaacaataacacaacaacctcagaatttgcaaatcttgtttctcttcagttaccttcaactgacactattgaaccatctat |
100 |
Q |
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| T |
26471341 |
ggtcaaaatcaaaattcaacaacaataacacaacaacctcagaatttgcaaatcttgtttctcttcagttaccttcaactgacactattgaaccatctat |
26471440 |
T |
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| Q |
101 |
agaaccttaccttaaaccaatcaaccttgttgagactttagcagaactctatcaaaggatagagttttgctccacacagaatgagaaagtgacacttttt |
200 |
Q |
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| T |
26471441 |
agaaccttaccttaaaccaatcaaccttgttgagactttagcagaactctatcaaaggatagagttttgctccacacagaatgagaaagtgacacttttt |
26471540 |
T |
|
| Q |
201 |
gttgaacttttctctgttttgtatggtcttggagaccagaagctactcagaagatgtcttagaaatgcgcgacagaacgccgaagatgtgatgtcaaagg |
300 |
Q |
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| T |
26471541 |
gttgaacttttctctgttttgtatggtcttggagaccagaagctactcagaagatgtcttagaaatgcgcgacagaacgccgaagatgtgatttcaaagg |
26471640 |
T |
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| Q |
301 |
ttgttctttctgcatggttgaggtttgaaagaagggatgatgaacttgttggtgtttgttcaatggattgtggtggttataatgttcttgaatgtccaaa |
400 |
Q |
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| T |
26471641 |
ttgttctttctgcatggttgaggtttgaaagaagggatgatgaacttgttggtgtttgttcaatggattgtggtggttataatgttcttgaatgtccaaa |
26471740 |
T |
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| Q |
401 |
gaagaatttggaaaatgggtttagtcctttttcaattaatgatcactgcaagtgtactcaagaagagaaaaag |
473 |
Q |
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| T |
26471741 |
gaagaatttggaaaatgggtttagtcctttttcaattaatgatcactgcaagtgtactcaagaagagaaaaag |
26471813 |
T |
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