View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20287_low_9 (Length: 462)
Name: NF20287_low_9
Description: NF20287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20287_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 446
Target Start/End: Complemental strand, 39300997 - 39300562
Alignment:
| Q |
11 |
caaaggcaaaacaaaattatgtatggattagtccacacaaaatnnnnnnnntcattgacactctaaagattcaaacttgagatttgaatgaatgacagtc |
110 |
Q |
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| T |
39300997 |
caaaggcaaaacaaaattatgtatggattagtccacacaaaataaaaaaaatcagggacactctaaagattcaaacttgagatttgaatgaatcacactc |
39300898 |
T |
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| Q |
111 |
taaatataattgttcaaaaataacccacaacaaaaggaagatcgaattgaatattcttgaatcaccaataaactgttaaatcatttattgagaccaggtg |
210 |
Q |
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| T |
39300897 |
taaatataattgttcaaaaataagccacaacaaaacgaagatcgaattgaatattcttgaatcaccaataaactgttaaatcatttattgagaccaggtg |
39300798 |
T |
|
| Q |
211 |
tcttccattgatctgcagtgtacctctttctaccaagcacaaactcatacgaggcactccttcaatcttccacgtgtctttaaacacgaaaaaccagcct |
310 |
Q |
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| T |
39300797 |
tcttccattgatctgcagtgtacctctttctaccaagcacaaactcatacgaggcaatccttcaatcttccacgtgtctttaaacacgaaaaaccagcct |
39300698 |
T |
|
| Q |
311 |
cgtctcatccaatcatcctaatccatctatattttaattttcattattataagctgagtcacaatatccaatttcacaacattcacacgtgtcattaatc |
410 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
39300697 |
cgtttcatccaatcatcctaatccatctatattttaattttcattattataagctgagtcacaatatccaatttcacaccattcacacgtgttattaatc |
39300598 |
T |
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| Q |
411 |
actgtttcttattccacatgtcatactccatgcaaa |
446 |
Q |
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| T |
39300597 |
actgtttcttattccacatgtcatactccatgcaaa |
39300562 |
T |
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