View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20288_high_10 (Length: 334)

Name: NF20288_high_10
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20288_high_10
NF20288_high_10
[»] chr5 (13 HSPs)
chr5 (228-295)||(12050365-12050432)
chr5 (136-203)||(35638786-35638853)
chr5 (140-203)||(2890988-2891051)
chr5 (136-203)||(15498667-15498734)
chr5 (136-203)||(29525331-29525398)
chr5 (136-203)||(37530755-37530822)
chr5 (136-203)||(42709333-42709400)
chr5 (136-203)||(6789624-6789691)
chr5 (156-203)||(10815085-10815132)
chr5 (136-203)||(12280803-12280870)
chr5 (136-203)||(12953842-12953909)
chr5 (157-203)||(42422829-42422875)
chr5 (114-203)||(17645328-17645417)
[»] chr1 (11 HSPs)
chr1 (136-203)||(28343711-28343778)
chr1 (137-203)||(45900191-45900257)
chr1 (139-202)||(36739576-36739639)
chr1 (136-203)||(28314864-28314931)
chr1 (136-203)||(30358096-30358163)
chr1 (136-203)||(39325633-39325700)
chr1 (137-203)||(47326595-47326661)
chr1 (114-203)||(46315676-46315765)
chr1 (136-203)||(38815559-38815626)
chr1 (157-203)||(11823606-11823652)
chr1 (136-198)||(38624095-38624157)
[»] chr8 (9 HSPs)
chr8 (137-203)||(17121837-17121903)
chr8 (136-203)||(14911787-14911854)
chr8 (136-203)||(43800779-43800846)
chr8 (136-202)||(284841-284907)
chr8 (136-202)||(630970-631036)
chr8 (136-202)||(816782-816848)
chr8 (114-198)||(20697494-20697578)
chr8 (136-198)||(5574629-5574691)
chr8 (170-202)||(42353734-42353766)
[»] chr6 (5 HSPs)
chr6 (136-203)||(20645680-20645747)
chr6 (136-203)||(20992275-20992342)
chr6 (136-203)||(21778096-21778163)
chr6 (136-203)||(24119249-24119316)
chr6 (136-203)||(13756330-13756397)
[»] chr4 (11 HSPs)
chr4 (136-203)||(44525948-44526015)
chr4 (136-203)||(2943662-2943729)
chr4 (136-203)||(19801873-19801940)
chr4 (144-203)||(49335209-49335268)
chr4 (136-203)||(53284029-53284096)
chr4 (136-203)||(6238210-6238277)
chr4 (136-203)||(28778578-28778645)
chr4 (114-198)||(44448474-44448558)
chr4 (136-198)||(47633854-47633916)
chr4 (137-198)||(37498230-37498291)
chr4 (138-203)||(55001756-55001821)
[»] chr3 (14 HSPs)
chr3 (136-203)||(30317954-30318021)
chr3 (136-203)||(42292999-42293066)
chr3 (136-202)||(30743024-30743090)
chr3 (136-203)||(8321441-8321508)
chr3 (136-203)||(8879386-8879453)
chr3 (136-203)||(34435985-34436052)
chr3 (136-203)||(41991694-41991761)
chr3 (136-203)||(51062932-51062999)
chr3 (136-203)||(52959314-52959381)
chr3 (136-198)||(54463466-54463528)
chr3 (154-203)||(36237858-36237907)
chr3 (138-203)||(48051016-48051081)
chr3 (114-203)||(1361693-1361782)
chr3 (136-203)||(19274752-19274819)
[»] chr2 (5 HSPs)
chr2 (136-203)||(1876043-1876110)
chr2 (136-203)||(12160924-12160991)
chr2 (136-198)||(7454559-7454621)
chr2 (136-203)||(36936083-36936150)
chr2 (137-203)||(39241172-39241238)
[»] chr7 (14 HSPs)
chr7 (136-203)||(27826731-27826798)
chr7 (136-203)||(28494286-28494353)
chr7 (136-203)||(43156590-43156657)
chr7 (136-230)||(46672501-46672595)
chr7 (114-203)||(28958110-28958199)
chr7 (114-199)||(46615667-46615752)
chr7 (136-203)||(4060374-4060441)
chr7 (136-203)||(28235307-28235374)
chr7 (136-203)||(31031904-31031971)
chr7 (136-199)||(42997540-42997603)
chr7 (136-198)||(981364-981426)
chr7 (157-203)||(6243889-6243935)
chr7 (137-203)||(42265284-42265350)
chr7 (137-197)||(44103692-44103752)
[»] scaffold0060 (1 HSPs)
scaffold0060 (136-203)||(57859-57926)


Alignment Details
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 12050365 - 12050432
Alignment:
Q  228 ctagatgtaaaaacagcgagcttcttatccgtaactaccttacatgcgtccttaatttgtccttgtat 295  Q
    |||||||| |||||||| |||||||||||| | || |||||||||| |||||||||||||||||||||    
T  12050365 ctagatgtgaaaacagcaagcttcttatccattaccaccttacatgtgtccttaatttgtccttgtat 12050432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 35638853 - 35638786
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||||||||||||   |||||||| |||||||| ||||||||||||||||||||||||||| ||||    
T  35638853 cttgttatcaaacacgccacattttcatctaacgagcttataagttaatccaacaaactataagctag 35638786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 2890988 - 2891051
Alignment:
Q  140 ttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||||||||| |||||||| || ||| | ||||||||||| ||||||||||||||| ||||    
T  2890988 ttatcaaacacatcacattttcatccaacaagcttataagttagtccaacaaactataagctag 2891051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 15498734 - 15498667
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  15498734 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 15498667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 29525331 - 29525398
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  29525331 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 29525398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 37530755 - 37530822
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  37530755 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 37530822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 42709400 - 42709333
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  42709400 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 42709333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 6789624 - 6789691
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || ||||| |||||||| |||||||| ||||||||||| |||||| ||||    
T  6789624 cttgttaccaaacacgtcacgttttcatctaacgagcttataagctaatccaacaagctataagctag 6789691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 10815132 - 10815085
Alignment:
Q  156 attttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||| |||||||| |||||||| |||||||||||||||||| ||||    
T  10815132 attttcatctaacgagcttataagctaatccaacaaactataagctag 10815085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 12280870 - 12280803
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| |||||||   || ||||| |||||||| |||||||| |||||||||||||||||| ||||    
T  12280870 cttgttaccaaacacgccacgttttcatctaacgagcttataagctaatccaacaaactataagctag 12280803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 12953842 - 12953909
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||||||||||||   || ||||| |||||||| |||||||| |||||||||||| ||||| ||||    
T  12953842 cttgttatcaaacacgccacgttttcatctaacgagcttataagctaatccaacaaattataagctag 12953909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 42422875 - 42422829
Alignment:
Q  157 ttttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||| |||||||| ||||||||||||| |||||| |||||||||||    
T  42422875 ttttcatctaacgagcttataagttaattcaacaagctataaactag 42422829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 17645417 - 17645328
Alignment:
Q  114 cgttataagctcatgnnnnnnncttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||||||||||||       ||||||| ||||||| | || ||||| || |||||||||||||| ||||| ||||| |||||| ||||    
T  17645417 cgttataagctcatgagaaaagcttgttaccaaacacgtcacgttttcatccaacgaacttataagctaatctaacaagctataagctag 17645328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 28343778 - 28343711
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||||| || ||||| || ||||||||||||||||| ||||||||||||||||||||    
T  28343778 cttgttaccaaacacatcacgttttcatccaacgaacttataagttactccaacaaactataaactag 28343711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 45900257 - 45900191
Alignment:
Q  137 ttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||| ||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||||    
T  45900257 ttgttaccaaacacatcacgttttcttctaacgagcttataagctaatccaacaagctataaactag 45900191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 36739639 - 36739576
Alignment:
Q  139 gttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaacta 202  Q
    |||| ||||||| | || ||||| |||||||| |||||||||||||||||||||||||||||||    
T  36739639 gttaccaaacacgtcacgttttcatctaacgagcttataagttaatccaacaaactataaacta 36739576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 28314864 - 28314931
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||||| || ||||  ||||| || ||||||||||||||||||||| ||||||||||    
T  28314864 cttgttaccaaacacatcacgtttttatctaatgagcttataagttaatccaacaaattataaactag 28314931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 30358163 - 30358096
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  30358163 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 30358096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 39325700 - 39325633
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  39325700 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 39325633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 47326595 - 47326661
Alignment:
Q  137 ttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||| ||||||||  || ||||| |||||||| |||||||| |||||||||||||||||| ||||    
T  47326595 ttgttaccaaacacaccacgttttcatctaacgagcttataagctaatccaacaaactataagctag 47326661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 46315676 - 46315765
Alignment:
Q  114 cgttataagctcatgnnnnnnncttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||||||||||||       ||||||| ||||||| | || ||||| |||||||| |||||||| ||||||||||| |||||| ||||    
T  46315676 cgttataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcatctaacgagcttataagctaatccaacaagctataagctag 46315765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 38815559 - 38815626
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| |||||||   |||||||| |||||||| |||||||| ||||||||||| |||||| ||||    
T  38815559 cttgttaccaaacacgccacattttcatctaacgagcttataagctaatccaacaagctataagctag 38815626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 11823652 - 11823606
Alignment:
Q  157 ttttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||| |||||||| |||||||| ||||||||||| |||||||||||    
T  11823652 ttttcatctaacgagcttataagctaatccaacaagctataaactag 11823606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 38624157 - 38624095
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataa 198  Q
    ||||||| |||||||   || ||||| |||||||| |||||||| ||||||||||||||||||    
T  38624157 cttgttaccaaacacgccacgttttcatctaacgagcttataagctaatccaacaaactataa 38624095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 17121903 - 17121837
Alignment:
Q  137 ttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||| |||||||||||    
T  17121903 ttgttaccaaacacgctacgttttcatctaacgaacttataagttaatccaacaacctataaactag 17121837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 14911854 - 14911787
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| |||||||   |||||||| |||||||| |||||||| |||||||||||||||||| ||||    
T  14911854 cttgttaccaaacacgccacattttcatctaacgagcttataagctaatccaacaaactataagctag 14911787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 43800779 - 43800846
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  43800779 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 43800846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 284907 - 284841
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaacta 202  Q
    ||||||| |||||||   || ||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  284907 cttgttaccaaacacgccacgttttcatctaacgaacttataagctaatccaacaagctataaacta 284841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 630970 - 631036
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaacta 202  Q
    ||||||| |||||||   || ||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  630970 cttgttaccaaacacgccacgttttcatctaacgaacttataagctaatccaacaagctataaacta 631036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 816782 - 816848
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaacta 202  Q
    ||||||| |||||||   || ||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  816782 cttgttaccaaacacgccacgttttcatctaacgaacttataagctaatccaacaagctataaacta 816848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 20697494 - 20697578
Alignment:
Q  114 cgttataagctcatgnnnnnnncttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataa 198  Q
    |||||||||||||||       ||||||| ||||||| |||  ||||| |||||||| |||||||| ||||||||||| ||||||    
T  20697494 cgttataagctcatgaaaaaagcttgttaccaaacacgttatgttttcatctaacgagcttataagctaatccaacaagctataa 20697578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 5574691 - 5574629
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataa 198  Q
    ||||||| |||||||   || ||||| |||||||| ||||||||||||| |||||||||||||    
T  5574691 cttgttaccaaacacgccacgttttcatctaacgagcttataagttaattcaacaaactataa 5574629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 42353734 - 42353766
Alignment:
Q  170 aacttataagttaatccaacaaactataaacta 202  Q
    |||||||||| ||||||||||||||||||||||    
T  42353734 aacttataagctaatccaacaaactataaacta 42353766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 20645747 - 20645680
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | |||||||| |||||||| |||||||| |||||||||||||||||| ||||    
T  20645747 cttgttaccaaacacgtcacattttcatctaacgagcttataagctaatccaacaaactataagctag 20645680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 20992275 - 20992342
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| |||||||   || ||||| |||||||| |||||||| |||||||||||||||||||||||    
T  20992275 cttgttaccaaacacgccacgttttcatctaacgagcttataagctaatccaacaaactataaactag 20992342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 21778096 - 21778163
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||||  | |||||| |||||||| |||||||||||||||||||  |||||||||||    
T  21778096 cttgttaccaaacacaccagattttcatctaacgagcttataagttaatccaacaggctataaactag 21778163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 24119249 - 24119316
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  24119249 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 24119316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 13756330 - 13756397
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| |||||||   || ||||| |||||||| |||||||| ||||||||||| |||||||||||    
T  13756330 cttgttaccaaacacgccacgttttcatctaacgagcttataagctaatccaacaagctataaactag 13756397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 44525948 - 44526015
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||||| || ||||| | ||||||||||||||| |||||||||||||||||| ||||    
T  44525948 cttgttaccaaacacatcacgttttcatttaacgaacttataagctaatccaacaaactataagctag 44526015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 2943662 - 2943729
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || ||||| |||||||| |||||||| |||||||||||||||||| ||||    
T  2943662 cttgttaccaaacacgtcacgttttcatctaacgagcttataagctaatccaacaaactataagctag 2943729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 19801873 - 19801940
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  19801873 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 19801940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 49335209 - 49335268
Alignment:
Q  144 caaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| | || ||||||||||||||||||||||| ||||||||||| |||||| ||||    
T  49335209 caaacacgtcacgttttcttctaacgaacttataagctaatccaacaagctataagctag 49335268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 53284096 - 53284029
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  53284096 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 53284029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 6238277 - 6238210
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || ||||| |||||||| |||||||| ||||||||||| |||||| ||||    
T  6238277 cttgttaccaaacacgtcacgttttcatctaacgagcttataagctaatccaacaagctataagctag 6238210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 28778645 - 28778578
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || ||||| || || ||||||||||||||||| ||||| |||||||||||    
T  28778645 cttgttaccaaacacgtcacgttttcatccaatgaacttataagttaatctaacaagctataaactag 28778578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 44448558 - 44448474
Alignment:
Q  114 cgttataagctcatgnnnnnnncttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataa 198  Q
    |||||||||||||||       ||||||| |||||||   || ||||| |||||||| |||||||||||||||||||| ||||||    
T  44448558 cgttataagctcatgaaaaaagcttgttaccaaacacgccacgttttcatctaacgagcttataagttaatccaacaagctataa 44448474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 47633854 - 47633916
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataa 198  Q
    ||||||| ||||||| | || ||||| |||||||| |||||||| ||||||||||| ||||||    
T  47633854 cttgttaccaaacacgtcacgttttcatctaacgagcttataagctaatccaacaagctataa 47633916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 37498291 - 37498230
Alignment:
Q  137 ttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataa 198  Q
    |||||| ||||||| | || ||||| || ||||| |||||||| ||||||||||||||||||    
T  37498291 ttgttaccaaacacgtcacgttttcatccaacgagcttataagctaatccaacaaactataa 37498230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 55001756 - 55001821
Alignment:
Q  138 tgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||| ||||||||  || ||||| |||||||| |||||||| ||||||||||| |||||| ||||    
T  55001756 tgttaccaaacacaccacgttttcatctaacgagcttataagctaatccaacaagctataagctag 55001821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 30317954 - 30318021
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||||||||||| | || ||||| |||||||| |||||||| |||||||||||||||||| ||||    
T  30317954 cttgttatcaaacacgtcacgttttcatctaacgagcttataagctaatccaacaaactataagctag 30318021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 42293066 - 42292999
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||||| || ||||| || |||||||||||||| || ||||||||||||||||||||    
T  42293066 cttgttaccaaacacatcacgttttcatccaacgaacttataagctagtccaacaaactataaactag 42292999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 30743024 - 30743090
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaacta 202  Q
    ||||||| ||||||||  |||||||| |||||| | |||||||| ||||||||||||||||||||||    
T  30743024 cttgttaccaaacacaccacattttcatctaaccagcttataagctaatccaacaaactataaacta 30743090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 8321441 - 8321508
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  8321441 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 8321508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 8879453 - 8879386
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| |||| || | || ||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  8879453 cttgttaccaaatacgtcacgttttcatctaacgaacttataagctaatccaacaaactataagctag 8879386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 34435985 - 34436052
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  34435985 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 34436052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 41991694 - 41991761
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  41991694 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 41991761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 51062999 - 51062932
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||||||||||| | || ||||| ||||||||||||||||| |||| |||||| |||||| ||||    
T  51062999 cttgttatcaaacacgtcacgttttcatctaacgaacttataagataattcaacaagctataagctag 51062932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 52959381 - 52959314
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || ||||| || ||||| ||||||||||||||||||||||||||| ||||    
T  52959381 cttgttaccaaacacgtcacgttttcatccaacgagcttataagttaatccaacaaactataagctag 52959314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 54463466 - 54463528
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataa 198  Q
    ||||||| ||||||| | || ||||| |||||||| |||||||| ||||||||||||||||||    
T  54463466 cttgttaccaaacacgtcacgttttcatctaacgagcttataagataatccaacaaactataa 54463528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 36237907 - 36237858
Alignment:
Q  154 acattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||||  |||||||| ||||||||||||||||||||||||||| ||||    
T  36237907 acatttttatctaacgagcttataagttaatccaacaaactataagctag 36237858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 48051081 - 48051016
Alignment:
Q  138 tgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||| ||||||| | || ||||| |||||||| |||||||||||||||||||| |||||| ||||    
T  48051081 tgttaccaaacacgtcacgttttcatctaacgagcttataagttaatccaacaagctataagctag 48051016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 1361782 - 1361693
Alignment:
Q  114 cgttataagctcatgnnnnnnncttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||||||||||||       |||||||||||||||   |||||||  |||||||| |||||||| ||||||||||| |||||| ||||    
T  1361782 cgttataagctcatgaaaaaagcttgttatcaaacacgccacatttttatctaacgagcttataagctaatccaacaagctataagctag 1361693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 19274819 - 19274752
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | |||||||| || ||||| |||||||| ||||||||||| |||||| ||||    
T  19274819 cttgttaccaaacacgtcacattttcatccaacgagcttataagctaatccaacaagctataagctag 19274752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 1876043 - 1876110
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| |||||||||||||||||| ||||    
T  1876043 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaaactataagctag 1876110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 12160924 - 12160991
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  12160924 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 12160991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 7454621 - 7454559
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataa 198  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| ||||||    
T  7454621 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataa 7454559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 36936083 - 36936150
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || ||||| |||||||| |||||||| ||||||||||| |||||| ||||    
T  36936083 cttgttaccaaacacgtcacgttttcatctaacgagcttataagctaatccaacaagctataagctag 36936150  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 39241172 - 39241238
Alignment:
Q  137 ttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||| ||||||| | || ||||| |||||||| |||||||| ||||||||||| |||||| ||||    
T  39241172 ttgttaccaaacacgtcacgttttcatctaacgagcttataagctaatccaacaagctataagctag 39241238  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 27826798 - 27826731
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  27826798 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 27826731  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 28494286 - 28494353
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  28494286 cttgttaccaaacacgtcacgttttcttctaacgagcttataagctaatccaacaagctataagctag 28494353  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 43156657 - 43156590
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||||||||||||   |||||||| |||||||| |||||||| ||||||||||| |||||| ||||    
T  43156657 cttgttatcaaacacgccacattttcatctaacgagcttataagctaatccaacaagctataagctag 43156590  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 46672595 - 46672501
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactagnnnnnnngtgttttcaaacacagccta 230  Q
    ||||||| ||||||| | |||||||| |||||||| |||||||| |||||||||||  ||||| ||||       ||||| ||||||||||||||    
T  46672595 cttgttaccaaacacgtcacattttcatctaacgagcttataagctaatccaacaagttataagctagcttttttgtgttatcaaacacagccta 46672501  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 28958110 - 28958199
Alignment:
Q  114 cgttataagctcatgnnnnnnncttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||||||||||||       ||||||| |||||||   || ||||| |||||||| |||||||||||||||||||| |||||| ||||    
T  28958110 cgttataagctcatgaaaaaagcttgttaccaaacacgccacgttttcatctaacgagcttataagttaatccaacaagctataagctag 28958199  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 46615667 - 46615752
Alignment:
Q  114 cgttataagctcatgnnnnnnncttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaa 199  Q
    |||||||||||||||       ||||||| |||||||  ||| ||||| |||||||| |||||||| ||||| |||||||||||||    
T  46615667 cgttataagctcatgaaaaaagcttgttaccaaacacgctacgttttcatctaacgagcttataagctaatctaacaaactataaa 46615752  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 4060441 - 4060374
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| |||||||   || ||||| |||||||| |||||||| |||||||||||||||||| ||||    
T  4060441 cttgttaccaaacacgccacgttttcatctaacgagcttataagctaatccaacaaactataagctag 4060374  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 28235374 - 28235307
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| ||||||| | || ||||| || ||||| |||||||| |||||||||||||||||| ||||    
T  28235374 cttgttaccaaacacgtcacgttttcatccaacgagcttataagctaatccaacaaactataagctag 28235307  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 31031904 - 31031971
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| |||||||   || ||||| | |||||| |||||||||||||||||||| |||||||||||    
T  31031904 cttgttaccaaacacgccacgttttcatttaacgagcttataagttaatccaacaagctataaactag 31031971  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 42997603 - 42997540
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaa 199  Q
    ||||||| ||||||||| || ||||| || ||||| |||||||| || ||||||||||||||||    
T  42997603 cttgttaccaaacacatcacgttttcatccaacgagcttataagctagtccaacaaactataaa 42997540  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 981426 - 981364
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataa 198  Q
    ||||||||||||||||| || ||||| |  ||| | |||||||| ||||||||||||||||||    
T  981426 cttgttatcaaacacatcacgttttcattcaactagcttataagctaatccaacaaactataa 981364  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 6243935 - 6243889
Alignment:
Q  157 ttttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||| |||||||| |||||||| ||||||||||| |||||||||||    
T  6243935 ttttcatctaacgagcttataagctaatccaacaagctataaactag 6243889  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 42265284 - 42265350
Alignment:
Q  137 ttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    |||||| ||||||| | || ||||| |||||||| |||||||| ||||||||||| |||||| ||||    
T  42265284 ttgttaccaaacacgtcacgttttcatctaacgagcttataagctaatccaacaagctataagctag 42265350  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 44103752 - 44103692
Alignment:
Q  137 ttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactata 197  Q
    |||||||||||||||| |||||||| || ||  |  ||||||| |||||||||||||||||    
T  44103752 ttgttatcaaacacatcacattttcatccaattagtttataagctaatccaacaaactata 44103692  T

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Target: scaffold0060 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 57859 - 57926
Alignment:
Q  136 cttgttatcaaacacattacattttcttctaacgaacttataagttaatccaacaaactataaactag 203  Q
    ||||||| |||||||   |||||||| |||||||| |||||||| ||||||||||| |||||| ||||    
T  57859 cttgttaccaaacacgccacattttcgtctaacgagcttataagctaatccaacaagctataagctag 57926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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