View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20288_high_15 (Length: 249)
Name: NF20288_high_15
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20288_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 34805220 - 34804986
Alignment:
| Q |
1 |
ctcacaatcaacatagttgataggttccttgctgtcaaccttgtgtcaagaagggaacttcaattggttggaatcagtgccatgctgatggcatcaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34805220 |
ctcacaatcaacatagttgataggttccttgctgtcaaccttgtgtcaagaagggaacttcaattggttggaatcagtgccatgctgatggcatcaaagt |
34805121 |
T |
|
| Q |
101 |
atgaagagatctggccacctgaggtcaatgactttgtgtgcctctcagatagagcttacagtcatgaacagattctcatcatggagaaaaccatcctagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34805120 |
atgaagagatctggccacctgaggtcaatgactttgtgtgcctctcagatagagcttacagtcatgaacagattctcatcatggagaaaaccatcctagg |
34805021 |
T |
|
| Q |
201 |
gaagcttgaatggactttgaccgtgccgacacctt |
235 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |
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| T |
34805020 |
aaagcttgaatggactttgaccgtgccaacacctt |
34804986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 19364466 - 19364700
Alignment:
| Q |
1 |
ctcacaatcaacatagttgataggttccttgctgtcaaccttgtgtcaagaagggaacttcaattggttggaatcagtgccatgctgatggcatcaaagt |
100 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
19364466 |
ctcacaatcaacatagttgataggttcctagctatcaaccttgtatcaagaagggaacttcaattggttggaatcagtgccatgctgatgacatcgaagt |
19364565 |
T |
|
| Q |
101 |
atgaagagatctggccacctgaggtcaatgactttgtgtgcctctcagatagagcttacagtcatgaacagattctcatcatggagaaaaccatcctagg |
200 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| | || |
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| T |
19364566 |
atgaagaaatctggccacctgaggtcaatgattttgtgtgcctctcagatagagcttacagtcatgagcagatactcatcatggagaaaactatcatggg |
19364665 |
T |
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| Q |
201 |
gaagcttgaatggactttgaccgtgccgacacctt |
235 |
Q |
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|| |||||||||||||||||||||||||||||||| |
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| T |
19364666 |
gatgcttgaatggactttgaccgtgccgacacctt |
19364700 |
T |
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