View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20288_low_1 (Length: 956)
Name: NF20288_low_1
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20288_low_1 |
 | |
|
| [»] scaffold1437 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 797; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 797; E-Value: 0
Query Start/End: Original strand, 8 - 938
Target Start/End: Complemental strand, 33139483 - 33138568
Alignment:
| Q |
8 |
agagaagaagaacaataaaaagaaatatagcagctttatatgcctcaaagtggtttaattgttcaaacttgagagtgttctatgaacttcattcaaaaag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33139483 |
agagaagaagaacaataaaaagaaatatagcagctttatatgcctcaaagtggttcaattgttcaaacttgagagtgttctatgaacttcattcaaaaag |
33139384 |
T |
|
| Q |
108 |
tacctagtattaactcttgcattggtagaagaggcacatgctgaagatgaagctgaaattacagatgaacttttaggtagtgagattagactatcatgtg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
33139383 |
tacctagtattaactcttgcattggtagaagaggcacatgctgaagatgaagctgaaattacagatgaacttttaggtagtgaaattagattatcatgtg |
33139284 |
T |
|
| Q |
208 |
agctaatttccctatcctcttcggtaattgtttccatcatatttgatgctctatgcctcataacagaaacatattgtggtggtgccacctccatgaaaaa |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33139283 |
agctaatttctctatcctcttcggtaattgtttccatcatatttgatgctctttgcctcataacagaaacatattgtggtggtgccacctccataaaaaa |
33139184 |
T |
|
| Q |
308 |
ccttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttgaattggacaaaaggtgtaattgctaagagatagataggaatgaaaatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33139183 |
tcttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattggacaaaaggtgtaattgctaagagatagataggaatgaaaatg |
33139084 |
T |
|
| Q |
408 |
ttttgtattgaggatgtgtttgaagcataagaacatggttctatttataaagggtggctagaagtaattaactaggcttaaattgagtcaagggtcttaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33139083 |
ttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggtggctagaagtaattaactaggcttaaattgagtcaagggtcttaa |
33138984 |
T |
|
| Q |
508 |
tctttgaggattaaatcaannnnnnnnnnnnagtgccgcctccagcttttgctattaaatgggatgacatactaacttacaagactttgtttctaatgtg |
607 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33138983 |
tctttgaggattaaatcaatttttattttttagtgccgcctccagcttttgctattaaatgggatgacatactaacttacaagactttgtttctaat--- |
33138887 |
T |
|
| Q |
608 |
ggacagtgtttggtatgtgtcaaaacctggatggaaattataatatccttttggatatggtttttgtttggtacgttgagttccaaatttatacttttca |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33138886 |
------------taatgtgtcaaaacctggatggaaattataatatccttttggatatggtttttgtttggtacgttgagttccaaatttatacttttca |
33138799 |
T |
|
| Q |
708 |
ttgataaattttagtgtagtagccatttaatactcttccacttgtgtttatttcatcctcacaatgcatgaaatctctcctcatttcaaacatgatgaga |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33138798 |
ttgataaattttagtgtagtagccatttaatactcttccacttgtgtttatttcatcctcacaatgcatgaaatctctcctcatttcaaacatgatgaga |
33138699 |
T |
|
| Q |
808 |
ttatatcttggggatgacataaagcaaaacaacaatatagtgactttttattaaatgtttatgtaaaactgttcaatttatcttgttagtgtcggtagaa |
907 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33138698 |
ttatatcttggggatgacataaagcaaatcaacaatatagtgactttttattaaatgtttatgtaaaactgttcaatttatcttgttagtgtcggtagaa |
33138599 |
T |
|
| Q |
908 |
gtgacaaaaaccattgaaaagaaaatgctat |
938 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33138598 |
gtgacaaaaaccattgaaaagaaaatgctat |
33138568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 178 - 525
Target Start/End: Complemental strand, 33149323 - 33148966
Alignment:
| Q |
178 |
ttttaggtagtgagattagactatcatgtgagctaatttccctatcctcttcggtaattgtttccatcatatttgatgctctatgcctcataacagaaac |
277 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
33149323 |
ttttaggtagtgaaattacactatcatgtgagttaatttccctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaac |
33149224 |
T |
|
| Q |
278 |
atattgtggtggtgccacctccatgaaaaaccttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttgaattg-gacaaaaggtgt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||| || |||| |||| |
|
|
| T |
33149223 |
atattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgccattcttaatgtgaactagtttcaagtgttcaattgcgaaaaaatgtgt |
33149124 |
T |
|
| Q |
377 |
aattgctaagagatagataggaatgaaaat------------gttttgtattgaggatgtgtttgaagcataagaacatggttctatttataaagggtgg |
464 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
33149123 |
aatcactaagagatagattggaatgaaaattgagctgaaaacgttttgtatt-ttgatgtgtttgaagcataaga--atagttcaatttataaagggtgg |
33149027 |
T |
|
| Q |
465 |
ctagaagtaattaactaggcttaaattgagtcaagggtcttaatctttgaggattaaatca |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
33149026 |
ctagaagtaattaactaggcttaaattgagtcaagggtcttaatctttgagggtcaaatca |
33148966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 70 - 200
Target Start/End: Complemental strand, 33143104 - 33142971
Alignment:
| Q |
70 |
tcaaacttgagagtgttctatgaacttcattcaaaaagtacctagtattaactcttgcattggtag---aagaggcacatgctgaagatgaagctgaaat |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||||||| |||| |||||||| |||||| |||||||||| |
|
|
| T |
33143104 |
tcaaacttgagagtgttctatgaacttcattcagaaagtacctagtgttaattgttgcattggtagaagaagatgcacatgcagaagataaagctgaaat |
33143005 |
T |
|
| Q |
167 |
tacagatgaacttttaggtagtgagattagacta |
200 |
Q |
| |
|
| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
33143004 |
tgcagatgaacttttaggttttgaaattagacta |
33142971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 235 - 392
Target Start/End: Complemental strand, 33142969 - 33142808
Alignment:
| Q |
235 |
ttgtttccatcatatttgatgctctatgcctcataacagaaacatattgtggtggtgccacctccatgaaaaaccttgcaatgcgagaacttgcc---at |
331 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||| ||| |||||| ||| | | |
|
|
| T |
33142969 |
ttgtttcaatcatatttgatgttctatgcctcatcacagaaacatattgtggtggtgccactttcatgaaaaaccttataatccgagaatttgtcttttt |
33142870 |
T |
|
| Q |
332 |
tcttaatgtgaattaacttcaagtgttgaattg-gacaaaaggtgtaattgctaagagatag |
392 |
Q |
| |
|
||| |||||||||||| |||||||||| ||||| | |||| |||||||||| ||| ||||| |
|
|
| T |
33142869 |
tctaaatgtgaattaatttcaagtgtttaattgtggaaaaatgtgtaattgccaagtgatag |
33142808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 616 - 729
Target Start/End: Complemental strand, 33148888 - 33148776
Alignment:
| Q |
616 |
tttggtatgtgtcaaaacctggatggaaattataatatccttttggatatggtttttgtttggtacgttgagttccaaatttatacttttcattgataaa |
715 |
Q |
| |
|
||||||| ||||||| | ||||||||||||| ||||||||| | ||||| ||||||||||||||| || |||||| | |||| |||||||||| | | |
|
|
| T |
33148888 |
tttggtacgtgtcaacatctggatggaaattctaatatcctctaagatatagtttttgtttggtacattaagttcc-attttacacttttcatttggaca |
33148790 |
T |
|
| Q |
716 |
ttttagtgtagtag |
729 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33148789 |
ttttagtgtagtag |
33148776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 428 - 491
Target Start/End: Complemental strand, 33142790 - 33142727
Alignment:
| Q |
428 |
tgaagcataagaacatggttctatttataaagggtggctagaagtaattaactaggcttaaatt |
491 |
Q |
| |
|
||||||| || |||||||||| |||||||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
33142790 |
tgaagcacaaaaacatggttcaatttataaggggtggccagaaataattaactaggcttaaatt |
33142727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 178 - 748
Target Start/End: Original strand, 3215308 - 3215874
Alignment:
| Q |
178 |
ttttaggtagtgagattagactatcatgtgagctaatttccctatcctcttcggtaattgtttccatcatatttgatgctctatgcctcataacagaaac |
277 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||| |||||| |||||||||||| | ||||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
3215308 |
ttttaggtagtgaaattacactgtcatgtgagttaattttcctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaac |
3215407 |
T |
|
| Q |
278 |
atattgtggtggtgccacctccatgaaaaaccttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttgaattg-gacaaaaggtgt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| ||||| | |||| |||| |
|
|
| T |
3215408 |
atattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgccattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgtgt |
3215507 |
T |
|
| Q |
377 |
aattgctaagagatagataggaatgaaaat------------gttttgtattgaggatgtgtttgaagcataagaacatggttctatttataaagggtgg |
464 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
3215508 |
aatcactaagagatagattggaatgaaaattgagctgaaatcgttttgtatt-ttgatgtgtttgaagcataaga--atagttcaatttataaagggtgg |
3215604 |
T |
|
| Q |
465 |
ctagaagtaattaactaggcttaaattgagtcaagggtcttaatctttgaggattaaatcaannnnnnnnnnnnagtgccgcctccagcttttgctatta |
564 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
3215605 |
ctagaagtaattatctaggcttaaattgagtcaagggtcttaatctttgagggtcaaatcagtttttatttgatggtgccgcctccagcttttgctatta |
3215704 |
T |
|
| Q |
565 |
aatgggatgacatactaacttacaagactttgtttctaatgtgggac--agtgtttggtatgtgtcaaaacctggatggaaattataatatccttttgga |
662 |
Q |
| |
|
||| ||| ||| |||||| |||||| |||||||| | | ||||||| ||||||| ||||||||| ||||| ||||||||| | || |
|
|
| T |
3215705 |
aat---atg--ttacaaactta----------tttctattgtgggacaaactatttggtacgtgtcaacacctggatgaaaattctaatatcctctaaga |
3215789 |
T |
|
| Q |
663 |
tatggtttttgtttggtacgttgagttccaaatttatacttttcattgataaattttagtgtagtagccatttaatactcttccac |
748 |
Q |
| |
|
||| ||||||||||||||| || |||||| | |||| ||||||||||| | ||||||||||||||||| |||||||||||||||| |
|
|
| T |
3215790 |
tatagtttttgtttggtacattaagttcc-attttacacttttcattgggacattttagtgtagtagccgtttaatactcttccac |
3215874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 69 - 323
Target Start/End: Original strand, 32349906 - 32350160
Alignment:
| Q |
69 |
ttcaaacttgagagtgttctatgaacttcattcaaaaagtacctagtattaactcttgcattggtagaagaggcacatgctgaagatgaa---gctgaaa |
165 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||||| |||| | | | |||| |
|
|
| T |
32349906 |
ttcaaacttgagagtgttctatgaacttccttcaggaagtacctagaattaacaactgcattggtagaagaggcacatgcagaagcagcaagagatgaag |
32350005 |
T |
|
| Q |
166 |
ttacagatgaacttttaggtagtgagattagactatcatgtgagctaatttccctatcctcttcggtaattgtttccatcatatttgatgctctatgcct |
265 |
Q |
| |
|
|| |||||| |||||||| |||| |||| |||||||| |||||| |||||| |||||||||| ||||||||||||||||| |||||| |||| |||| |
|
|
| T |
32350006 |
tt---gatgaatttttaggtggtgaaattacactatcatttgagctcatttccatatcctcttcagtaattgtttccatcatcattgatgttctacgcct |
32350102 |
T |
|
| Q |
266 |
cataacagaaacatattgtggtggtgccacctccatgaaaaaccttgcaatgcgagaa |
323 |
Q |
| |
|
||| || |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32350103 |
catcacgctaacatactgtggtggtgccacctccatgaaaaaccttgcaatgcgagaa |
32350160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 69 - 338
Target Start/End: Original strand, 32342783 - 32343040
Alignment:
| Q |
69 |
ttcaaacttgagagtgttctatgaacttcattcaaaaagtacctagtattaactcttgcattggtagaagaggcacatgctgaagatgaagctgaaatta |
168 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| ||| || ||||| |||||||||||||||||||| || ||||||||| | |
|
|
| T |
32342783 |
ttcaaacttgagagtgttctatgaacttccttcaggaagtccctggtgttaacagttgcattggtagaagaggca---gcaagtgatgaagctaa----- |
32342874 |
T |
|
| Q |
169 |
cagatgaacttttaggtagtgagattagactatcatgtgagctaatttccctatcctcttcggtaattgtttccatcatatttgatgctctatgcctcat |
268 |
Q |
| |
|
||||||||| ||| |||| || | ||| |||| |||| | ||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
32342875 |
----tgaactttttggtggtgaaatcacactgtcatttgagttgatttccctatcatcttcggtgattgtttccatcatctttgatgttctatgcctcat |
32342970 |
T |
|
| Q |
269 |
aacagaaacatattgtggtggtgccacctccatgaaaaaccttgcaatgcgagaacttgccattcttaat |
338 |
Q |
| |
|
|| |||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
32342971 |
cacgctaacatactgtggtggtgctacctccatgaaaaaccttgcaatgcgagaatttgccattgttaat |
32343040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 539 - 748
Target Start/End: Original strand, 32350308 - 32350517
Alignment:
| Q |
539 |
agtgccgcctccagcttttgctattaaatgggatgacatactaacttacaagactttgtttctaatgtgggacagtgtttggtatgtgtcaaaacctgga |
638 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| ||||||||||||||||| || || ||| ||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
32350308 |
agtgccacctccagcttttgctattaaatgtgatgctatactaacttacaagacatt-ttcctattgtgggacagtgtttggtaagtgccaaaacttgga |
32350406 |
T |
|
| Q |
639 |
tggaaattat--aatatccttttggatatggtttttgtttggtacgttgagttccaaatttatacttttcattgataaattttagtgtagtagccattta |
736 |
Q |
| |
|
| |||||| | ||||||||| |||| | |||||||| | ||| ||||||||||| || ||||||| |||| | ||| ||||||||||| |||| |
|
|
| T |
32350407 |
ttgaaattcttatatatcctttaagatacgatttttgttggatacactgagttccaaa-ttgcacttttctttgagacctttcagtgtagtagcagttta |
32350505 |
T |
|
| Q |
737 |
atactcttccac |
748 |
Q |
| |
|
| |||||||||| |
|
|
| T |
32350506 |
acactcttccac |
32350517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 405 - 526
Target Start/End: Original strand, 32343110 - 32343230
Alignment:
| Q |
405 |
atgttttgtattgaggatgtgtttgaagcataagaacatggttctatttataaagggtggctagaagtaattaactaggcttaaattgagtcaagggtct |
504 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||| |||||||| |||||||| ||||||||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
32343110 |
atgttttgtattgaggatgtgtatcaagcacaagggcatggttcaatttataaggggtggctagagatga-taactaggcttaaattgagtcaagggtct |
32343208 |
T |
|
| Q |
505 |
taatctttgaggattaaatcaa |
526 |
Q |
| |
|
| ||||| ||| ||||||||| |
|
|
| T |
32343209 |
ttatcttaaaggtttaaatcaa |
32343230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 604 - 658
Target Start/End: Original strand, 32343324 - 32343377
Alignment:
| Q |
604 |
tgtgggacagtgtttggtatgtgtcaaaacctggatggaaattataatatccttt |
658 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
32343324 |
tgtgggacagtgtttggcatgtgtcaaaacctggattg-aattattatatccttt |
32343377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 804
Target Start/End: Original strand, 32343836 - 32343900
Alignment:
| Q |
742 |
cttccacttgtgtttatttc--atcctcacaatgcatgaaatctctcctcatttcaaacatgatg |
804 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| || ||||| | |||||||||||||||||| |
|
|
| T |
32343836 |
cttcgacttgtgtttatttctcatcctcacaatgaatacaatcttttctcatttcaaacatgatg |
32343900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 178 - 525
Target Start/End: Complemental strand, 34011981 - 34011624
Alignment:
| Q |
178 |
ttttaggtagtgagattagactatcatgtgagctaatttccctatcctcttcggtaattgtttccatcatatttgatgctctatgcctcataacagaaac |
277 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
34011981 |
ttttaggtagtgaaattacactatcatgtgagttaatttccctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaac |
34011882 |
T |
|
| Q |
278 |
atattgtggtggtgccacctccatgaaaaaccttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttgaattg-gacaaaaggtgt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||| || |||| |||| |
|
|
| T |
34011881 |
atattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgccattcttaatgtgaactagtttcaagtgttcaattgcgaaaaaatgtgt |
34011782 |
T |
|
| Q |
377 |
aattgctaagagatagataggaatgaaaat------------gttttgtattgaggatgtgtttgaagcataagaacatggttctatttataaagggtgg |
464 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
34011781 |
aatcactaagagatagattggaatgaaaattgagctgaaaacgttttgtatt-ttgatgtgtttgaagcataaga--atagttcaatttataaagggtgg |
34011685 |
T |
|
| Q |
465 |
ctagaagtaattaactaggcttaaattgagtcaagggtcttaatctttgaggattaaatca |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
34011684 |
ctagaagtaattaactaggcttaaattgagtcaagggtcttaatctttgagggtcaaatca |
34011624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 616 - 729
Target Start/End: Complemental strand, 34011546 - 34011434
Alignment:
| Q |
616 |
tttggtatgtgtcaaaacctggatggaaattataatatccttttggatatggtttttgtttggtacgttgagttccaaatttatacttttcattgataaa |
715 |
Q |
| |
|
||||||| ||||||| | ||||||||||||| ||||||||| | ||||| ||||||||||||||| || |||||| | |||| |||||||||| | | |
|
|
| T |
34011546 |
tttggtacgtgtcaacatctggatggaaattctaatatcctctaagatatagtttttgtttggtacattaagttcc-attttacacttttcatttggaca |
34011448 |
T |
|
| Q |
716 |
ttttagtgtagtag |
729 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34011447 |
ttttagtgtagtag |
34011434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 744 - 781
Target Start/End: Complemental strand, 34010979 - 34010942
Alignment:
| Q |
744 |
tccacttgtgtttatttcatcctcacaatgcatgaaat |
781 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
34010979 |
tccacttgtgttaatttcatcctcacaatggatgaaat |
34010942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1437 (Bit Score: 138; Significance: 1e-71; HSPs: 1)
Name: scaffold1437
Description:
Target: scaffold1437; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 178 - 406
Target Start/End: Complemental strand, 761 - 532
Alignment:
| Q |
178 |
ttttaggtagtgagattagactatcatgtgagctaatttccctatcctcttcggtaattgtttccatcatatttgatgctctatgcctcataacagaaac |
277 |
Q |
| |
|
||||||||||||| |||| | | ||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
761 |
ttttaggtagtgaaattacattgtcatgtgagttaatttccctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaac |
662 |
T |
|
| Q |
278 |
atattgtggtggtgccacctccatgaaaaaccttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttgaattg-gacaaaaggtgt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| |||||||||| ||||| | |||| |||| |
|
|
| T |
661 |
atattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgtcattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgtgt |
562 |
T |
|
| Q |
377 |
aattgctaagagatagataggaatgaaaat |
406 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |
|
|
| T |
561 |
aatcactaagagatagattggaatgaaaat |
532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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