View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20288_low_10 (Length: 366)
Name: NF20288_low_10
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20288_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 41 - 361
Target Start/End: Original strand, 31621060 - 31621383
Alignment:
| Q |
41 |
agttgtatcacaattatataacagatttacttgagaaaaaacaccactatcacgttgaaactgatcagcgctctcaaatgtgctgttattaggcttgtca |
140 |
Q |
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||||||||||||||| ||||||||||||| ||||||| |||||| || || | |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31621060 |
agttgtatcacaattgtataacagatttagttgagaagaaacactaccataaggttgaaactggtcagcgctctcaaatgtgctgttattaggcttgtca |
31621159 |
T |
|
| Q |
141 |
ctcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttga |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31621160 |
ctcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtatttga |
31621259 |
T |
|
| Q |
241 |
cgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---accacaactctcttctctgtttcctccccagaa |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
31621260 |
cgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactaccacaacgctcttctctgttatttccccagaa |
31621359 |
T |
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| Q |
338 |
tggatacttgatgtctgtgctgct |
361 |
Q |
| |
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||||||||||| || |||| |||| |
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| T |
31621360 |
tggatacttgaggtttgtgatgct |
31621383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 41 - 361
Target Start/End: Original strand, 31636055 - 31636378
Alignment:
| Q |
41 |
agttgtatcacaattatataacagatttacttgagaaaaaacaccactatcacgttgaaactgatcagcgctctcaaatgtgctgttattaggcttgtca |
140 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||| |||||| || || | |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31636055 |
agttgtatcacaattgtataacagatttagttgagaagaaacactaccataaggttgaaactggtcagcgctctcaaatgtgctgttattaggcttgtca |
31636154 |
T |
|
| Q |
141 |
ctcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttga |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31636155 |
ctcacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtatttga |
31636254 |
T |
|
| Q |
241 |
cgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---accacaactctcttctctgtttcctccccagaa |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
31636255 |
cgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactaccacaacgctcttctctgttatttccccagaa |
31636354 |
T |
|
| Q |
338 |
tggatacttgatgtctgtgctgct |
361 |
Q |
| |
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||||||||||| || |||| |||| |
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| T |
31636355 |
tggatacttgaggtttgtgatgct |
31636378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 43 - 302
Target Start/End: Original strand, 31616325 - 31616575
Alignment:
| Q |
43 |
ttgtatcacaattatataacagatttacttgagaaaaaacaccactatcacgttgaaactgatcagcgctctcaaatgtgctgttattaggcttgtcact |
142 |
Q |
| |
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||||||||||||| |||||||| |||||||||||| ||||| ||| ||||||||||||| || || ||| ||||| || ||||| || || || | |
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| T |
31616325 |
ttgtatcacaattgtataacaggtttacttgagaagaaacaacaccatcacgttgaaac--at-agtgctatcaaaagttctgttcttgggatt-----t |
31616416 |
T |
|
| Q |
143 |
cacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacg |
242 |
Q |
| |
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| |||||||| | |||| ||||||||||| ||||||||||||||| |||| |||||||||||| || ||| | ||| ||| |||||||||||||| || |
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| T |
31616417 |
c-cactcacattgacagcacaaataccactccagtaatcgtctctggcgatcgtgagtttctgtattatatcattccaatcatgaatacggtatttggcg |
31616515 |
T |
|
| Q |
243 |
tcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31616516 |
tcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa |
31616575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 146 - 351
Target Start/End: Original strand, 31606494 - 31606705
Alignment:
| Q |
146 |
actcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtca |
245 |
Q |
| |
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||||||| |||||| ||||||||||| |||| |||| ||||| |||||||||||||| ||| || ||| || ||| |||||||| |||||||||||||| |
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| T |
31606494 |
actcacattcacagcacaaataccactccagcaatcttctctggcgactgtgagtttttgtattgtatcgttccaatcaagaatgcggtatttgacgtcg |
31606593 |
T |
|
| Q |
246 |
ttgatggttatctttggaacactttcttcgcatgtaagctccatattaggatc---agaaacaccacaactctct---tctctgtttcctccccagaatg |
339 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || | | ||||| ||| |||||||||||| |
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| T |
31606594 |
ttgatatttatctttggaacactttcttcgcatgtaagatccatattaggatcggaagaaacaccaccacaatatttatctctattttctccccagaatg |
31606693 |
T |
|
| Q |
340 |
gatacttgatgt |
351 |
Q |
| |
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|||||||||||| |
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| T |
31606694 |
gatacttgatgt |
31606705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 156 - 348
Target Start/End: Original strand, 31610334 - 31610529
Alignment:
| Q |
156 |
acagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggtta |
255 |
Q |
| |
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|||| ||||||||||| ||||||||||||||| || ||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||| || |||| |
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| T |
31610334 |
acagcacaaataccactccagtaatcgtctctggcaactctgagtctctgtgttgtattgtcccattcaagaatacggtatttgaccaaattaattgtta |
31610433 |
T |
|
| Q |
256 |
tctttggaacactttcttcgcatgtaagctccatattaggat---cagaaacaccacaactctcttctctgtttcctccccagaatggatacttga |
348 |
Q |
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|||| || |||||| |||||||| |||||||| ||||||| |||||||||||||| || ||||||||||||||||||| | |||||||||| |
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| T |
31610434 |
tcttagggacacttccttcgcatacgagctccatcttaggatcaccagaaacaccacaatacttttctctgtttcctccccagtacggatacttga |
31610529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 343
Target Start/End: Original strand, 31597326 - 31597496
Alignment:
| Q |
173 |
ccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttct |
272 |
Q |
| |
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||||||||| ||||| || ||| | ||| || ||||| ||||| ||||||||||||||| ||||| ||| |||||| |||||||| || || || || |
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| T |
31597326 |
ccagtaatcatctcttgcaactctaagtctcagtgttgcattgttccattcaagaatacgatatttcacgaaattgatcgttatcttcgggacttttcct |
31597425 |
T |
|
| Q |
273 |
tcgcatgtaagctccatattaggatcagaaacaccacaactctcttctctgtttcctccccagaatggata |
343 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||| | | |||| ||| |||||||||||||||| |
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| T |
31597426 |
tcgcatgtaagcttcatattaggatcggaaacaccacaataatttcctctattttctccccagaatggata |
31597496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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