View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20288_low_16 (Length: 276)

Name: NF20288_low_16
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20288_low_16
NF20288_low_16
[»] chr4 (2 HSPs)
chr4 (1-80)||(37435080-37435159)
chr4 (134-268)||(37434936-37435080)


Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 37435159 - 37435080
Alignment:
Q  1 tgttaaacacattttgttccaacagggggcagctgtgcgaagctgctatttgagtgggcagcagtttgcttttctggttt 80  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||    
T  37435159 tgttaaacacattttgttccaacagggggcagctgtgcatagctgctatttgagtgggcagcggtttgcttttctggttt 37435080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 37435080 - 37434936
Alignment:
Q  134 tatgcaatgccgtttgtagttattttcttatgcaagtt---------tcttgcgacaactttgcctaataaatttgcagattnnnnnnnnnnnt-cactt 223  Q
    ||||||||| ||||||||||| ||||||||||||||||         |||||||||||||||||||||||||||||||||||             |||||    
T  37435080 tatgcaatgtcgtttgtagttcttttcttatgcaagttatgtcggcttcttgcgacaactttgcctaataaatttgcagattaaaaaaaaaaaaacactt 37434981  T
Q  224 tccacaattacatgaaaaataagtcaaatatcaatattctatttg 268  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  37434980 cccacaattacatgaaaaataagtcaaatatcaatattctatttg 37434936  T

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