View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20288_low_2 (Length: 503)
Name: NF20288_low_2
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20288_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 197 - 490
Target Start/End: Complemental strand, 35972559 - 35972256
Alignment:
| Q |
197 |
gaagataggtggtttaaatagcatgcttcgagaatgaaacaatgatcctcaatgtcaatgttagcaatttgggtaacccaaaatcacgattagtgtagct |
296 |
Q |
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| T |
35972559 |
gaagataggtggtttaaatagcatgcttcgataatgaaacaatgatcctcgatgtcaatgttagcaatttgggtaacccaaaatcacgattagtgtagct |
35972460 |
T |
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| Q |
297 |
tttacaaaatcagggtcattaaccatattttgcaaacatt---------tttccatttcttacatcaatcaggtttattacagaacagtttttaagaaga |
387 |
Q |
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| T |
35972459 |
tttacaaaatcagggtcattgaccatattttgcaaacatgcattgtgaatttccatttcttacatcaatcaggtttattacagaacagtttttaagaaga |
35972360 |
T |
|
| Q |
388 |
gaggagaa-agtagctcactttgaagggccaaagagaacaataatagccaatataatcacatgtagagcacgaatgaaacaccaacatcatttagattgt |
486 |
Q |
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| T |
35972359 |
gaggagaagagtagctcactttgaagggccaaagagaacaataatagccaatataatcacatgtagagcacgaatgaaacaccaacatcatttagattgt |
35972260 |
T |
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| Q |
487 |
tttt |
490 |
Q |
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|||| |
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| T |
35972259 |
tttt |
35972256 |
T |
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Back To:
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Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 48725664 - 48725743
Alignment:
| Q |
1 |
caacataattatgtcacaaatgaattt-gcgaaaaattgagtgacacgtccaaattcataaccaaaatattttagagcat |
79 |
Q |
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| T |
48725664 |
caacataattctgtcacaaatgaatttagcgaaaaattgagtgacacgtccaaattcataaccaaaatattttaaagcat |
48725743 |
T |
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