View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20288_low_3 (Length: 460)
Name: NF20288_low_3
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20288_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 200 - 444
Target Start/End: Complemental strand, 29017826 - 29017582
Alignment:
| Q |
200 |
taatgacctaaattgaatggagaagacttaccaaccccaaaaggaccaatcaggaaagacaatatcaagagcatcattttgtccacaataactaaaaata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29017826 |
taatgacctaaattgaatggagaagacttaccaaccccaaaaggaccaatcaggaaagacaatatcaagagcatcattttgtccacaataactaaaaata |
29017727 |
T |
|
| Q |
300 |
ggtggtagtgtcacagattgtgatccttgaaatcnnnnnnnatccaatacagttctatcaccggtctcaaacaatagctccaaatctggtactctcccag |
399 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29017726 |
ggtggtagtgtcacagattgtgatccttgaaatctttttttatccaatacagttctatcaccagtctcaaacaatagctccaaatctggtactctcccag |
29017627 |
T |
|
| Q |
400 |
ggtacaaccttaaaagttgtactattccccatacagtgaacaaat |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29017626 |
ggtacaaccttaaaagttgtactattccccatacagtgaacaaat |
29017582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 29018309 - 29018108
Alignment:
| Q |
1 |
gcttatacctttgtgaggacacatgtgtgtttcctttccaaaaagcatagggaatcctatccttccatgtgatcttcttgttgctttcttgtatatcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29018309 |
gcttatacctttgtgaggacacatgtgtgtttcctttccaaaaagcatagggaatcctatccttccatgtgatcttcttgttgctttcttgtatatcctt |
29018210 |
T |
|
| Q |
101 |
caacactttctcccatggttttattccagtctcagcccttcaaatttacgttgaaatatttcgaagtttagaatctgaataagatgcatgagaacctcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
29018209 |
caacactttctcccatggttttattccagtctcagcccttcaaatttacgttgaaatatttcaaagtttagaatctgaataagatgcatgagaatctcat |
29018110 |
T |
|
| Q |
201 |
aa |
202 |
Q |
| |
|
|| |
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|
| T |
29018109 |
aa |
29018108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 223 - 436
Target Start/End: Complemental strand, 29037667 - 29037454
Alignment:
| Q |
223 |
agacttaccaaccccaaaaggaccaatcaggaaagacaatatcaagagcatcattttgtccacaataactaaaaataggtggtagtgtcacagattgtga |
322 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||| ||||||||| || || |
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| T |
29037667 |
agacttaccaaccccaataggaccaatcaggaaagacaatgtcaagagcttcattctttccacaataactaaaaataggtggtggtgtcacagcttctgg |
29037568 |
T |
|
| Q |
323 |
tccttgaaatcnnnnnnnatccaatacagttctatcaccggtctcaaacaatagctccaaatctggtactctcccagggtacaaccttaaaagttgtact |
422 |
Q |
| |
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||||| ||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29037567 |
tccttcgtatctttttttatccaccacagctctatcaccagtctcaaacaatagctccaaatctggtactctcccagggtacaaccttaaaagttgtact |
29037468 |
T |
|
| Q |
423 |
attccccatacagt |
436 |
Q |
| |
|
|||||||||||||| |
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| T |
29037467 |
attccccatacagt |
29037454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 29039638 - 29039521
Alignment:
| Q |
29 |
gtttcctttccaaaaagcatagggaatcctatccttccatgtgatcttcttgttgctttcttgtatatccttcaacactttctcccatggttttattcca |
128 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29039638 |
gtttcctttccaaaaagcatagggtatcctatccttccatttgatcttcttgttgctttcttgtatatccttcaacactttctcccatggttttattcta |
29039539 |
T |
|
| Q |
129 |
gtctcagcccttcaaatt |
146 |
Q |
| |
|
|||||||||||||||||| |
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| T |
29039538 |
gtctcagcccttcaaatt |
29039521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 11716144 - 11716217
Alignment:
| Q |
368 |
aaacaatagctccaaatctggtactctcccagggtacaaccttaaaagttgtactattccccatacagtgaaca |
441 |
Q |
| |
|
||||| |||||||||||| |||| | | |||||||| |||||||||||||||| |||||||||| ||||||| |
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| T |
11716144 |
aaacattagctccaaatcaggtatttttccagggtataaccttaaaagttgtaaaattccccatattgtgaaca |
11716217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 11716003 - 11716080
Alignment:
| Q |
227 |
ttaccaaccccaaaaggaccaatcaggaaagacaatatcaagagcatcattttgtccacaataactaaaaataggtgg |
304 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||||| ||||| | ||| | | |||||||||| |||||||||||| |
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| T |
11716003 |
ttaccaaccccagaaggtccaatcaggaaaaacaatgtcaagtgtatcttcatctccacaataatgaaaaataggtgg |
11716080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 7632731 - 7632667
Alignment:
| Q |
137 |
ccttcaaatttacgttgaaatatttcgaagtttagaatctgaataagatgcatgagaacctcata |
201 |
Q |
| |
|
|||||||| |||||||||||||||| || |||| ||| |||||||| |||||| ||| |||||| |
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| T |
7632731 |
ccttcaaaaatacgttgaaatatttcaaattttaaaatttgaataaggtgcatgtgaaactcata |
7632667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 35323680 - 35323615
Alignment:
| Q |
137 |
ccttcaaatttacgttgaaatatttcgaagtttagaatctgaataagatgcatgagaacctcataa |
202 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||||||||| || ||| ||||| ||||||| |
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| T |
35323680 |
ccttcaaaaatacgttgaaatatttcggattttagaatctgaataggacgcacgagaatctcataa |
35323615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 48390641 - 48390601
Alignment:
| Q |
154 |
aaatatttcgaagtttagaatctgaataagatgcatgagaa |
194 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||| |
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| T |
48390641 |
aaatatttcgaattttagaatctgaatgggatgcatgagaa |
48390601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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